Jan Baumbach

22.6k citations

439 papers · 13.2k indexed · 3 hit papers · h-index 58

Impact in

Spectroscopy top 0.2%
- Mass Spectrometry Techniques and Applications
- Analytical Chemistry and Chromatography
Health Informatics top 0.5%

Papers in

Spectroscopy 81
- Analytical Chemistry and Chromatography 58
- Mass Spectrometry Techniques and Applications 49
Health Informatics 6

Co-authors: Markus List Wolfgang Vautz Bertram Bödeker Richard Röttger Anne-Christin Hauschild Josch K. Pauling Tobias Wittkop Stefanie Sielemann
Journals: Bioinformatics (20 papers)Journal of Breath Research (15 papers)Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics (13 papers)Nucleic Acids Research (13 papers)PLoS ONE (9 papers)
Partner nations: Germany Denmark United States

In The Last Decade

Jan Baumbach

420 papers receiving 13.0k citations

Hit Papers

align trajectories log scale

Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing 2021 · 270 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2021 mSphere
2021 Computational and Structural Biotechnology Journal
2019 Bioinformatics

Peers

Countries citing papers authored by Jan Baumbach

Since Specialization

Citations

This map shows the geographic impact of Jan Baumbach's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jan Baumbach with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jan Baumbach more than expected).

Fields of papers citing papers by Jan Baumbach

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jan Baumbach. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jan Baumbach. The network helps show where Jan Baumbach may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Jan Baumbach, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jan Baumbach Line = papers co-authored together Jan Baumbach links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Systematic evaluation of normalization approaches in tandem mass tag and label-free protein quantification data using PRONE Briefings in Bioinformatics ·Maria Carmela Filomena, V Popa, Andrew Elrod, Sujuan Diao, Olga Zolotareva, Olga Tsoy, Josch K. Pauling, Stefan Kalkhof, Jan Baumbach, Markus List, 津留美元川	2025	1
2	Transforming literature screening: The emerging role of large language models in systematic reviews Proceedings of the National Academy of Sciences ·Line Thoft Carlsen, Matthew J. Jennings, António Atalaia, Zhuang Shulian, Rita Horváth, Zeinab M. Mamdouh, Jan Baumbach, Edward A. Hagan	2025	14
3	Inflammatory injury induces pain sensitization that is expressed beyond the site of injury in male (and not in female) mice Behavioural Brain Research ·Jan Baumbach, Lochali Hema, Loren J. Martin	2024	3
4	Laminarin-triggered defence responses are geographically dependent in natural populations of Solanum chilense Journal of Experimental Botany ·健二日吉, 潮山崎, Maria d'Agostino, Mhaned Oubounyt, Michael Gigl, 卓也小角, Jan Baumbach, Ralph Hückelhoven, Corinna Dawid, Remco Stam	2023	10
5	New Enhancing MRI Lesions Associate with IL-17, Neutrophil Degranulation and Integrin Microparticles: Multi-Omics Combined with Frequent MRI in Multiple Sclerosis Biomedicines ·Zsolt Illés, Maléne Møller Jørgensen, Rikke Bæk, Ergun Tavlan, Jørgen T. Lauridsen, Ejan Rajbhandari, Elin Bryntesson, Jan Baumbach, Tim Kacprowski, François Cotton, Charles R.G. Guttmann, Allan Stensballe	2023	2
6	Machine learning–based integration of network features and chemical structure of compounds for SARS‐CoV‐2 drug effect analysis CPT Pharmacometrics & Systems Pharmacology ·相沢康子, Rui‐Sheng Wang, آمال جمعة عبد الفتاح محمد, Jan Baumbach, Joseph Loscalzo	2023	4
7	Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond Nature Communications ·Sepideh Sadegh, 佳代子岩谷, Elisa Anastasi, Kathleen Hobson, V Popa, Ray A. Frizzell, Nils M. Kriege, Jaanika Kronberg, Toomas Haller, Tim Kacprowski, Anil Wipat, Jan Baumbach, David B. Blumenthal	2023	8
8	Namco: a microbiome explorer Microbial Genomics ·Yuze Jin, Monica Steffi Matchado, Maximilian Zwiebel, Fujii Asami, Michael Lauber, Ilias Lagkouvardos, Jan Baumbach, Dirk Haller, Beate Brandl, Thomas Skurk, Hans Hauner, Sandra Reitmeier, Markus List	2022	10
9	The limits of molecular signatures for pancreatic ductal adenocarcinoma subtyping NAR Cancer ·Sainct-Chaman. Auteur du texte, Jan Baumbach, Wilko Weichert, Katja Steiger, Markus List, Nicole Pfarr, Tim Kacprowski	2022	4
10	Platelet Surface Protein Expression and Reactivity upon TRAP Stimulation after BNT162b2 Vaccination Thrombosis and Haemostasis ·David Meredith, Olga Lazareva, Şenel İhya Tutmaz, Marc Rosenbaum, Marina Lukas, Avinash G. Vishakantegowda, Christoph D. Spinner, Moritz von Scheidt, ジェフリーベイリス, Jan Baumbach, Jürgen Ruland, Gianluigi Condorelli, Karl‐Ludwig Laugwitz, Markus List, Isabell Bernlochner, Dario Bongiovanni	2021	10
11	A systematic comparison of novel and existing differential analysis methods for CyTOF data Briefings in Bioinformatics ·Maria Carmela Filomena, Cheng Chen, M. Rodríguez Portugués, David Meredith, Olga Lazareva, Jan Baumbach, Dario Bongiovanni, Markus List	2021	8
12	DeepCLIP: predicting the effect of mutations on protein–RNA binding with deep learning Nucleic Acids Research ·Harry J. Bell, Thomas Koed Doktor, Simon J. Larsen, Fangyang Yuan, 富翠红, Gitte Hoffmann Bruun, D. Törőcsik, Derya Karabulut, Jan Baumbach, Brage Storstein Andresen	2020	63
13	De Novo and Supervised Endophenotyping Using Network-Guided Ensemble Learning Research Publications (Maastricht University) ·Simon J. Larsen, Harald Schmidt, Jan Baumbach	2020	9
14	Multiple Sclerosis Atlas: A Molecular Map of Brain Lesion Stages in Progressive Multiple Sclerosis SHILAP Revista de lepidopterología ·Tobias Frisch, Maria L. Elkjaer, Richard Reynolds, Tanja Maria Michel, Tim Kacprowski, Mark Burton, Torben A. Kruse, Mads Thomassen, Jan Baumbach, Zsolt Illés	2020	17
15	Individuating Possibly Repurposable Drugs and Drug Targets for COVID-19 Treatment Through Hypothesis-Driven Systems Medicine Using CoVex Assay and Drug Development Technologies ·Julian Matschinske, Marisol Salgado-Albarrán, Sepideh Sadegh, Dario Bongiovanni, Jan Baumbach, David B. Blumenthal	2020	7
16	Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology Bioinformatics ·Gregor Sturm, Francesca Finotello, Florent Petitprez, Jitao David Zhang, Jan Baumbach, Wolf H. Fridman, Markus List, Tatsiana Aneichyk Hit paper breakdown →	2019	569
17	Expert Panel Discusses the Importance of Systems Medicine Harald Schmidt, Jan Baumbach, Joseph Loscalzo, Àlvar Agustí, Edwin K. Silverman, Vasco Azevedo	2018	2
18	The End of Medicine as We Know It: Introduction to the New Journal, Systems Medicine University of Southern Denmark Research Portal (University of Southern Denmark) ·Jan Baumbach, Harald Schmidt	2018	7
19	An application of electronic nose technology for diagnosis of Alzheimer's disease European Respiratory Journal ·Andreas Rembert Koczulla, Maike Gold, Akira Hattesohl, Stephen Webster, David Mengel, Severin Schmid, Björn Tackenberg, Jürgen Rieke, Sasidhar Maddula, Jan Baumbach, M. K. El-Sharh, Judith Alferink, Michael T. Heneka, Wolfgang H. Oertel, Frank Jessen, Sabina Janciauskiene, Claus Vogelmeier, Richard Dodel, Jan‐Philipp Bach	2013	1
20	Analysis of Bio‐Processes using Ion Mobility Spectrometry Engineering in Life Sciences ·Wolfgang Vautz, Jan Baumbach	2008	36

