Anton Valouev

5.7k citations

25 papers · 3.0k indexed · 1 hit paper · h-index 20

Impact in

Molecular Biology top 2%
- Genomics and Chromatin Dynamics
- Epigenetics and DNA Methylation
- RNA modifications and cancer
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- RNA Research and Splicing
- CRISPR and Genetic Engineering
Cancer Research top 5%

Papers in ⓘ

Molecular Biology 17
- Genomics and Phylogenetic Studies 5
- Renal and related cancers 5
- Genomics and Chromatin Dynamics 5
- CRISPR and Genetic Engineering 4
- RNA and protein synthesis mechanisms 4
- Epigenetics and DNA Methylation 3
Plant Science 6
- Chromosomal and Genetic Variations 5

Co-authors: Arend Sidow (6 shared papers)Andrew Fire (3 shared papers)Steven Johnson (2 shared papers)Tomek Swigut (2 shared papers)Joanna Wysocka (2 shared papers)David S. Johnson (2 shared papers)Elizabeth D. Anton (2 shared papers)R Myers (2 shared papers)
Journals: Journal of Clinical Oncology (4 papers)Genome Research (4 papers)PLoS Genetics (2 papers)Journal of Computational Biology (2 papers)Proceedings of the National Academy of Sciences (2 papers)
Partner nations: United States United Kingdom China

In The Last Decade

Anton Valouev

25 papers receiving 2.9k citations

Hit Papers

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data 2008 · 532 citations

Peers

Countries citing papers authored by Anton Valouev

Since Specialization

Citations

This map shows the geographic impact of Anton Valouev's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Anton Valouev with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Anton Valouev more than expected).

Fields of papers citing papers by Anton Valouev

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Anton Valouev. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Anton Valouev. The network helps show where Anton Valouev may publish in the future.

