Emiley A. Eloe‐Fadrosh

17.7k total citations · 7 hit papers
71 papers, 5.9k citations indexed

About

Emiley A. Eloe‐Fadrosh is a scholar working on Ecology, Molecular Biology and Plant Science. According to data from OpenAlex, Emiley A. Eloe‐Fadrosh has authored 71 papers receiving a total of 5.9k indexed citations (citations by other indexed papers that have themselves been cited), including 55 papers in Ecology, 47 papers in Molecular Biology and 15 papers in Plant Science. Recurrent topics in Emiley A. Eloe‐Fadrosh's work include Microbial Community Ecology and Physiology (37 papers), Genomics and Phylogenetic Studies (35 papers) and Bacteriophages and microbial interactions (24 papers). Emiley A. Eloe‐Fadrosh is often cited by papers focused on Microbial Community Ecology and Physiology (37 papers), Genomics and Phylogenetic Studies (35 papers) and Bacteriophages and microbial interactions (24 papers). Emiley A. Eloe‐Fadrosh collaborates with scholars based in United States, Australia and Canada. Emiley A. Eloe‐Fadrosh's co-authors include Nikos C. Kyrpides, Simon Roux, Natalia Ivanova, Frederik Schulz, Stephen Nayfach, Tanja Woyke, Antônio Pedro Camargo, Marcel Huntemann, David Páez-Espino and I-Min A. Chen and has published in prestigious journals such as Nature, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Emiley A. Eloe‐Fadrosh

66 papers receiving 5.9k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

CheckV assesses the quality and completeness of metagenome-assembled viral genomes

2020 905 citations Stephen Nayfach, Frederik Schulz et al. profile →
Uncovering Earth’s virome

2016 719 citations David Páez-Espino, Emiley A. Eloe‐Fadrosh et al. profile →
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

2018 583 citations I-Min A. Chen, Marcel Huntemann et al. Nucleic Acids Research profile →
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

2020 287 citations I-Min A. Chen, Marcel Huntemann et al. Nucleic Acids Research profile →
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses

2020 221 citations Simon Roux, David Páez-Espino et al. Nucleic Acids Research profile →
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata

2022 199 citations Stephen Nayfach, I-Min A. Chen et al. Nucleic Acids Research profile →
Microbes and Climate Change: a Research Prospectus for the Future

2022 103 citations James M. Tiedje, Arturo Casadevall et al. mBio profile →

Peers

Countries citing papers authored by Emiley A. Eloe‐Fadrosh

Since Specialization

Citations

This map shows the geographic impact of Emiley A. Eloe‐Fadrosh's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Emiley A. Eloe‐Fadrosh with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Emiley A. Eloe‐Fadrosh more than expected).

Fields of papers citing papers by Emiley A. Eloe‐Fadrosh

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Emiley A. Eloe‐Fadrosh. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Emiley A. Eloe‐Fadrosh. The network helps show where Emiley A. Eloe‐Fadrosh may publish in the future.

