Benjamin Bolduc

9.3k total citations · 6 hit papers
33 papers, 4.2k citations indexed

About

Benjamin Bolduc is a scholar working on Ecology, Molecular Biology and Plant Science. According to data from OpenAlex, Benjamin Bolduc has authored 33 papers receiving a total of 4.2k indexed citations (citations by other indexed papers that have themselves been cited), including 32 papers in Ecology, 20 papers in Molecular Biology and 12 papers in Plant Science. Recurrent topics in Benjamin Bolduc's work include Bacteriophages and microbial interactions (27 papers), Genomics and Phylogenetic Studies (17 papers) and Plant Virus Research Studies (12 papers). Benjamin Bolduc is often cited by papers focused on Bacteriophages and microbial interactions (27 papers), Genomics and Phylogenetic Studies (17 papers) and Plant Virus Research Studies (12 papers). Benjamin Bolduc collaborates with scholars based in United States, France and Australia. Benjamin Bolduc's co-authors include Matthew B. Sullivan, Simon Roux, Ahmed A. Zayed, Dean Vik, Mark Young, Olivier Zablocki, María Consuelo Gazitúa, Ho Bin Jang, Guillermo Domínguez‐Huerta and Ann Gregory and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Benjamin Bolduc

31 papers receiving 4.1k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses

2021 682 citations Jiarong Guo, Benjamin Bolduc et al. Microbiome profile →
DRAM for distilling microbial metabolism to automate the curation of microbiome function

2020 580 citations Bridget B. McGivern, Ahmed A. Zayed et al. profile →
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks

2019 572 citations Ho Bin Jang, Benjamin Bolduc et al. Nature Biotechnology profile →
The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut

2020 407 citations Ann Gregory, Olivier Zablocki et al. Cell Host & Microbe profile →
Healthy human gut phageome

2016 396 citations Benjamin Bolduc, Mark Young et al. profile →
Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

2018 251 citations Gareth Trubl, Ho Bin Jang et al. mSystems profile →

Peers

Countries citing papers authored by Benjamin Bolduc

Since Specialization

Citations

This map shows the geographic impact of Benjamin Bolduc's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Benjamin Bolduc with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Benjamin Bolduc more than expected).

Fields of papers citing papers by Benjamin Bolduc

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Benjamin Bolduc. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Benjamin Bolduc. The network helps show where Benjamin Bolduc may publish in the future.