Co-authors

The 25 scholars most cited alongside Anton Valouev, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Anton Valouev Line = papers co-authored together Anton Valouev links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 25 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data Nature Methods ·Anton Valouev, David S. Johnson, Andreas Sundquist, Catherine Medina, Elizabeth D. Anton, Serafim Batzoglou, R Myers, Arend Sidow Hit paper breakdown →	2008	532
2	Determinants of nucleosome organization in primary human cells Nature ·Anton Valouev, Steven Johnson, Scott D. Boyd, Cheryl L. Smith, Andrew Fire, Arend Sidow	2011	482
3	Jarid2/Jumonji Coordinates Control of PRC2 Enzymatic Activity and Target Gene Occupancy in Pluripotent Cells Cell ·Jamy C. Peng, Anton Valouev, Tomek Swigut, Junmei Zhang, Yingming Zhao, Arend Sidow, Joanna Wysocka	2009	426
4	A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning Genome Research ·Anton Valouev, Jeffrey K. Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather E. Peckham, Kathy Zeng, Joel A. Malek, Gina L. Costa, Kevin McKernan, Arend Sidow, Andrew Fire, Steven Johnson	2008	413
5	Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver Genome Research ·Alayne Brunner, David S. Johnson, Si Wan Kim, Anton Valouev, Timothy E. Reddy, Norma Neff, Elizabeth D. Anton, Catherine Medina, Loan Nguyen, Eric Chiao, Chuba Oyolu, Gary P. Schroth, Devin Absher, Julie C. Baker, R Myers	2009	217
6	Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates Nature Structural & Molecular Biology ·Ziyang Ma, Tomek Swigut, Anton Valouev, Álvaro Rada-Iglesias, Joanna Wysocka	2010	165
7	High-resolution human genome structure by single-molecule analysis Proceedings of the National Academy of Sciences ·Brian Teague, Michael S. Waterman, Steven Goldstein, Konstantinos Potamousis, Shiguo Zhou, Susan Reslewic, Deepayan Sarkar, Anton Valouev, Christopher Churas, Jeffrey M. Kidd, Scott R. Kohn, Rodney Runnheim, Casey Lamers, Dan Forrest, Michael A. Newton, Evan E. Eichler, Marijo Kent‐First, Urvashi Surti, Miron Livny, David C. Schwartz	2010	126
8	Differential regulation of mouse and human nephron progenitors by the Six family of transcriptional regulators Development ·Lori L. O’Brien, Qiuyu Guo, Youngjin Lee, Tracy Tran, Jean-Denis Bénazet, Peter H. Whitney, Anton Valouev, Andrew P. McMahon	2016	92
9	An algorithm for assembly of ordered restriction maps from single DNA molecules Proceedings of the National Academy of Sciences ·Anton Valouev, David C. Schwartz, Shiguo Zhou, Michael S. Waterman	2006	68
10	Alignment of Optical Maps Journal of Computational Biology ·Anton Valouev, Lei Li, Yu‐Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman	2006	53
11	Reconstructing genetic history of Siberian and Northeastern European populations Genome Research ·Emily H.M. Wong, Andrey Khrunin, Larissa Nichols, Dmitry Pushkarev, D. V. Khokhrin, Dmitry A. Verbenko, Oleg V. Evgrafov, James A. Knowles, John Novembre, Limborskaia Sa, Anton Valouev	2016	49
12	Copy Number Variation Is a Fundamental Aspect of the Placental Genome PLoS Genetics ·Roberta L. Hannibal, Edward B. Chuong, Juan Carlos Rivera‐Mulia, David M. Gilbert, Anton Valouev, Julie C. Baker	2014	46
13	Piwi maintains germline stem cells and oogenesis in Drosophila through negative regulation of Polycomb group proteins Nature Genetics ·Jamy C. Peng, Anton Valouev, Na Liu, Haifan Lin	2016	40
14	Development of a comprehensive cell-free DNA (cfDNA) assay for early detection of multiple tumor types: The Circulating Cell-free Genome Atlas (CCGA) study. Journal of Clinical Oncology ·Eric A. Klein, Earl Hubbell, Tara Maddala, Alex Aravanis, John F. Beausang, Darya Filippova, Samuel Gross, Arash Jamshidi, Kathryn N. Kurtzman, Ling Shen, Anton Valouev, Oliver Venn, Nan Zhang, David A. Smith, Timothy J. Yeatman, Robert Tibshirani, Richard T. Williams, Anne‐Renee Hartman, Michael V. Seiden, Minetta C. Liu	2018	38
15	Prevalence of clonal hematopoiesis of indeterminate potential (CHIP) measured by an ultra-sensitive sequencing assay: Exploratory analysis of the Circulating Cancer Genome Atlas (CCGA) study. Journal of Clinical Oncology ·Charles Swanton, Oliver Venn, Alex Aravanis, Earl Hubbell, Tara Maddala, John F. Beausang, Darya Filippova, Samuel Gross, Arash Jamshidi, Ling Shen, Anton Valouev, Nan Zhang, Kelly L. Bolton, Timothy J. Yeatman, Michael V. Seiden, Geoffrey R. Oxnard, Minetta C. Liu, Richard T. Williams, Anne‐Renee Hartman, José Baselga	2018	35
16	Transcriptional regulatory control of mammalian nephron progenitors revealed by multi-factor cistromic analysis and genetic studies PLoS Genetics ·Lori L. O’Brien, Qiuyu Guo, Emad Bahrami‐Samani, Joo‐Seop Park, Sean M. Hasso, Young‐Jin Lee, Alan Fang, Albert D. Kim, Jinjin Guo, Trudy M. Hong, Kevin A. Peterson, Scott Lozanoff, Ramya Raviram, Bing Ren, Ben Fogelgren, Andrew D. Smith, Anton Valouev, Andrew P. McMahon	2018	32
17	Discovery of recurrent structural variants in nasopharyngeal carcinoma Genome Research ·Anton Valouev, Ziming Weng, Robert T. Sweeney, Sushama Varma, Quynh‐Thu Le, Christina S. Kong, Arend Sidow, Robert B. West	2013	30
18	Refinement of optical map assemblies Bioinformatics ·Anton Valouev, Yu Zhang, David C. Schwartz, Michael S. Waterman	2006	23
19	An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo Epigenetics & Chromatin ·Lia E Gracey, Zhiying Chen, Jay M. Maniar, Anton Valouev, Arend Sidow, Mark A. Kay, Andrew Fire	2010	21
20	Breast cancer cell-free DNA (cfDNA) profiles reflect underlying tumor biology: The Circulating Cell-Free Genome Atlas (CCGA) study. Journal of Clinical Oncology ·Minetta C. Liu, Tara Maddala, Alex Aravanis, Earl Hubbell, John F. Beausang, Darya Filippova, Samuel Gross, Arash Jamshidi, Kathryn N. Kurtzman, Ling Shen, Anton Valouev, Oliver Venn, Nan Zhang, David A. Smith, Fergus J. Couch, Christina Curtis, Richard T. Williams, Eric A. Klein, Anne‐Renee Hartman, José Baselga	2018	20

About Anton Valouev

Anton Valouev is a scholar working on Molecular Biology, Plant Science, Cancer Research, Pulmonary and Respiratory Medicine and Genetics, having authored 25 papers that have together received 3.0k indexed citations. Recurring topics across this work include Cancer Genomics and Diagnostics (6 papers), Genomics and Phylogenetic Studies (5 papers), Renal and related cancers (5 papers), Genomics and Chromatin Dynamics (5 papers), Chromosomal and Genetic Variations (5 papers), CRISPR and Genetic Engineering (4 papers), RNA and protein synthesis mechanisms (4 papers) and Epigenetics and DNA Methylation (3 papers). The work is most often cited by research in Molecular Biology (2.6k citations), Cancer Research (375 citations), Genetics (500 citations), Aging (26 citations) and Plant Science (429 citations). Anton Valouev has collaborated with scholars based in United States, United Kingdom and China. Frequent co-authors include Arend Sidow, Andrew Fire, Steven Johnson, Tomek Swigut, Joanna Wysocka, David S. Johnson, Elizabeth D. Anton, R Myers, Cheryl L. Smith and Scott D. Boyd. Their work appears in journals such as Journal of Clinical Oncology, Genome Research, PLoS Genetics, Journal of Computational Biology and Proceedings of the National Academy of Sciences.

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