Jared T. Simpson

59.5k citations

32 papers · 7.3k indexed · 5 hit papers · h-index 20

Molecular Biology top 1%
- Genomics and Phylogenetic Studies 14
- RNA and protein synthesis mechanisms 10
- RNA modifications and cancer 8
- Genomics and Chromatin Dynamics 4
- Epigenetics and DNA Methylation 3
Ecology top 1%
Plant Science top 1%
Genetics top 2%
Endocrinology top 2%
Infectious Diseases
- SARS-CoV-2 and COVID-19 Research 5
Artificial Intelligence
- Algorithms and Data Compression 4
Biomedical Engineering
- Nanopore and Nanochannel Transport Studies 3

Co-authors: Nicholas J. Loman Shaun D. Jackman Steven J.M. Jones Kim Wong İnanç Birol Jacqueline E. Schein Richard Durbin Joshua Quick
Cited by: Molecular Biology Ecology Plant Science
Journals: Nature Methods (4 papers)Bioinformatics (4 papers)Genome Research (4 papers)
Partner nations: Canada United Kingdom United States

In The Last Decade

Jared T. Simpson

31 papers receiving 7.2k citations

Hit Papers

5 papers align trajectories log scale

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

2017 Nature Methods
2017 Nature Biotechnology
2015 Nature Methods
2011 Genome Research
2009 Genome Research

Peers

Countries citing papers authored by Jared T. Simpson

Since Specialization

Citations

This map shows the geographic impact of Jared T. Simpson's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jared T. Simpson with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jared T. Simpson more than expected).

