Markus List

6.9k citations

106 papers · 3.1k indexed · 4 hit papers · h-index 25

Impact in

Cancer Research top 5%
- Cancer-related molecular mechanisms research
Molecular Biology top 5%
- Bioinformatics and Genomic Networks
- RNA modifications and cancer
- Gut microbiota and health
- Epigenetics and DNA Methylation
- Gene expression and cancer classification

Papers in ⓘ

Cancer Research 19
Biophysics 7

Co-authors: Jan Baumbach (62 shared papers)Gregor Sturm (7 shared papers)Francesca Finotello (5 shared papers)Harald Schmidt (5 shared papers)Zeinab M. Mamdouh (3 shared papers)Cristian Nogales (2 shared papers)Christina Kiel (1 shared paper)Ana I. Casas (3 shared papers)
Journals: Bioinformatics (16 papers)Nucleic Acids Research (9 papers)Briefings in Bioinformatics (6 papers)Scientific Reports (5 papers)Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics (3 papers)
Partner nations: Germany Denmark Italy

In The Last Decade

Markus List

96 papers receiving 3.1k citations

Hit Papers

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Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing 2021 · 270 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2021 mSphere
2021 Computational and Structural Biotechnology Journal
2021 Trends in Pharmacological Sciences
2019 Bioinformatics

Peers

Countries citing papers authored by Markus List

Since Specialization

Citations

This map shows the geographic impact of Markus List's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Markus List with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Markus List more than expected).

Fields of papers citing papers by Markus List

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Markus List. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Markus List. The network helps show where Markus List may publish in the future.