About Jan Baumbach

Jan Baumbach is a scholar working on Spectroscopy, Health Informatics, Molecular Biology, Behavioral Neuroscience and Biomedical Engineering, having authored 439 papers that have together received 13.2k indexed citations. Recurring topics across this work include Advanced Chemical Sensor Technologies (100 papers), Bioinformatics and Genomic Networks (65 papers), Analytical Chemistry and Chromatography (58 papers), Mass Spectrometry Techniques and Applications (49 papers), Gene expression and cancer classification (34 papers), Genomics and Phylogenetic Studies (31 papers), Metabolomics and Mass Spectrometry Studies (28 papers) and Respiratory viral infections research (28 papers). The work is most often cited by research in Spectroscopy (2.4k citations), Health Informatics (189 citations), Molecular Biology (5.4k citations), Biomedical Engineering (3.1k citations) and Microbiology (433 citations). Jan Baumbach has collaborated with scholars based in Germany, Denmark and United States. Frequent co-authors include Markus List, Wolfgang Vautz, Bertram Bödeker, Richard Röttger, Anne-Christin Hauschild, Josch K. Pauling, Tobias Wittkop, Stefanie Sielemann, Ann Thomas and Raquel Cumeras. Their work appears in journals such as Bioinformatics, Journal of Breath Research, Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics, Nucleic Acids Research and PLoS ONE.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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