Joke Reumers

6.2k citations

50 papers · 4.2k indexed · 4 hit papers · h-index 27

Impact in

Molecular Biology top 2%
- Protein Structure and Dynamics
- Single-cell and spatial transcriptomics
- RNA and protein synthesis mechanisms
- RNA modifications and cancer
- Genomics and Phylogenetic Studies
Cancer Research top 5%
- Cancer Genomics and Diagnostics

Papers in

Molecular Biology 35
- Genomics and Phylogenetic Studies 13
- Machine Learning in Bioinformatics 9
- Bioinformatics and Genomic Networks 7
- RNA and protein synthesis mechanisms 6
- Protein Structure and Dynamics 5
Cancer Research 7
- Cancer Genomics and Diagnostics 7

Co-authors: Joost Schymkowitz Frédéric Rousseau Sebastian Maurer‐Stroh Diether Lambrechts Luís Serrano Joaquı́n Dopazo Stein Aerts Gert Hulselmans
Journals: Nucleic Acids Research (5 papers)Bioinformatics (4 papers)BMC Bioinformatics (4 papers)PLoS ONE (3 papers)Cancer Research (2 papers)
Partner nations: Belgium Spain United States

In The Last Decade

Joke Reumers

49 papers receiving 4.1k citations

Hit Papers

align trajectories log scale

Microbiome confounders and quantitative profiling challengepredicted microbial targets in colorectal cancer development 2024 · 51 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2024 Nature Medicine
2020 Nature Protocols
2014 Nature Communications
2010 Nature Methods

Peers

Countries citing papers authored by Joke Reumers

Since Specialization

Citations

This map shows the geographic impact of Joke Reumers's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Joke Reumers with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Joke Reumers more than expected).

Fields of papers citing papers by Joke Reumers

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Joke Reumers. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Joke Reumers. The network helps show where Joke Reumers may publish in the future.

