Marc van Dijk

7.0k total citations · 2 hit papers
33 papers, 4.7k citations indexed

About

Marc van Dijk is a scholar working on Molecular Biology, Materials Chemistry and Computational Theory and Mathematics. According to data from OpenAlex, Marc van Dijk has authored 33 papers receiving a total of 4.7k indexed citations (citations by other indexed papers that have themselves been cited), including 22 papers in Molecular Biology, 8 papers in Materials Chemistry and 7 papers in Computational Theory and Mathematics. Recurrent topics in Marc van Dijk's work include Protein Structure and Dynamics (16 papers), Computational Drug Discovery Methods (7 papers) and Enzyme Structure and Function (6 papers). Marc van Dijk is often cited by papers focused on Protein Structure and Dynamics (16 papers), Computational Drug Discovery Methods (7 papers) and Enzyme Structure and Function (6 papers). Marc van Dijk collaborates with scholars based in Netherlands, United States and Germany. Marc van Dijk's co-authors include Alexandre M. J. J. Bonvin, Sjoerd J. de Vries, Panagiotis L. Kastritis, Ezgi Karaca, João Rodrigues, Adrien S. J. Melquiond, Mikaël Trellet, Gydo C. P. van Zundert, Carl Schmitz and Tsjerk A. Wassenaar and has published in prestigious journals such as Nucleic Acids Research, Journal of Molecular Biology and Cancer Research.

In The Last Decade

Marc van Dijk

31 papers receiving 4.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

2015 1.9k citations Gydo C. P. van Zundert, João Rodrigues et al. Journal of Molecular Biology profile →
The HADDOCK web server for data-driven biomolecular docking

2010 1.1k citations Sjoerd J. de Vries, Marc van Dijk et al. Nature Protocols profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Marc van Dijk Netherlands	18	3.5k	500	470	444	401	33	4.7k
François Stricher Spain	25	4.0k 1.2×	600 1.2×	328 0.7×	297 0.7×	746 1.9×	32	4.9k
Jim Warwicker United Kingdom	37	4.1k 1.2×	797 1.6×	340 0.7×	295 0.7×	297 0.7×	125	5.2k
Narayanaswamy Srinivasan India	38	3.7k 1.1×	942 1.9×	429 0.9×	328 0.7×	491 1.2×	232	5.1k
Enrico O. Purisima Canada	36	3.3k 1.0×	352 0.7×	317 0.7×	541 1.2×	225 0.6×	113	4.7k
Ting Ran China	19	4.1k 1.2×	706 1.4×	227 0.5×	653 1.5×	259 0.6×	60	5.7k
C. Geourjon France	28	3.7k 1.1×	469 0.9×	468 1.0×	233 0.5×	683 1.7×	48	5.6k
Fabian Glaser Israel	34	4.6k 1.3×	787 1.6×	334 0.7×	536 1.2×	707 1.8×	76	6.2k
Iddo Friedberg United States	25	5.7k 1.6×	416 0.8×	827 1.8×	349 0.8×	749 1.9×	59	7.2k
Kam Y. J. Zhang Japan	40	4.9k 1.4×	883 1.8×	758 1.6×	905 2.0×	273 0.7×	152	6.3k
Roberto Sánchez United States	32	5.6k 1.6×	1.0k 2.1×	353 0.8×	692 1.6×	695 1.7×	66	7.2k

Countries citing papers authored by Marc van Dijk

Since Specialization

Citations

This map shows the geographic impact of Marc van Dijk's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Marc van Dijk with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Marc van Dijk more than expected).

Fields of papers citing papers by Marc van Dijk

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Marc van Dijk. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Marc van Dijk. The network helps show where Marc van Dijk may publish in the future.

Co-authorship network of co-authors of Marc van Dijk

This figure shows the co-authorship network connecting the top 25 collaborators of Marc van Dijk. A scholar is included among the top collaborators of Marc van Dijk based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Marc van Dijk. Marc van Dijk is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Stroet, Martin, Bertrand Caron, Marc van Dijk, et al.. (2023). OFraMP: a fragment-based tool to facilitate the parametrization of large molecules. Journal of Computer-Aided Molecular Design. 37(8). 357–371. 11 indexed citations

Dijk, Marc van, et al.. (2020). Recent Developments in Linear Interaction Energy Based Binding Free Energy Calculations. Frontiers in Molecular Biosciences. 7. 114–114. 23 indexed citations