Co-authors

The 25 scholars most cited alongside Markus List, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Markus List Line = papers co-authored together Markus List links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 106 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Network pharmacology: curing causal mechanisms instead of treating symptoms Trends in Pharmacological Sciences ·Cristian Nogales, Zeinab M. Mamdouh, Markus List, Christina Kiel, Ana I. Casas, Harald Schmidt Hit paper breakdown →	2021	645
2	Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology Bioinformatics ·Gregor Sturm, Francesca Finotello, Florent Petitprez, Jitao David Zhang, Jan Baumbach, Wolf H. Fridman, Markus List, Tatsiana Aneichyk Hit paper breakdown →	2019	569
3	Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing mSphere ·Isabel Abellan-Schneyder, Monica Steffi Matchado, Sandra Reitmeier, Alina Sommer, Zeno Sewald, Jan Baumbach, Markus List, Klaus Neuhaus Hit paper breakdown →	2021	270
4	Network analysis methods for studying microbial communities: A mini review Computational and Structural Biotechnology Journal ·Monica Steffi Matchado, Michael Lauber, Sandra Reitmeier, Tim Kacprowski, Jan Baumbach, Dirk Haller, Markus List Hit paper breakdown →	2021	197
5	Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data Methods in molecular biology ·Gregor Sturm, Francesca Finotello, Markus List	2020	166
6	SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype Cell Death and Disease ·Dario Bongiovanni, Melissa Klug, Olga Lazareva, Simon Weidlich, Marina Pietro Biasi, Simona Ursu, Sarah Warth, Christian Buske, Marina Lukas, Christoph D. Spinner, Moritz von Scheidt, Gianluigi Condorelli, Jan Baumbach, Karl‐Ludwig Laugwitz, Markus List, Isabell Bernlochner	2021	71
7	Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedside Clinical Epigenetics ·Federica Sarno, Giuditta Benincasa, Markus List, Albert-Lázló Barabási, Jan Baumbach, Fortunato Ciardiello, Sébastiano Filetti, Kimberly Glass, Joseph Loscalzo, Cinzia Marchese, Bradley A. Maron, Paola Paci, Paolo Parini, Enrico Petrillo, Edwin K. Silverman, Antonella Verrienti, Lucia Altucci, Claudio Napoli	2021	54
8	Privacy-Preserving Artificial Intelligence Techniques in Biomedicine Methods of Information in Medicine ·Reihaneh Torkzadehmahani, Reza Nasirigerdeh, David B. Blumenthal, Tim Kacprowski, Markus List, Julian Matschinske, Julian Spaeth, Nina K. Wenke, Jan Baumbach	2022	50
9	Classification of Breast Cancer Subtypes by combining Gene Expression and DNA Methylation Data Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics ·Markus List, Anne-Christin Hauschild, Qihua Tan, Torben A. Kruse, Jan Baumbach, Richa Batra	2014	46
10	On the limits of 16S rRNA gene-based metagenome prediction and functional profiling Microbial Genomics ·Monica Steffi Matchado, Malte Rühlemann, Sandra Reitmeier, Tim Kacprowski, Fabian Frost, Dirk Haller, Jan Baumbach, Markus List	2024	46
11	De novo pathway-based biomarker identification Nucleic Acids Research ·Nicolás Alcaraz, Markus List, Richa Batra, Fabio Vandin, Henrik J. Ditzel, Jan Baumbach	2017	38
12	Quantitative comparison of within-sample heterogeneity scores for DNA methylation data Nucleic Acids Research ·Michael Scherer, Almut Nebel, André Franke, Jörn Walter, Thomas Lengauer, Christoph Bock, Fabian Müller, Markus List	2020	38
13	DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets Nucleic Acids Research ·Felipe Albrecht, Markus List, Christoph Bock, Thomas Lengauer	2016	37
14	KeyPathwayMinerWeb: online multi-omics network enrichment Nucleic Acids Research ·Markus List, Nicolás Alcaraz, Martin Dissing-Hansen, Henrik J. Ditzel, Jan Mollenhauer, Jan Baumbach	2016	37
15	On the performance of de novo pathway enrichment npj Systems Biology and Applications ·Richa Batra, Nicolás Alcaraz, Kevin Gitzhofer, Josch K. Pauling, Henrik J. Ditzel, Marc Hellmuth, Jan Baumbach, Markus List	2017	37
16	PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells Cell Reports ·Markus Flosbach, Susanne Oberle, Stefanie Scherer, Jana Zecha, Madlaina von Hoesslin, Florian Wiede, Vijaykumar Chennupati, Jolie G. Cullen, Markus List, Josch K. Pauling, Jan Baumbach, Bernhard Küster, Tony Tiganis, Dietmar Zehn	2020	35
17	Guiding questions to avoid data leakage in biological machine learning applications Nature Methods ·Judith Bernett, David B. Blumenthal, Dominik G. Grimm, Florian Haselbeck, Roman Joeres, Olga V. Kalinina, Markus List	2024	33
18	Hepatocellular Carcinoma and Nuclear Paraspeckles: Induction in Chemoresistance and Prediction for Poor Survival Cellular Physiology and Biochemistry ·Sonja M. Kessler, Kevan Hosseini, Usama Khamis Hussein, Kyoung Min Kim, Markus List, Christina S. Schultheiss, Marcel H. Schulz, Stephan Laggai, Kyu Yun Jang, Alexandra K. Kiemer	2019	32
19	Large-scale inference of competing endogenous RNA networks with sparse partial correlation Bioinformatics ·Markus List, Azim Dehghani Amirabad, Dennis Kostka, Marcel H. Schulz	2019	30
20	Cracking the black box of deep sequence-based protein–protein interaction prediction Briefings in Bioinformatics ·Judith Bernett, David B. Blumenthal, Markus List	2024	29

About Markus List

Markus List is a scholar working on Cancer Research, Biophysics, Molecular Biology, Health Informatics and Computational Theory and Mathematics, having authored 106 papers that have together received 3.1k indexed citations. Recurring topics across this work include Bioinformatics and Genomic Networks (28 papers), Gene expression and cancer classification (21 papers), RNA modifications and cancer (11 papers), Gene Regulatory Network Analysis (11 papers), Single-cell and spatial transcriptomics (11 papers), RNA Research and Splicing (10 papers), Computational Drug Discovery Methods (10 papers) and Gut microbiota and health (10 papers). The work is most often cited by research in Cancer Research (553 citations), Molecular Biology (1.9k citations), Health Informatics (26 citations), Pharmacology (159 citations) and Immunology (350 citations). Markus List has collaborated with scholars based in Germany, Denmark and Italy. Frequent co-authors include Jan Baumbach, Gregor Sturm, Francesca Finotello, Harald Schmidt, Zeinab M. Mamdouh, Cristian Nogales, Christina Kiel, Ana I. Casas, Jitao David Zhang and Florent Petitprez. Their work appears in journals such as Bioinformatics, Nucleic Acids Research, Briefings in Bioinformatics, Scientific Reports and Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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