Alicia Oshlack

33.4k total citations · 9 hit papers
98 papers, 18.8k citations indexed

About

Alicia Oshlack is a scholar working on Molecular Biology, Genetics and Cancer Research. According to data from OpenAlex, Alicia Oshlack has authored 98 papers receiving a total of 18.8k indexed citations (citations by other indexed papers that have themselves been cited), including 79 papers in Molecular Biology, 20 papers in Genetics and 19 papers in Cancer Research. Recurrent topics in Alicia Oshlack's work include Genomics and Phylogenetic Studies (17 papers), Epigenetics and DNA Methylation (17 papers) and RNA modifications and cancer (16 papers). Alicia Oshlack is often cited by papers focused on Genomics and Phylogenetic Studies (17 papers), Epigenetics and DNA Methylation (17 papers) and RNA modifications and cancer (16 papers). Alicia Oshlack collaborates with scholars based in Australia, United States and United Kingdom. Alicia Oshlack's co-authors include Mark D. Robinson, Gordon K. Smyth, Matthew D. Young, Matthew J. Wakefield, Luke Zappia, Belinda Phipson, Jovana Maksimovic, N. Davidson, Lavinia Gordon and Yoav Gilad and has published in prestigious journals such as Nature, Nucleic Acids Research and Nature Communications.

In The Last Decade

Alicia Oshlack

96 papers receiving 18.6k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Gene ontology analysis for RNA-seq: accounting for selection bias

2010 5.3k citations Alicia Oshlack et al. Genome biology profile →
A scaling normalization method for differential expression analysis of RNA-seq data

2010 5.1k citations Mark D. Robinson, Alicia Oshlack Genome biology profile →
A comparison of background correction methods for two-colour microarrays

2007 735 citations Alicia Oshlack et al. Bioinformatics profile →
SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips

2012 575 citations Jovana Maksimovic, Alicia Oshlack et al. Genome biology profile →
Splatter: simulation of single-cell RNA sequencing data

2017 511 citations Luke Zappia, Belinda Phipson et al. Genome biology profile →
Corset: enabling differential gene expression analysis for de novoassembled transcriptomes

2014 509 citations N. Davidson, Alicia Oshlack Genome biology profile →
From RNA-seq reads to differential expression results

2010 500 citations Alicia Oshlack, Mark D. Robinson et al. profile →
missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform

2015 469 citations Belinda Phipson, Jovana Maksimovic et al. Bioinformatics profile →
Clustering trees: a visualization for evaluating clusterings at multiple resolutions

2018 432 citations Luke Zappia, Alicia Oshlack GigaScience profile →

Peers

Countries citing papers authored by Alicia Oshlack

Since Specialization

Citations

This map shows the geographic impact of Alicia Oshlack's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Alicia Oshlack with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Alicia Oshlack more than expected).

Fields of papers citing papers by Alicia Oshlack

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Alicia Oshlack. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Alicia Oshlack. The network helps show where Alicia Oshlack may publish in the future.

