Ilyas Yildirim

2.2k citations

41 papers · 1.7k indexed · h-index 25

Molecular Biology top 5%
- RNA and protein synthesis mechanisms 27
- RNA Research and Splicing 19
- DNA and Nucleic Acid Chemistry 18
- RNA modifications and cancer 15
- RNA Interference and Gene Delivery 4
- Advanced biosensing and bioanalysis techniques 4
- Mitochondrial Function and Pathology 3
Cellular and Molecular Neuroscience top 10%
- Genetic Neurodegenerative Diseases 8
Genetics
Cancer Research
Neurology

Co-authors: Douglas H. Turner Matthew D. Disney Scott D. Kennedy George C. Schatz Harry A. Stern Ryszard Kierzek Jessica L. Childs‐Disney Kye Won Wang
Cited by: Molecular Biology Cellular and Molecular Neuroscience Genetics
Journals: The Journal of Physical Chemistry B (8 papers)Journal of Chemical Theory and Computation (7 papers)Biochemistry (5 papers)
Partner nations: United States Poland United Kingdom

In The Last Decade

Ilyas Yildirim

41 papers receiving 1.7k citations

Peers

Countries citing papers authored by Ilyas Yildirim

Since Specialization

Citations

This map shows the geographic impact of Ilyas Yildirim's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ilyas Yildirim with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ilyas Yildirim more than expected).