Co-authorship network of co-authors of Emiley A. Eloe‐Fadrosh

This figure shows the co-authorship network connecting the top 25 collaborators of Emiley A. Eloe‐Fadrosh. A scholar is included among the top collaborators of Emiley A. Eloe‐Fadrosh based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Emiley A. Eloe‐Fadrosh. Emiley A. Eloe‐Fadrosh is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	A standards perspective on genomic data reusability and reproducibility 2025 ·Frontiers in Bioinformatics ·Ishi Keenum, Scott A. Jackson, Emiley A. Eloe‐Fadrosh, Lynn M. Schriml	3
2	A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics 2024 ·Methods in molecular biology ·Emiley A. Eloe‐Fadrosh, Chris Mungall, Mark A. Miller, (unknown), (unknown), (unknown), L. Johnson, (unknown), Patrick Chain, Bin Hu, (unknown), Lee Ann McCue, Alice C. McHardy, Nomi L. Harris, T. B. K. Reddy, Supratim Mukherjee, Chris Hunter, Ramona Walls, Lynn M. Schriml	3
3	Genomes OnLine Database (GOLD) v.10: new features and updates 2024 ·Nucleic Acids Research ·Supratim Mukherjee, Dimitri Stamatis, (unknown), Galina Ovchinnikova, (unknown), (unknown), (unknown), Natalia Ivanova, Tanja Woyke, Emiley A. Eloe‐Fadrosh, I-Min A. Chen, Nikos C. Kyrpides, T. B. K. Reddy	9
4	Metatranscriptomes of California grassland soil microbial communities in response to rewetting 2024 ·Microbiology Resource Announcements ·Peter F. Chuckran, Katerina Estera‐Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T. B. K. Reddy, Chris Daum, I-Min A. Chen, Christa Pennacchio, Emiley A. Eloe‐Fadrosh, Paul Dijkstra, Mary K. Firestone, Steven J. Blazewicz, Jennifer Pett‐Ridge	1
5	A standardized quantitative analysis strategy for stable isotope probing metagenomics 2023 ·mSystems ·(unknown), (unknown), Kanwar Singh, (unknown), W. Berkeley Kauffman, Erin Nuccio, Steven J. Blazewicz, Jennifer Pett‐Ridge, Katherine Louie, Neha Varghese, Matthew Kellom, Alicia Clum, Robert Riley, Simon Roux, Emiley A. Eloe‐Fadrosh, Ryan Ziels, Rex R. Malmstrom	8
6	Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report 2023 ·Astrobiology ·Stefan J. Green, Tamás Török, Jonathan Allen, Emiley A. Eloe‐Fadrosh, Scott A. Jackson, Sunny C. Jiang, Stuart S. Levine, Shawn Levy, Lynn M. Schriml, W. Kelley Thomas, Jason M. Wood, Scott Tighe	2
7	Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms 2023 ·Data in Brief ·(unknown), Kerrie Barry, Chris Daum, Emiley A. Eloe‐Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus-Ulrich Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Möck	0
8	Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long‐term warming 2022 ·Global Change Biology ·Luiz A. Domeignoz‐Horta, Grace Pold, (unknown), David Sebag, Éric P. Verrecchia, Trent R. Northen, Katherine Louie, Emiley A. Eloe‐Fadrosh, Christa Pennacchio, Melissa A. Knorr, Serita D. Frey, Jerry M. Melillo, Kristen M. DeAngelis	45
9	Microbes and Climate Change: a Research Prospectus for the Future breakdown → 2022 ·mBio ·James M. Tiedje, (unknown), Arturo Casadevall, Craig S. Criddle, Emiley A. Eloe‐Fadrosh, David M. Karl, Nguyen K. Nguyen, Jizhong Zhou	103
10	Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans 2022 ·Microbiome ·(unknown), Kerrie Barry, Chris Daum, Emiley A. Eloe‐Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus-Ulrich Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Möck	26
11	Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions 2021 ·The ISME Journal ·Maureen Berg, Danielle Goudeau, (unknown), Katherine D. McMahon, (unknown), (unknown), Donald A. Bryant, Emiley A. Eloe‐Fadrosh, Rex R. Malmstrom, Simon Roux	18
12	Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution 2021 ·The ISME Journal ·Robert M. Bowers, Stephen Nayfach, Frederik Schulz, Sean P. Jungbluth, (unknown), (unknown), Janey Lee, Danielle Goudeau, Emiley A. Eloe‐Fadrosh, Ramūnas Stepanauskas, Rex R. Malmstrom, Nikos C. Kyrpides, Peter F. Dunfield, Tanja Woyke	23
13	Ecology and molecular targets of hypermutation in the global microbiome 2021 ·Nature Communications ·Simon Roux, Blair G. Paul, Sarah C. Bagby, Stephen Nayfach, Michelle A. Allen, Graeme T. Attwood, Ricardo Cavicchioli, Ludmila Chistoserdova, Robert J. Gruninger, Steven Hallam, Maria Hernandez, Matthias Hess, Wen‐Tso Liu, Tim A. McAllister, Michelle O’Malley, Xuefeng Peng, Virginia I. Rich, S. R. Saleska, Emiley A. Eloe‐Fadrosh	43
14	Insights into the dynamics between viruses and their hosts in a hot spring microbial mat 2020 ·The ISME Journal ·(unknown), Mária Džunková, Frederik Schulz, Simon Roux, David Páez-Espino, Emiley A. Eloe‐Fadrosh, Sean P. Jungbluth, Natalia Ivanova, John R. Spear, Stephanie Carr, (unknown), Frank A. Corsetti, Hope A. Johnson, Eric D. Becraft, Nikos C. Kyrpides, Ramūnas Stepanauskas, Tanja Woyke	47
15	COVID-19 pandemic reveals the peril of ignoring metadata standards 2020 ·Scientific Data ·Lynn M. Schriml, Maria Chuvochina, Neil Davies, Emiley A. Eloe‐Fadrosh, ROBERT FINN, Philip Hugenholtz, Chris Hunter, Bonnie L. Hurwitz, Nikos C. Kyrpides, Folker Meyer, Ilene Karsch‐Mizrachi, Susanna‐Assunta Sansone, Granger Sutton, Scott Tighe, Ramona Walls	51
16	In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay 2020 ·Microbial Ecology ·(unknown), Julian Damashek, Emiley A. Eloe‐Fadrosh, Christopher Francis	12
17	Terabase-scale metagenome coassembly with MetaHipMer 2020 ·Scientific Reports ·Steven Hofmeyr, Rob Egan, Evangelos Georganas, Alex Copeland, Robert Riley, Alicia Clum, Emiley A. Eloe‐Fadrosh, Simon Roux, Eugene Goltsman, Aydın Buluç, Daniel S. Rokhsar, Leonid Oliker, Katherine Yelick	31
18	Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes 2019 ·Nature Microbiology ·Simon Roux, Mart Krupovìč, Rebecca A. Daly, Adair L. Borges, Stephen Nayfach, Frederik Schulz, Allison Sharrar, Paula B. Matheus Carnevali, Jan‐Fang Cheng, Natalia Ivanova, Joseph Bondy‐Denomy, Kelly Wrighton, Tanja Woyke, Axel Visel, Nikos C. Kyrpides, Emiley A. Eloe‐Fadrosh	162
19	Genome gazing in ammonia-oxidizing archaea 2019 ·Nature Reviews Microbiology ·Emiley A. Eloe‐Fadrosh	1
20	Aerosol Mycobacterium tuberculosis Infection Causes Rapid Loss of Diversity in Gut Microbiota 2014 ·PLoS ONE ·Kathryn Winglee, Emiley A. Eloe‐Fadrosh, Shashank Gupta, Haidan Guo, Claire M. Fraser, William R. Bishai	103

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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