John Huddleston

39.3k total citations · 4 hit papers
40 papers, 7.8k citations indexed

About

John Huddleston is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, John Huddleston has authored 40 papers receiving a total of 7.8k indexed citations (citations by other indexed papers that have themselves been cited), including 26 papers in Molecular Biology, 17 papers in Genetics and 15 papers in Plant Science. Recurrent topics in John Huddleston's work include Genomics and Phylogenetic Studies (16 papers), Chromosomal and Genetic Variations (14 papers) and Influenza Virus Research Studies (11 papers). John Huddleston is often cited by papers focused on Genomics and Phylogenetic Studies (16 papers), Chromosomal and Genetic Variations (14 papers) and Influenza Virus Research Studies (11 papers). John Huddleston collaborates with scholars based in United States, Italy and Switzerland. John Huddleston's co-authors include Evan E. Eichler, Jonas Korlach, Stephen W. Turner, Chen-Shan Chin, James Drake, Alicia Clum, Cheryl Heiner, Patrick Marks, Alex Copeland and David H. Alexander and has published in prestigious journals such as Nature, Science and Proceedings of the National Academy of Sciences.

In The Last Decade

John Huddleston

38 papers receiving 7.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

2013 3.1k citations Chen-Shan Chin, David H. Alexander et al. Nature Methods profile →
Nextstrain: real-time tracking of pathogen evolution

2018 1.7k citations James Hadfield, Colin Megill et al. Bioinformatics profile →
Complete Mapping of Mutations to the SARS-CoV-2 Spike Receptor-Binding Domain that Escape Antibody Recognition

2020 568 citations Andrea N. Loes, John Huddleston et al. Cell Host & Microbe profile →
Resolving the complexity of the human genome using single-molecule sequencing

2014 499 citations Mark Chaisson, John Huddleston et al. profile →

Peers

Countries citing papers authored by John Huddleston

Since Specialization

Citations

This map shows the geographic impact of John Huddleston's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John Huddleston with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John Huddleston more than expected).

Fields of papers citing papers by John Huddleston

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John Huddleston. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John Huddleston. The network helps show where John Huddleston may publish in the future.