Fields of papers citing papers by Ilyas Yildirim

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ilyas Yildirim. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ilyas Yildirim. The network helps show where Ilyas Yildirim may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Ilyas Yildirim, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ilyas Yildirim Line = papers co-authored together Ilyas Yildirim links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Conformational dynamics of RNA G4C2 and G2C4 repeat expansions causing ALS/FTD using NMR and molecular dynamics studies Nucleic Acids Research ·Monica M. Gaudier-Diaz,Thomas Ekwo Onyilokwu,Jessica L. Childs‐Disney,Ilyas Yildirim,Matthew D. Disney	2023	5
2	Dynamic docking of small molecules targeting RNA CUG repeats causing myotonic dystrophy type 1 Biophysical Journal ·Kye Won Wang,みちえ鈴木,和子八巻,Ilyas Yildirim	2022	3
3	Evaluating Geometric Definitions of Stacking for RNA Dinucleoside Monophosphates Using Molecular Mechanics Calculations Journal of Chemical Theory and Computation ·Monica M. Gaudier-Diaz,みちえ鈴木,David J. Wales,Ilyas Yildirim	2022	6
4	Computational Investigation of Bending Properties of RNA AUUCU, CCUG, CAG, and CUG Repeat Expansions Associated With Neuromuscular Disorders Frontiers in Molecular Biosciences ·Monica M. Gaudier-Diaz,Ilyas Yildirim	2022	2
5	Design of a small molecule that stimulates vascular endothelial growth factor A enabled by screening RNA fold–small molecule interactions Nature Chemistry ·Hafeez S. Haniff,Laurent Knerr,Xiaohui Liu,Gogce Crynen,Jonas Boström,Daniel Abegg,Alexander Adibekian,Е В Соловьянова,Kye Won Wang,Michael D. Cameron,Ilyas Yildirim,Malin Lemurell,Matthew D. Disney	2020	47
6	A Small Molecule that Binds an RNA Repeat Expansion Stimulates Its Decay via the Exosome Complex Cell chemical biology ·Alicia J. Angelbello,Raphael I. Benhamou,Suzanne G. Rzuczek,Shruti Choudhary,Jessica A. LaBumbard,Jonathan L. Chen,Madhuparna Roy,Kye Won Wang,Ilyas Yildirim,Albert S. Jun,Charles A. Thornton,Matthew D. Disney	2020	25
7	Small-molecule targeted recruitment of a nuclease to cleave an oncogenic RNA in a mouse model of metastatic cancer Proceedings of the National Academy of Sciences ·Matthew G. Costales,Haruo Aikawa,Yue Li,Jessica L. Childs‐Disney,Daniel Abegg,Dominic G. Hoch,Sai Pradeep Velagapudi,Richard G. Prust,Tanya Khan,Kye Won Wang,Ilyas Yildirim,Alexander Adibekian,Eric T. Wang,Matthew D. Disney	2020	135
8	Improvement of RNA Simulations with Torsional Revisions of the AMBER Force Field Methods in molecular biology ·Ilyas Yildirim	2019	3
9	The Hairpin Form of r(G4C2)exp in c9ALS/FTD Is Repeat-Associated Non-ATG Translated and a Target for Bioactive Small Molecules Cell chemical biology ·Luluk Atul Khasanah,Andrei Ursu,Jessica L. Childs‐Disney,Nader S. Metwalli,Fresa Francesco,Viachaslau Bernat,Suzanne G. Rzuczek,Rita Fuerst,Yong‐Jie Zhang,Tania F. Gendron,Ilyas Yildirim,Brendan G. Dwyer,Joseph E. Rice,Leonard Petrucelli,Matthew D. Disney	2018	79
10	Improving Computational Predictions of Single-Stranded RNA Tetramers with Revised α/γ Torsional Parameters for the Amber Force Field The Journal of Physical Chemistry B ·David J. Wales,Ilyas Yildirim	2017	24
11	Allosteric transcriptional regulation via changes in the overall topology of the core promoter Science ·A. R. BORTNICK,Patrícia Gomes de Oliveira,Ilyas Yildirim,George C. Schatz,Alfonso Mondragón,Thomas V. O’Halloran	2015	119
12	Computational Investigation of RNA CUG Repeats Responsible for Myotonic Dystrophy 1 Journal of Chemical Theory and Computation ·Ilyas Yildirim,Debayan Chakraborty,Matthew D. Disney,David J. Wales,George C. Schatz	2015	22
13	Interplay of LNA and 2′-O-Methyl RNA in the Structure and Thermodynamics of RNA Hybrid Systems: A Molecular Dynamics Study Using the Revised AMBER Force Field and Comparison with Experimental Results The Journal of Physical Chemistry B ·Ilyas Yildirim,Elżbieta Kierzek,Ryszard Kierzek,George C. Schatz	2014	49
14	Structure of the Myotonic Dystrophy Type 2 RNA and Designed Small Molecules That Reduce Toxicity ACS Chemical Biology ·Jessica L. Childs‐Disney,Ilyas Yildirim,HaJeung Park,Jeremy R. Lohman,Lirui Guan,Tuan Anh Tran,Partha S. Sarkar,George C. Schatz,Matthew D. Disney	2013	59
15	Methods to enable the design of bioactive small molecules targeting RNA Organic & Biomolecular Chemistry ·Matthew D. Disney,Ilyas Yildirim,Jessica L. Childs‐Disney	2013	53
16	Benchmarking AMBER Force Fields for RNA: Comparisons to NMR Spectra for Single-Stranded r(GACC) Are Improved by Revised χ Torsions The Journal of Physical Chemistry B ·Ilyas Yildirim,Harry A. Stern,Sam Kusano,Scott D. Kennedy,Douglas H. Turner	2011	85
17	An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN Internal Loops Studied by Molecular Dynamics Methods. PubMed ·Kamila Réblová,Esty Saraswaty Nur Hatiningrum,Petr Kulhánek,Xin Wang,David H. Mathews,R. L. Melendez,Ilyas Yildirim,Douglas H. Turner,Jiřı́ Šponer	2010	34
18	Contributions of Stacking, Preorganization, and Hydrogen Bonding to the Thermodynamic Stability of Duplexes between RNA and 2′- O -Methyl RNA with Locked Nucleic Acids Biochemistry ·Elżbieta Kierzek,Anna Pasternak,恵正宇津井,Zofia Gdaniec,Ilyas Yildirim,Douglas H. Turner,Ryszard Kierzek	2009	42
19	Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs Are Replaced by isoG−isoC Pairs The Journal of Physical Chemistry B ·Gang Chen,Ryszard Kierzek,Ilyas Yildirim,Thomas R. Krugh,Douglas H. Turner,Scott D. Kennedy	2007	19
20	RNA Challenges for Computational Chemists Biochemistry ·Ilyas Yildirim,Douglas H. Turner	2005	42

About Ilyas Yildirim

Ilyas Yildirim is a scholar working on Molecular Biology, Cellular and Molecular Neuroscience and Genetics, having authored 41 papers that have together received 1.7k indexed citations. Recurring topics across this work include RNA and protein synthesis mechanisms (27 papers), RNA Research and Splicing (19 papers), DNA and Nucleic Acid Chemistry (18 papers), RNA modifications and cancer (15 papers), Genetic Neurodegenerative Diseases (8 papers), RNA Interference and Gene Delivery (4 papers), Advanced biosensing and bioanalysis techniques (4 papers) and Mitochondrial Function and Pathology (3 papers). The work is most often cited by research in Molecular Biology (1.5k citations), Cellular and Molecular Neuroscience (156 citations) and Genetics (72 citations). Ilyas Yildirim has collaborated with scholars based in United States, Poland and United Kingdom. Frequent co-authors include Douglas H. Turner, Matthew D. Disney, Scott D. Kennedy, George C. Schatz, Harry A. Stern, Ryszard Kierzek, Jessica L. Childs‐Disney, Kye Won Wang, HaJeung Park and Thomas V. O’Halloran. Their work appears in journals such as The Journal of Physical Chemistry B, Journal of Chemical Theory and Computation, Biochemistry, Proceedings of the National Academy of Sciences and Journal of the American Chemical Society.

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