Co-authorship network of co-authors of Benjamin Bolduc

This figure shows the co-authorship network connecting the top 25 collaborators of Benjamin Bolduc. A scholar is included among the top collaborators of Benjamin Bolduc based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Benjamin Bolduc. Benjamin Bolduc is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Machine learning enables scalable and systematic hierarchical virus taxonomy 2025 ·Nature Biotechnology ·Benjamin Bolduc, Olivier Zablocki, Dann Turner, Ho Bin Jang, Jiarong Guo, Evelien M. Adriaenssens, Bas E. Dutilh, Matthew B. Sullivan	0
2	CLAE: A High‐Fidelity Nanopore Sequencing Strategy for Read‐Level Viral Variant Detection and Environmental RNA Virus Discovery 2025 ·Advanced Science ·Hannah Yu, (unknown), (unknown), Dong Xue, Guillermo Domínguez‐Huerta, James M. Wainaina, Benjamin Bolduc, (unknown), (unknown), Seth A. Faith, Shan‐Lu Liu, Ji‐Young Lee, Michael Oglesbee, Matthew B. Sullivan, Sanggu Kim	0
3	Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient 2024 ·Environmental Microbiology ·Christine Sun, Akbar Adjie Pratama, María Consuelo Gazitúa, Dylan Cronin, Bridget B. McGivern, James M. Wainaina, Dean Vik, Ahmed A. Zayed, Benjamin Bolduc, (unknown), Kelly Wrighton, Virginia I. Rich, Matthew B. Sullivan	4
4	MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets 2023 ·ISME Communications ·Dean Vik, Benjamin Bolduc, Simon Roux, Christine Sun, Akbar Adjie Pratama, Mart Krupovìč, Matthew B. Sullivan	4
5	MetaPop: a pipeline for macro- and microdiversity analyses and visualization of microbial and viral metagenome-derived populations 2022 ·Microbiome ·Ann Gregory, (unknown), Zhi-Ping Zhong, Benjamin Bolduc, Ben Temperton, Konstantinos T. Konstantinidis, Matthew B. Sullivan	29
6	VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses breakdown → 2021 ·Microbiome ·Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Domínguez‐Huerta, Tom O. Delmont, Akbar Adjie Pratama, María Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux	682
7	Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation 2021 ·PeerJ ·Akbar Adjie Pratama, Benjamin Bolduc, Ahmed A. Zayed, Zhi-Ping Zhong, Jiarong Guo, Dean Vik, María Consuelo Gazitúa, James M. Wainaina, Simon Roux, Matthew B. Sullivan	73
8	Cenote-Taker 2 democratizes virus discovery and sequence annotation 2020 ·Virus Evolution ·Michael J. Tisza, (unknown), Guillermo Domínguez‐Huerta, Benjamin Bolduc, Christopher B. Buck	91
9	Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters 2020 ·The ISME Journal ·María Consuelo Gazitúa, Dean Vik, Simon Roux, Ann Gregory, Benjamin Bolduc, Brittany Widner, Margaret R. Mulholland, Steven Hallam, Osvaldo Ulloa, Matthew B. Sullivan	95
10	The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut breakdown → 2020 ·Cell Host & Microbe ·Ann Gregory, Olivier Zablocki, Ahmed A. Zayed, (unknown), Benjamin Bolduc, Matthew B. Sullivan	407
11	The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research 2020 ·PeerJ ·Benjamin Bolduc, Suzanne B. Hodgkins, R. K. Varner, Patrick Crill, C. K. McCalley, Jeffrey P. Chanton, Gene W. Tyson, W. J. Riley, Michael Palace, Melissa B. Duhaime, (unknown), (unknown), S. R. Saleska, Matthew B. Sullivan, Virginia I. Rich	6
12	Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks breakdown → 2019 ·Nature Biotechnology ·Ho Bin Jang, Benjamin Bolduc, Olivier Zablocki, Jens H. Kuhn, Simon Roux, Evelien M. Adriaenssens, J. Rodney Brister, Andrew M. Kropinski, Mart Krupovìč, Rob Lavigne, Dann Turner, Matthew B. Sullivan	572
13	Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils 2019 ·PeerJ ·Gareth Trubl, Simon Roux, Natalie Solonenko, (unknown), Benjamin Bolduc, Josué Rodríguez-Ramos, Emiley A. Eloe‐Fadrosh, Virginia I. Rich, Matthew B. Sullivan	43
14	Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing breakdown → 2018 ·mSystems ·Gareth Trubl, Ho Bin Jang, Simon Roux, Joanne Emerson, Natalie Solonenko, Dean Vik, Lindsey Solden, Jared Ellenbogen, (unknown), Benjamin Bolduc, Ben J. Woodcroft, S. R. Saleska, Gene W. Tyson, Kelly Wrighton, Matthew B. Sullivan, Virginia I. Rich	251
15	Single-virus genomics reveals hidden cosmopolitan and abundant viruses 2017 ·Nature Communications ·Francisco Martinez‐Hernández, Òscar Fornas, Mónica Lluesma Gómez, Benjamin Bolduc, (unknown), Joaquín Martínez Martínez, (unknown), Josep M. Gasol, Riccardo Rosselli, Francisco Rodríguez‐Valera, Matthew B. Sullivan, Silvia G. Acinas, Manuel Martínez‐García	139
16	Putative archaeal viruses from the mesopelagic ocean 2017 ·PeerJ ·Dean Vik, Simon Roux, Jennifer R. Brum, Benjamin Bolduc, Joanne Emerson, Cory C. Padilla, Frank J. Stewart, Matthew B. Sullivan	37
17	iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure 2016 ·The ISME Journal ·Benjamin Bolduc, Ken Youens‐Clark, Simon Roux, Bonnie L. Hurwitz, Matthew B. Sullivan	78
18	40 Years of archaeal virology: Expanding viral diversity 2015 ·Virology ·Jamie C. Snyder, Benjamin Bolduc, Mark Young	36
19	Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs 2015 ·Microbial Ecology ·Peter Menzel, Soley Gudbergsdottir, Anne Gunn Rike, Lian‐Bing Lin, Qi Zhang, Patrizia Contursi, Marco Moracci, Jakob K. Kristjánsson, Benjamin Bolduc, Sergey N. Gavrilov, Nikolai V. Ravin, Andrey V. Mardanov, E. A. Bonch-Osmolovskaya, Mark Young, Anders Krogh, Xu Peng	90
20	A target-unrelated peptide in an M13 phage display library traced to an advantageous mutation in the gene II ribosome-binding site 2007 ·Analytical Biochemistry ·(unknown), Benjamin Bolduc, (unknown), (unknown), Christopher J. Noren, (unknown)	60

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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