Co-authorship network of co-authors of John Huddleston

This figure shows the co-authorship network connecting the top 25 collaborators of John Huddleston. A scholar is included among the top collaborators of John Huddleston based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with John Huddleston. John Huddleston is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Nomenclature for Tracking of Genetic Variation of Seasonal Influenza Viruses 2026 ·Influenza and Other Respiratory Viruses ·(unknown), John Huddleston, (unknown), (unknown), (unknown), Mónica Galiano, (unknown), (unknown), David M. Smith, (unknown), (unknown), (unknown), Seiichiro Fujisaki, (unknown), (unknown), (unknown), (unknown), Rebecca Kondor, (unknown), Clyde Dapat, (unknown), (unknown)	0
2	Near real-time data on the human neutralizing antibody landscape to influenza virus to inform vaccine-strain selection in September 2025 2025 ·Virus Evolution ·(unknown), John Huddleston, Andrea N. Loes, S. Richard Turner, Jover Lee, Ian Barr, Benjamin J. Cowling, Janet A. Englund, Alexander L. Greninger, Ruth Harvey, Hideki Hasegawa, Faith Ho, Kirsten Lacombe, Nancy Leung, Nicola S. Lewis, Heidi Peck, Shinji Watanabe, Derek J. Smith, Trevor Bedford, Jesse D. Bloom	1
3	Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2 2024 ·Virus Evolution ·(unknown), Allison Black, Trevor Bedford, John Huddleston	1
4	Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition 2023 ·SHILAP Revista de lepidopterología ·Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher, Trevor Bedford, John Huddleston	4
5	Rapid and parallel adaptive mutations in spike S1 drive clade success in SARS-CoV-2 2022 ·Cell Host & Microbe ·Kathryn E. Kistler, John Huddleston, Trevor Bedford	56
6	Limited Predictability of Amino Acid Substitutions in Seasonal Influenza Viruses 2021 ·Molecular Biology and Evolution ·Pierre Barrat-Charlaix, John Huddleston, Trevor Bedford, Richard A. Neher	19
7	Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens 2021 ·The Journal of Open Source Software ·John Huddleston, James Hadfield, Thomas R. Sibley, Jover Lee, Kairsten Fay, Misja Ilcisin, Elias Harkins, Trevor Bedford, Richard A. Neher, Emma B. Hodcroft	108
8	Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution 2020 ·eLife ·John Huddleston, John Barnes, Thomas Rowe, Xiyan Xu, Rebecca Kondor, David E. Wentworth, Lynne Whittaker, Burcu Ermetal, Rodney S. Daniels, John W. McCauley, Seiichiro Fujisaki, Kazuya Nakamura, Noriko Kishida, Shinji Watanabe, Hideki Hasegawa, Ian Barr, Kanta Subbarao, Pierre Barrat-Charlaix, Richard A. Neher, Trevor Bedford	40
9	Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017–2018 influenza season 2019 ·Virus Evolution ·Barney Potter, Rebecca Kondor, James Hadfield, John Huddleston, John Barnes, Thomas Rowe, Lizheng Guo, Xiyan Xu, Richard A. Neher, Trevor Bedford, David E. Wentworth	24
10	Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants 2018 ·Proceedings of the National Academy of Sciences ·Juhye Lee, John Huddleston, Michael B. Doud, Kathryn A. Hooper, Nicholas C. Wu, Trevor Bedford, Jesse D. Bloom	117
11	Nextstrain: real-time tracking of pathogen evolution breakdown → 2018 ·Bioinformatics ·James Hadfield, Colin Megill, Sidney M. Bell, John Huddleston, Barney Potter, Charlton Callender, (unknown), Trevor Bedford, Richard A. Neher	1714
12	Epigenetic origin of evolutionary novel centromeres 2017 ·Scientific Reports ·Doron Tolomeo, Oronzo Capozzi, Roscoe Stanyon, Nicoletta Archidiacono, Pietro D’Addabbo, Claudia Rita Catacchio, Stefania Purgato, Giovanni Perini, W. Schempp, John Huddleston, Maika Malig, Evan E. Eichler, Mariano Rocchi	29
13	Long-read sequence assembly of the gorilla genome 2016 ·Science ·David Gordon, John Huddleston, Mark Chaisson, C. Hill, Zev Kronenberg, Katherine M. Munson, Maika Malig, Archana N. Raja, Ian T. Fiddes, LaDeana Hillier, Christopher Dunn, Carl Baker, Joel Armstrong, Mark Diekhans, Benedict Paten, Jay Shendure, Richard K. Wilson, David Haussler, Chen-Shan Chin, Evan E. Eichler	218
14	Discovery and genotyping of structural variation from long-read haploid genome sequence data 2016 ·Genome Research ·John Huddleston, Mark Chaisson, Karyn Meltz Steinberg, Wes Warren, Kendra Hoekzema, David Gordon, Tina A. Graves-Lindsay, Katherine M. Munson, Zev Kronenberg, Laura Vives, Paul Peluso, Matthew Boitano, (unknown), Jonas Korlach, Richard K. Wilson, Evan E. Eichler	235
15	Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region 2016 ·Genome Research ·Kiana Mohajeri, Stuart Cantsilieris, John Huddleston, Bradley J. Nelson, Bradley P. Coe, Catarina D. Campbell, Carl Baker, Lana Harshman, Katherine M. Munson, Zev Kronenberg, Milinn Kremitzki, Archana N. Raja, Claudia Rita Catacchio, Tina Graves, Richard K. Wilson, Mario Ventura, Evan E. Eichler	20
16	Reconstructing complex regions of genomes using long-read sequencing technology 2014 ·Genome Research ·John Huddleston, Swati Ranade, Maika Malig, Francesca Antonacci, Mark Chaisson, Lawrence Hon, Peter H. Sudmant, Tina Graves, Can Alkan, Megan Y. Dennis, Richard K. Wilson, Stephen W. Turner, Jonas Korlach, Evan E. Eichler	179
17	Evolution and diversity of copy number variation in the great ape lineage 2013 ·Genome Research ·Peter H. Sudmant, John Huddleston, Claudia Rita Catacchio, Maika Malig, LaDeana W. Hillier, Carl Baker, Kiana Mohajeri, Ivanela Kondova, Ronald E. Bontrop, Stephan P. Persengiev, Francesca Antonacci, Mario Ventura, Javier Prado-Martinez, (unknown), Tomàs Marquès‐Bonet, Evan E. Eichler	106
18	Hominoid fission of chromosome 14/15 and the role of segmental duplications 2013 ·Genome Research ·Giuliana Giannuzzi, (unknown), John Huddleston, Francesca Antonacci, Maika Malig, Laura Vives, Evan E. Eichler, Mario Ventura	10
19	Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data breakdown → 2013 ·Nature Methods ·Chen-Shan Chin, David H. Alexander, Patrick Marks, Aaron A. Klammer, James Drake, Cheryl Heiner, Alicia Clum, Alex Copeland, John Huddleston, Evan E. Eichler, Stephen W. Turner, Jonas Korlach	3105
20	Complete Haplotype Sequence of the Human Immunoglobulin Heavy-Chain Variable, Diversity, and Joining Genes and Characterization of Allelic and Copy-Number Variation 2013 ·The American Journal of Human Genetics ·Corey T. Watson, Karyn Meltz Steinberg, John Huddleston, Robin M. Warren, Maika Malig, Jacqueline E. Schein, A. Jeremy Willsey, Jeffrey B. Joy, Jamie K. Scott, Tina Graves, Richard K. Wilson, Robert A. Holt, Evan E. Eichler, Felix Breden	154

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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