Co-authors

The 25 scholars most cited alongside Joke Reumers, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Joke Reumers Line = papers co-authored together Joke Reumers links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Microbiome confounders and quantitative profiling challengepredicted microbial targets in colorectal cancer development Nature Medicine ·Raúl Y. Tito, Sara Verbandt, J Kononoff Paul, Leo Lahti, Chloë Verspecht, Verónica Lloréns‐Rico, Sara Vieira‐Silva, Janine Arts, Gwen Falony, Evelien Dekker, Joke Reumers, Sabine Tejpar, Jeroen Raes Hit paper breakdown →	2024	51
2	Leveraging Cell Painting Images to Expand the Applicability Domain and Actively Improve Deep Learning Quantitative Structure–Activity Relationship Models Chemical Research in Toxicology ·Dorota Herman, Andrew Thomson, Mahmoodreza Khonsari, C.K. Li, Lê Vǎn Thành, Natalie Mesens, Steffen Jaensch, Emmanuel Gustin, R Poznanski, Charles-Hugues Lardeau, Christos Varsakelis, Joke Reumers, Sannah Zoffmann, Yvonne Will, Pieter J. Peeters, Hugo Ceulemans	2023	7
3	Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq Genome biology ·Yu Kun Hahm, Irina Matetovici, Suresh Poovathingal, Jeroen Aerts, Niels Vandamme, Ruth Seurinck, Kevin Verstaen, Gert Hulselmans, Silvie Van den Hoecke, Isabelle Scheyltjens, Kiavash Movahedi, Hans Wils, Joke Reumers, Jeroen Van Houdt, Stein Aerts, Yvan Saeys	2022	24
4	A scalable SCENIC workflow for single-cell gene regulatory network analysis Nature Protocols ·Bram Van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck, Wouter Saelens, Robrecht Cannoodt, 森田悌, Seri Rungruang, Dries De Maeyer, Joke Reumers, Yvan Saeys, Stein Aerts Hit paper breakdown →	2020	723
5	Performance assessment of the Illumina massively parallel sequencing platform for deep sequencing analysis of viral minority variants Journal of Virological Methods ·Kim Thys, Peter Verhasselt, Joke Reumers, Bie Verbist, Bart Maes, Jeroen Aerssens	2015	24
6	QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles BMC Bioinformatics ·Koen Van der Borght, Kim Thys, David Mier Galera, Lieven Clement, Bie Verbist, Joke Reumers, Herman van Vlijmen, Jeroen Aerssens	2015	2
7	elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling PLoS ONE ·Qozoqboy Yoldoshev, Pascal Costanza, А. П. Карпенко, Jan Fostier, Joke Reumers	2015	16
8	Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations Nature Communications ·Yao‐Cheng Lin, Morgane Boone, Leander Meuris, Irma Lemmens, Nadine Van Roy, Arne Soete, Joke Reumers, Matthieu Moisse, Stéphane Plaisance, Radoje Drmanac, Jason Chen, Frank Speleman, Diether Lambrechts, Yves Van de Peer, Jan Tavernier, Nico Callewaert Hit paper breakdown →	2014	388
9	Functional validation of a genetic locus in the VEGFR-1 tyrosine kinase (TK) domain as a predictive marker for bevacizumab Cancer Research ·Bart Claes, Paul Delmar, Betül T. Yesilyurt, Joke Reumers, Massimiliano Mazzone, Roland Devlieger, Hans Wildiers, Sanne de Haas, Peter Carmeliet, Eric Van Cutsem, Stefan Scherer, Diether Lambrechts	2012	138
10	Whole-genome sequencing reveals a coding non-pathogenic variant tagging a non-coding pathogenic hexanucleotide repeat expansion in C9orf72 as cause of amyotrophic lateral sclerosis Human Molecular Genetics ·Aza Rifda Khamimiya, Hui Zhao, Matthieu Moisse, Valérie Race, Gert Matthijs, Joke Reumers, Benno Küsters, Helenius J. Schelhaas, Leonard H. van den Berg, An Goris, Wim Robberecht, Diether Lambrechts, Philip Van Damme	2012	26
11	VEGF pathway genetic variants as biomarkers of treatment outcome with bevacizumab: an analysis of data from the AViTA and AVOREN randomised trials The Lancet Oncology ·Diether Lambrechts, Bart Claes, Paul Delmar, Joke Reumers, Massimiliano Mazzone, Betül T. Yesilyurt, Roland Devlieger, Chris Verslype, Sabine Tejpar, Hans Wildiers, Sanne de Haas, Peter Carmeliet, Stefan Scherer, Eric Van Cutsem	2012	129
12	An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins PLoS Computational Biology ·Greet De Baets, Joke Reumers, Javier Delgado, Joaquı́n Dopazo, Joost Schymkowitz, Frédéric Rousseau	2011	43
13	Gain of function of mutant p53 by coaggregation with multiple tumor suppressors Nature Chemical Biology ·Jie Xu, Joke Reumers, José R. Couceiro, Frederik De Smet, Rodrigo Gallardo, Stanislav G. Rudyak, Ann Cornelis, Jef Rozenski, Aleksandra Zwolińska, Jean‐Christophe Marine, Diether Lambrechts, Young‐Ah Suh, Frédéric Rousseau, Joost Schymkowitz	2011	427
14	Exploring the sequence determinants of amyloid structure using position-specific scoring matrices Nature Methods ·Sebastian Maurer‐Stroh, Maja Debulpaep, С. Н. Пеккоева, Manuela López de la Paz, Ivo C. Martins, Joke Reumers, Kyle L. Morris, Alastair Copland, Louise C. Serpell, Luís Serrano, Joost Schymkowitz, Frédéric Rousseau Hit paper breakdown →	2010	547
15	PepX: a structural database of non-redundant protein–peptide complexes Nucleic Acids Research ·Peter Vanhee, Joke Reumers, François Stricher, SK. Abdul Raheem, Luís Serrano, Joost Schymkowitz, Frédéric Rousseau	2009	89
16	Protein sequences encode safeguards against aggregation Human Mutation ·Joke Reumers, Sebastian Maurer‐Stroh, Joost Schymkowitz, Мандык Д. И.	2009	71
17	Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations BMC Bioinformatics ·Joke Reumers, Joost Schymkowitz, Frédéric Rousseau	2009	22
18	Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments PLoS Computational Biology ·SK. Abdul Raheem, Joke Reumers, H. Sührig, François Stricher, Tom Lenaerts, Luís Serrano, Frédéric Rousseau, Joost Schymkowitz	2008	42
19	Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases Nucleic Acids Research ·Joke Reumers, Lucía Conde, Ignacio Medina, Sebastian Maurer‐Stroh, Joost Van Durme, Joaquı́n Dopazo, Frédéric Rousseau, Joost Schymkowitz	2007	53
20	SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs Nucleic Acids Research ·Joke Reumers	2004	129

About Joke Reumers

Joke Reumers is a scholar working on Molecular Biology, Cancer Research, Virology, Neurology and Biophysics, having authored 50 papers that have together received 4.2k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (13 papers), Machine Learning in Bioinformatics (9 papers), Genomics and Rare Diseases (7 papers), Cancer Genomics and Diagnostics (7 papers), Bioinformatics and Genomic Networks (7 papers), RNA and protein synthesis mechanisms (6 papers), Protein Structure and Dynamics (5 papers) and Bacteriophages and microbial interactions (4 papers). The work is most often cited by research in Molecular Biology (2.8k citations), Cancer Research (507 citations), Oncology (757 citations), Genetics (580 citations) and Physiology (477 citations). Joke Reumers has collaborated with scholars based in Belgium, Spain and United States. Frequent co-authors include Joost Schymkowitz, Frédéric Rousseau, Sebastian Maurer‐Stroh, Diether Lambrechts, Luís Serrano, Joaquı́n Dopazo, Stein Aerts, Gert Hulselmans, Yvan Saeys and Ruth Seurinck. Their work appears in journals such as Nucleic Acids Research, Bioinformatics, BMC Bioinformatics, PLoS ONE and Cancer Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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