Co-authorship network of co-authors of Alicia Oshlack

This figure shows the co-authorship network connecting the top 25 collaborators of Alicia Oshlack. A scholar is included among the top collaborators of Alicia Oshlack based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Alicia Oshlack. Alicia Oshlack is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Damsel: analysis and visualisation of DamID sequencing in R 2024 ·Bioinformatics ·(unknown), Andrew Lonsdale, (unknown), Jan Schröder, Kieran F. Harvey, Alicia Oshlack	0
2	Cross-tissue, age-specific flow cytometry reference for immune cells in airway and blood of children 2024 ·Journal of Allergy and Clinical Immunology ·Shivanthan Shanthikumar, (unknown), (unknown), (unknown), (unknown), Jovana Maksimovic, Alicia Oshlack, Richard Saffery, (unknown), Sarath Ranganathan, Melanie R. Neeland	0
3	propeller: testing for differences in cell type proportions in single cell data 2022 ·Bioinformatics ·Belinda Phipson, Choon Boon Sim, Enzo R. Porrello, Alex W. Hewitt, Joseph E. Powell, Alicia Oshlack	104
4	ALLSorts: an RNA-Seq subtype classifier for B-cell acute lymphoblastic leukemia 2022 ·Blood Advances ·(unknown), Lauren M. Brown, Georgina L. Ryland, Andrew Lonsdale, (unknown), Louise Ludlow, Ian J. Majewski, Piers Blombery, Paul G. Ekert, N. Davidson, Alicia Oshlack	27
5	splatPop: simulating population scale single-cell RNA sequencing data 2021 ·Genome biology ·Christina B. Azodi, Luke Zappia, Alicia Oshlack, Davis J. McCarthy	13
6	Detecting copy number alterations in RNA-Seq using SuperFreq 2021 ·Bioinformatics ·Christoffer Flensburg, Alicia Oshlack, Ian J. Majewski	9
7	The application of RNA sequencing for the diagnosis and genomic classification of pediatric acute lymphoblastic leukemia 2020 ·Blood Advances ·Lauren M. Brown, Andrew Lonsdale, (unknown), N. Davidson, (unknown), (unknown), (unknown), (unknown), Françoise Méchinaud, Seong Lin Khaw, Ray C. Bartolo, Louise Ludlow, (unknown), Ian Brooks, Vida Petrovic, Nicola C. Venn, Rosemary Sutton, Ian J. Majewski, Alicia Oshlack, Paul G. Ekert	53
8	SuperFreq: Integrated mutation detection and clonal tracking in cancer 2020 ·PLoS Computational Biology ·Christoffer Flensburg, Tobias Sargeant, Alicia Oshlack, Ian J. Majewski	23
9	Bazam: a rapid method for read extraction and realignment of high-throughput sequencing data 2019 ·Genome biology ·Simon Sadedin, Alicia Oshlack	14
10	Direct reprogramming to human nephron progenitor-like cells using inducible piggyBac transposon expression of SNAI2-EYA1-SIX1 2019 ·Kidney International ·Jessica M. Vanslambrouck, Lauren E. Woodard, (unknown), (unknown), Sara E. Howden, Sean B. Wilson, Andrew Lonsdale, Pei Xuan Er, Joan Li, Jovana Maksimovic, Alicia Oshlack, Matthew H. Wilson, Melissa H. Little	20
11	Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis 2018 ·GigaScience ·N. Davidson, Alicia Oshlack	7
12	Clinker: visualizing fusion genes detected in RNA-seq data 2018 ·GigaScience ·(unknown), N. Davidson, (unknown), Ray C. Bartolo, Ian J. Majewski, Paul G. Ekert, Alicia Oshlack	14
13	Ximmer: a system for improving accuracy and consistency of CNV calling from exome data 2018 ·GigaScience ·Simon Sadedin, Justine A. Ellis, Seth L. Masters, Alicia Oshlack	19
14	Clustering trees: a visualization for evaluating clusterings at multiple resolutions breakdown → 2018 ·GigaScience ·Luke Zappia, Alicia Oshlack	432
15	A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data 2017 ·European Journal of Human Genetics ·(unknown), Zornitza Stark, Harriet Dashnow, Sebastian Lunke, Tiong Yang Tan, Alison Yeung, Simon Sadedin, Natalie Thorne, Ivan Macciocca, Clara Gaff, Alicia Oshlack, Susan M. White, Paul A. James	13
16	Haploinsufficiency for the Six2 gene increases nephron progenitor proliferation promoting branching and nephron number 2017 ·Kidney International ·Alexander N. Combes, Sean B. Wilson, Belinda Phipson, (unknown), Adler Ju, Kynan T. Lawlor, Cristina Cebrián, Sarah L. Walton, Ian Smyth, Karen M. Moritz, Raphael Kopan, Alicia Oshlack, Melissa H. Little	22
17	Cpipe: a shared variant detection pipeline designed for diagnostic settings 2015 ·Genome Medicine ·Simon Sadedin, Harriet Dashnow, Paul A. James, Melanie Bahlo, Denis C. Bauer, Andrew Lonie, Sebastian Lunke, Ivan Macciocca, Jason P. Ross, Kirby Siemering, Zornitza Stark, Susan M. White, (unknown), Graham R. Taylor, Clara Gaff, Alicia Oshlack, Natalie Thorne	54
18	Purification and Transcriptomic Analysis of Mouse Fetal Leydig Cells Reveals Candidate Genes for Specification of Gonadal Steroidogenic Cells1 2015 ·Biology of Reproduction ·(unknown), Katrina M. Bell, (unknown), Vincent R. Harley, Andrew Sinclair, Alicia Oshlack, Peter Koopman, Josephine Bowles	39
19	DiffVar: a new method for detecting differential variability with application to methylation in cancer and aging 2014 ·Genome biology ·Belinda Phipson, Alicia Oshlack	61
20	miRNA-Seq normalization comparisons need improvement 2013 ·RNA ·Xiaobei Zhou, Alicia Oshlack, Mark D. Robinson	20

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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