João Rodrigues

8.2k citations

42 papers · 4.8k indexed · 3 hit papers · h-index 24

Molecular Biology top 2%
- Protein Structure and Dynamics 22
- RNA and protein synthesis mechanisms 7
- Receptor Mechanisms and Signaling 4
- Genomics and Phylogenetic Studies 3
- vaccines and immunoinformatics approaches 3
Infectious Diseases top 2%
- SARS-CoV-2 and COVID-19 Research 4
Computational Theory and Mathematics top 1%
- Computational Drug Discovery Methods 9
Structural Biology top 5%
Immunology top 5%
Materials Chemistry
- Enzyme Structure and Function 12

Co-authors: Alexandre M. J. J. Bonvin Panagiotis L. Kastritis Adrien S. J. Melquiond Ezgi Karaca Mikaël Trellet Gydo C. P. van Zundert Marc van Dijk Sjoerd J. de Vries
Cited by: Molecular Biology Infectious Diseases Computational Theory and Mathematics
Partner nations: Netherlands United States Germany

In The Last Decade

João Rodrigues

42 papers receiving 4.7k citations

Hit Papers

align trajectories log scale

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

2024 The HADDOCK2.4 web server for integrative modeling of biomolecular complexes
2016 PRODIGY: a web server for predicting the binding affinity of protein–protein complexes
2015 The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

Peers

Countries citing papers authored by João Rodrigues

Since Specialization

Citations

This map shows the geographic impact of João Rodrigues's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by João Rodrigues with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites João Rodrigues more than expected).

Fields of papers citing papers by João Rodrigues

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by João Rodrigues. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by João Rodrigues. The network helps show where João Rodrigues may publish in the future.