Dijk, Marc van, et al.. (2019). A Comparative Linear Interaction Energy and MM/PBSA Study on SIRT1–Ligand Binding Free Energy Calculation. Journal of Chemical Information and Modeling. 59(9). 4018–4033. 67 indexed citations

Capoferri, Luigi, et al.. (2017). eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulations. Journal of Cheminformatics. 9(1). 58–58. 7 indexed citations

Huseinovic, Angelina, Marc van Dijk, Nico Vermeulen, et al.. (2017). Drug toxicity profiling of a Saccharomyces cerevisiae deubiquitinase deletion panel shows that acetaminophen mimics tyrosine. Toxicology in Vitro. 47. 259–268. 4 indexed citations

Zundert, Gydo C. P. van, João Rodrigues, Mikaël Trellet, et al.. (2015). The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes. Journal of Molecular Biology. 428(4). 720–725. 1942 indexed citations breakdown →

Rey, Martial, Vladimir Sarpe, Kyle M. Burns, et al.. (2014). Mass Spec Studio for Integrative Structural Biology. Structure. 22(10). 1538–1548. 78 indexed citations

Dijk, Marc van, Koen M. Visscher, Panagiotis L. Kastritis, & Alexandre M. J. J. Bonvin. (2013). Solvated protein–DNA docking using HADDOCK. Journal of Biomolecular NMR. 56(1). 51–63. 17 indexed citations

Rodrigues, João, Adrien S. J. Melquiond, Ezgi Karaca, et al.. (2013). Defining the limits of homology modeling in information‐driven protein docking. Proteins Structure Function and Bioinformatics. 81(12). 2119–2128. 50 indexed citations

10.

Gradmann, Sabine, Christian Ader, Deepak Nand, et al.. (2012). Rapid prediction of multi-dimensional NMR data sets. Journal of Biomolecular NMR. 54(4). 377–387. 32 indexed citations

11.

Das, Devashish, Gert E. Folkers, Marc van Dijk, et al.. (2012). The Structure of the XPF-ssDNA Complex Underscores the Distinct Roles of the XPF and ERCC1 Helix- Hairpin-Helix Domains in ss/ds DNA Recognition. Structure. 20(4). 667–675. 23 indexed citations

12.

Price, David, et al.. (2012). Representing the spatial variability of rainfall for input to the G2G distributed flood forecasting model: operational experience from the Flood Forecasting Centre. NERC Open Research Archive (Natural Environment Research Council). 2 indexed citations

13.

Wassenaar, Tsjerk A., Marc van Dijk, Gijs van der Schot, et al.. (2011). WeNMR: structural biology on the grid. HAL (Le Centre pour la Communication Scientifique Directe). 819. 4 indexed citations

14.

Vries, Sjoerd J. de, Marc van Dijk, & Alexandre M. J. J. Bonvin. (2010). The HADDOCK web server for data-driven biomolecular docking. Nature Protocols. 5(5). 883–897. 1088 indexed citations breakdown →

15.

Dijk, Marc van, et al.. (2010). The Dutch translation of the revised Childhood Health Assessment Questionnaire: a preliminary study of score distribution.. PubMed. 28(2). 275–80. 6 indexed citations

16.

Dijk, Marc van & Alexandre M. J. J. Bonvin. (2009). 3D-DART: a DNA structure modelling server. Nucleic Acids Research. 37(Web Server). W235–W239. 263 indexed citations

17.

Vries, Sjoerd J. de, Aalt D. J. van Dijk, Mickaël Krzeminski, et al.. (2007). HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets. Proteins Structure Function and Bioinformatics. 69(4). 726–733. 490 indexed citations

18.

Dijk, Marc van. (2006). Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility. Nucleic Acids Research. 34(11). 3317–3325. 151 indexed citations

19.

Pratson, Lincoln F., J. B. Swenson, Albert J. Kettner, et al.. (2004). Modeling Continental Shelf Formation in the Adriatic Sea and Elsewhere. Oceanography. 17(4). 118–131. 11 indexed citations

20.

Weerts, Albrecht, Ferdinand Diermanse, Paolo Reggiani, et al.. (2003). Assessing and quantifying the combined effect of model parameter and boundary uncertainties in model based flood forecasting. EGS - AGU - EUG Joint Assembly. 14564. 1 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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