Fields of papers citing papers by Jared T. Simpson

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jared T. Simpson. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jared T. Simpson. The network helps show where Jared T. Simpson may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Jared T. Simpson, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jared T. Simpson Line = papers co-authored together Jared T. Simpson links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Detecting Protein-DNA binding in single molecules using antibody guided methylation Epigenetics & Chromatin ·D D'Arrigo,Jefferson Souza Dias,Michael R. Erdos,Isac Lee,Jared T. Simpson,Winston Timp,Francis S. Collins,Daniel Z. Bar	2025	0
2	Prevalence of Low-Frequency, Antiviral Resistance Variants in SARS-CoV-2 Isolates in Ontario, Canada, 2020-2023 JAMA Network Open ·Calvin Sjaarda,Lynette Lau,Jared T. Simpson,Ramzi Fattouh,Mia J. Biondi,Finlay Maguire,Aaron Campigotto,Kara Anne Strand,Martha Gilman Bower,Ao Li,Wilson W. L. Sung,Sean Kim,Christian R. Marshall,Prameet M. Sheth,Robert Kozak	2023	5
3	Coronavirus disease 2019 (COVID-19) outbreak on an in-patient medical unit associated with unrecognized exposures in common areas—Epidemiological and whole-genome sequencing investigation Infection Control and Hospital Epidemiology ·Dylan Kain,Sandra Isabel,Yipo Xiao,MoonJune Oh,Richard de Borja,Madelyn M Seemiller,Bernard Lam,長柄英男,Ilinca M. Lungu,Liz McCreight,Allison McGeer,Tony Mazzulli,Aimee Paterson,Philip C. Zuzarte,Carolina Akiko Sato Cabral de Araújo,Linda Sunde,Ramzi Fattouh,Jared T. Simpson,Jennie Johnstone	2023	1
4	Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada Scientific Reports ·Sandra Isabel,Yipo Xiao,MoonJune Oh,Marc R. Isabel,Richard de Borja,Philip C. Zuzarte,Calvin Sjaarda,Kevin R. Barker,Prameet M. Sheth,Larissa Matukas,Jonathan B. Gubbay,Allison McGeer,Samira Mubareka,Jared T. Simpson,Ramzi Fattouh	2022	10
5	A Novel Approach to Detect IDH Point Mutations in Gliomas Using Nanopore Sequencing Journal of Molecular Diagnostics ·S. Khan,Eddy Priantob,Jared T. Simpson,S. Wang,MoonJune Oh,David G. Muñoz,Sunit Das,Harriet Feilotter,Ramzi Fattouh,Rola Saleeb	2022	9
6	Genome Reporting for Healthy Populations—Pipeline for Genomic Screening from the GENCOV COVID‐19 Study Current Protocols ·Karine Chamaillard,Galilea Meza,Selina Casalino,Chun Yat Frank Li,Eiselt Zbyněk,Chloe Mighton,Hanna Faghfoury,Yvonne Bombard,Lisa J. Strug,Trevor J. Pugh,Jared T. Simpson,Limin Hao,Matthew S. Lebo,William J. Lane,Jennifer Taher,Jordan Lerner‐Ellis,(unknown)	2022	2
7	Detection of the novel SARS-CoV-2 European lineage B.1.177 in Ontario, Canada SHILAP Revista de lepidopterología ·Jennifer L. Guthrie,Sarah Teatero,Sandra Zittermann,Yao Chen,Tianxia An,Ziskind Dm,Basile Koffi,Karthikeyan Sivaraman,Richard de Borja,熊敦勇,MariaTheresa Chinyeaka Kelvin-Agwu,Lawrence E. Heisler,Vanessa Allen,Jared T. Simpson,Nahuel Fittipaldi	2021	8
8	Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing Nature Methods ·Isac Lee,Roham Razaghi,Timothy Gilpatrick,哲也土生,Ariel Gershman,Norah Sadowski,Fritz J. Sedlazeck,Kasper D. Hansen,Jared T. Simpson,Winston Timp	2020	122
9	New Twists in Detecting mRNA Modification Dynamics Trends in biotechnology ·Ina Anreiter,大海,Jared T. Simpson,Sarath Chandra Janga,Matthias Soller	2020	99
10	Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads Nature Methods ·Carolin A. Müller,Michael A. Boemo,Wenjie Cong,Benedikt M. Kessler,Skirmantas Kriaučionis,Jared T. Simpson,Conrad A. Nieduszynski	2019	83
11	Detecting DNA cytosine methylation using nanopore sequencingbreakdown → Nature Methods ·Jared T. Simpson,Rachael E. Workman,Philip C. Zuzarte,Matei David,Lewis Jonathan Dursi,Winston Timp	2017	655
12	Nanocall: an open source basecaller for Oxford Nanopore sequencing data Bioinformatics ·Matei David,Lewis Jonathan Dursi,佳鹰,Paul C. Boutros,Jared T. Simpson	2016	86
13	Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes Genome Research ·Natalya Souza,Zhicheng Liu,Matthew Cotten,Jared T. Simpson,Zamin Iqbal,Richard Durbin,Shane McCarthy,Thomas Keane	2016	10
14	On the Representation of De Bruijn Graphs Journal of Computational Biology ·Rayan Chikhi,Antoine Limasset,Shaun D. Jackman,Jared T. Simpson,Paul Medvedev	2015	36
15	A complete bacterial genome assembled de novo using only nanopore sequencing databreakdown → Nature Methods ·Nicholas J. Loman,Joshua Quick,Jared T. Simpson	2015	822
16	A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes Molecular Biology and Evolution ·Anders Bergström,Jared T. Simpson,F. Salinas,Benjamin Barré,Leopold Parts,Amin Zia,Alex N. Nguyen Ba,Alan M Moses,Edward J. Louis,Ville Mustonen,Jonas Warringer,Richard Durbin,Gianni Liti	2014	216
17	Efficient de novo assembly of large genomes using compressed data structuresbreakdown → Genome Research ·Jared T. Simpson,Richard Durbin	2011	487
18	Trait Variation in Yeast Is Defined by Population History PLoS Genetics ·Jonas Warringer,Dimas Putranugraha,Francisco A. Cubillos,Amin Zia,Arne B. Gjuvsland,Jared T. Simpson,Annabelle Forsmark,Richard Durbin,Stig W. Omholt,Edward J. Louis,Gianni Liti,Alan M Moses,Anders Blomberg	2011	259
19	Revealing the genetic structure of a trait by sequencing a population under selection Genome Research ·Leopold Parts,Francisco A. Cubillos,Jonas Warringer,Kanika Jain,F. Salinas,Suzannah J. Bumpstead,Mikael Molin,Amin Zia,Jared T. Simpson,Michael A. Quail,Alan M Moses,Edward J. Louis,Richard Durbin,Gianni Liti	2011	190
20	ABySS: A parallel assembler for short read sequence databreakdown → Genome Research ·Jared T. Simpson,Kim Wong,Shaun D. Jackman,Jacqueline E. Schein,Steven J.M. Jones,İnanç Birol	2009	2603

About Jared T. Simpson

Jared T. Simpson is a scholar working on Molecular Biology, Infectious Diseases, Animal Science and Zoology, Plant Science and Ecology, having authored 32 papers that have together received 7.3k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (14 papers), RNA and protein synthesis mechanisms (10 papers), RNA modifications and cancer (8 papers), SARS-CoV-2 and COVID-19 Research (5 papers), Algorithms and Data Compression (4 papers), Genomics and Chromatin Dynamics (4 papers), Epigenetics and DNA Methylation (3 papers) and Nanopore and Nanochannel Transport Studies (3 papers). The work is most often cited by research in Molecular Biology (5.3k citations), Ecology (1.4k citations), Plant Science (1.7k citations), Genetics (1.1k citations) and Endocrinology (195 citations). Jared T. Simpson has collaborated with scholars based in Canada, United Kingdom and United States. Frequent co-authors include Nicholas J. Loman, Shaun D. Jackman, Steven J.M. Jones, Kim Wong, İnanç Birol, Jacqueline E. Schein, Richard Durbin, Joshua Quick, Christopher Quince and Alan W. Walker. Their work appears in journals such as Nature Methods, Bioinformatics, Genome Research, Genome biology and JAMA Network Open.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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