Co-authorship network

The 25 scholars most cited alongside João Rodrigues, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with João Rodrigues Line = papers co-authored together João Rodrigues links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	The HADDOCK2.4 web server for integrative modeling of biomolecular complexesbreakdown → Rodrigo V. Honorato,Mikaël Trellet,Brian Jiménez‐García,Jörg Schaarschmidt,Marco Giulini,Victor Reys,Panagiotis I. Koukos,João Rodrigues,Ezgi Karaca,Gydo C. P. van Zundert,Jorge Roel‐Touris,Charlotte W. van Noort,Zuzana Jandová,Adrien S. J. Melquiond,Alexandre M. J. J. Bonvin	2024	142
2	An Electrostatically-steered Conformational Selection Mechanism Promotes SARS-CoV-2 Spike Protein Variation Marija Sorokina,Jaydeep Belapure,Christian Tüting,Reinhard Paschke,Ioannis Papasotiriou,João Rodrigues,Panagiotis L. Kastritis	2022	1
3	Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2 Ilya R. Fischhoff,Adrian A. Castellanos,João Rodrigues,Arvind Varsani,Barbara A. Han	2021	47
4	Bacterial flagellar motor PL-ring disassembly subcomplexes are widespread and ancient Mohammed Kaplan,Michael J. Sweredoski,João Rodrigues,Elitza I. Tocheva,Yi‐Wei Chang,Davi R. Ortega,Morgan Beeby,Grant J. Jensen	2020	21
5	PDB‐tools web: A user‐friendly interface for the manipulation of PDB files Brian Jiménez‐García,João M. C. Teixeira,Mikaël Trellet,João Rodrigues,Alexandre M. J. J. Bonvin	2020	18
6	Insights on cross-species transmission of SARS-CoV-2 from structural modeling João Rodrigues,Susana Barrera-Vilarmau,João M. C. Teixeira,Marija Sorokina,Elizabeth Seckel,Panagiotis L. Kastritis,Michael Levitt	2020	38
7	Structural models of human ACE2 variants with SARS-CoV-2 Spike protein for structure-based drug design Marija Sorokina,João M. C. Teixeira,Susana Barrera-Vilarmau,Reinhard Paschke,Ioannis Papasotiriou,João Rodrigues,Panagiotis L. Kastritis	2020	24
8	The solution structure of monomeric CCL5 in complex with a doubly sulfated N‐terminal segment of CCR5 Meital Abayev,João Rodrigues,Gautam Srivastava,Boris Arshava,Łukasz Jaremko,Mariusz Jaremko,Fred Naider,Michael Levitt,Jacob Anglister	2018	33
9	Augmenting Research, Education, and Outreach with Client-Side Web Programming Luciano A. Abriata,João Rodrigues,Marcel Salathé,Luc Patiny	2017	12
10	Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2 Zeynep Kurkcuoglu,Panagiotis I. Koukos,Nevia Citro,Mikaël Trellet,João Rodrigues,Irina S. Moreira,Jorge Roel‐Touris,Adrien S. J. Melquiond,Cunliang Geng,Jörg Schaarschmidt,Li C. Xue,Anna Vangone,Alexandre M. J. J. Bonvin	2017	100
11	Structural and Functional Analysis of a β2-Adrenergic Receptor Complex with GRK5 Konstantin E. Komolov,Yang Du,Nguyen Minh Duc,Robin M. Betz,João Rodrigues,Ryan D. Leib,Dhabaleswar Patra,Georgios Skiniotis,Christopher M. Adams,Ron O. Dror,Ka Young Chung,Brian K. Kobilka,Jeffrey Benovic	2017	126
12	M3: an integrative framework for structure determination of molecular machines Ezgi Karaca,João Rodrigues,Andrea Graziadei,Alexandre M. J. J. Bonvin,Teresa Carlomagno	2017	30
13	New Insight into the Catalytic Mechanism of Bacterial MraY from Enzyme Kinetics and Docking Studies Yao Liu,垚刘,João Rodrigues,Alexandre M. J. J. Bonvin,Esther A. Zaal,Celia R. Berkers,Michal Heger,Katarzyna Gawarecka,Ewa Świeżewska,Eefjan Breukink,Maarten R. Egmond	2016	16
14	PRODIGY: a web server for predicting the binding affinity of protein–protein complexesbreakdown → Li C. Xue,João Rodrigues,Panagiotis L. Kastritis,Alexandre M. J. J. Bonvin,Anna Vangone	2016	858
15	Template-based protein–protein docking exploiting pairwise interfacial residue restraints Li C. Xue,João Rodrigues,Drena Dobbs,Vasant Honavar,Alexandre M. J. J. Bonvin	2016	20
16	The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexesbreakdown → Gydo C. P. van Zundert,João Rodrigues,Mikaël Trellet,Carl Schmitz,Panagiotis L. Kastritis,Ezgi Karaca,Adrien S. J. Melquiond,Marc van Dijk,Sjoerd J. de Vries,Alexandre M. J. J. Bonvin	2015	1942
17	Proteins Feel More Than They See: Fine-Tuning of Binding Affinity by Properties of the Non-Interacting Surface Panagiotis L. Kastritis,João Rodrigues,Gert E. Folkers,Rolf Boelens,Alexandre M. J. J. Bonvin	2014	104
18	Integrative computational modeling of protein interactions João Rodrigues,Alexandre M. J. J. Bonvin	2014	81
19	KoBaMIN: a knowledge-based minimization web server for protein structure refinement João Rodrigues,Michael Levitt,Gaurav Chopra	2012	110
20	Clustering biomolecular complexes by residue contacts similarity João Rodrigues,Mikaël Trellet,Christophe Schmitz,Panagiotis L. Kastritis,Ezgi Karaca,Adrien S. J. Melquiond,Alexandre M. J. J. Bonvin	2012	100

About João Rodrigues

João Rodrigues is a scholar working on Computational Theory and Mathematics, Molecular Biology and Materials Chemistry, having authored 42 papers that have together received 4.8k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (22 papers), Enzyme Structure and Function (12 papers), Computational Drug Discovery Methods (9 papers), RNA and protein synthesis mechanisms (7 papers), SARS-CoV-2 and COVID-19 Research (4 papers), Receptor Mechanisms and Signaling (4 papers), Genomics and Phylogenetic Studies (3 papers) and vaccines and immunoinformatics approaches (3 papers). The work is most often cited by research in Molecular Biology (3.6k citations), Infectious Diseases (675 citations) and Computational Theory and Mathematics (567 citations). João Rodrigues has collaborated with scholars based in Netherlands, United States and Germany. Frequent co-authors include Alexandre M. J. J. Bonvin, Panagiotis L. Kastritis, Adrien S. J. Melquiond, Ezgi Karaca, Mikaël Trellet, Gydo C. P. van Zundert, Marc van Dijk, Sjoerd J. de Vries, Carl Schmitz and Li C. Xue.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact