Andra Waagmeester

21.5k citations

30 papers · 1.2k indexed · 1 hit paper · h-index 13

Impact in

Molecular Biology top 10%
- Bioinformatics and Genomic Networks
- Biomedical Text Mining and Ontologies
- Gene expression and cancer classification
- Microbial Metabolic Engineering and Bioproduction
- Metabolomics and Mass Spectrometry Studies
- Genomics and Phylogenetic Studies
Computational Theory and Mathematics top 5%
- Computational Drug Discovery Methods

Papers in

Communication 5
- Wikis in Education and Collaboration 5
Molecular Biology 28
- Biomedical Text Mining and Ontologies 18
- Bioinformatics and Genomic Networks 13
- Genomics and Phylogenetic Studies 10

Co-authors: Chris T. Evelo Egon Willighagen Alexander R. Pico Susan L. Coort Martina Kutmon Ryan A. Miller Anders Riutta Kristina Hanspers
Journals: Database (4 papers)Nucleic Acids Research (3 papers)PLoS Computational Biology (2 papers)PLoS ONE (2 papers)Semantic Web (2 papers)
Partner nations: Netherlands United States United Kingdom

In The Last Decade

Andra Waagmeester

30 papers receiving 1.2k citations

Hit Papers

align trajectories log scale

WikiPathways: connecting communities 2020 · 507 citations

Peers

Countries citing papers authored by Andra Waagmeester

Since Specialization

Citations

This map shows the geographic impact of Andra Waagmeester's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Andra Waagmeester with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Andra Waagmeester more than expected).

Fields of papers citing papers by Andra Waagmeester

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Andra Waagmeester. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Andra Waagmeester. The network helps show where Andra Waagmeester may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Andra Waagmeester, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Andra Waagmeester Line = papers co-authored together Andra Waagmeester links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Wikidata subsetting: Approaches, tools, and evaluation Semantic Web ·H. Hellmer, José Emilio Labra Gayo, Andra Waagmeester, Ammar Ammar, Carolina González, Denise Slenter, Sabah Ul-Hasan, Egon Willighagen, Fiona McNeill, Alasdair J. G. Gray	2023	2
2	Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions PLoS ONE ·Ryan A. Miller, Martina Kutmon, Anwesha Bohler, Andra Waagmeester, Chris T. Evelo, Egon Willighagen	2022	2
3	A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses BMC Biology ·Andra Waagmeester, Egon Willighagen, Andrew I. Su, Martina Kutmon, José Emilio Labra Gayo, Bayaras, Quentin Groom, Peter J. Schaap, А.М. Чвалюк, Jasper J. Koehorst	2021	12
4	Complex Portal 2022: new curation frontiers Nucleic Acids Research ·Birgit Meldal, Livia Perfetto, Colin Combe, Tiago Lubiana, B. Linder, Hema Bye‐A‐Jee, Andra Waagmeester, Noemí del‐Toro, Anjali Shrivastava, Rodney A. Little, Edith D. Wong, Bernhard Mlecnik, Gabriela Bindea, Kalpana Panneerselvam, Egon Willighagen, Juri Rappsilber, Pablo Porras, Henning Hermjakob, Sandra Orchard	2021	37
5	WikiPathways: connecting communities Nucleic Acids Research ·Marvin Martens, Ammar Ammar, Anders Riutta, Andra Waagmeester, Denise Slenter, Kristina Hanspers, Ryan A. Miller, Daniela Digles, Élisson Nogueira Lopes, Friederike Ehrhart, Lauren J. Dupuis, Laurent Winckers, Susan L. Coort, Egon Willighagen, Chris T. Evelo, Alexander R. Pico, Martina Kutmon Hit paper breakdown →	2020	507
6	Using Crowd-curation to Improve Taxon Annotations on the Wikimedia Infrastructure Biodiversity Information Science and Standards ·Andra Waagmeester, Daniel Mietchen, Judith Masur, Quentin Groom	2019	3
7	Wikidata as an intuitive resource towards semantic data modeling in data FAIRification Figshare ·Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Gregory S. Stupp, Lynn M. Schriml, Mark Thompson, Andrew I. Su, Marco Roos	2018	2
8	Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes Database ·Tim Putman, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Chunlei Wu, Andrew I. Su, Benjamin M. Good	2016	5
9	Linking Wikidata to the Rest of the Semantic Web. Research Publications (Maastricht University) ·Andra Waagmeester, Egon Willighagen, Núria Queralt-Rosiñach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim Putman, Z. Malecki, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good	2016	1
10	Wikidata as a semantic framework for the Gene Wiki initiative Database ·Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Z. Malecki, Tim Putman, Peizhe Jia, Jennifer Masella Blackman, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su	2016	31
11	Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources PLoS Computational Biology ·Andra Waagmeester, Martina Kutmon, Anders Riutta, Ryan A. Miller, Egon Willighagen, Chris T. Evelo, Alexander R. Pico	2016	18
12	WikiPathways: capturing the full diversity of pathway knowledge Nucleic Acids Research ·Martina Kutmon, Anders Riutta, Nuno Nunes, Kristina Hanspers, Egon Willighagen, Anwesha Bohler, Jonathan Mélius, Andra Waagmeester, Shengjuan Zhang, Ryan A. Miller, Susan L. Coort, Elisa Cirillo, 정연섭, Chris T. Evelo, Alexander R. Pico	2015	296
13	Applying linked data approaches to pharmacology: Architectural decisions and implementation Semantic Web ·Alasdair J. G. Gray, Paul Groth, Antonis Loizou, P. Rama Rao, Christian Brenninkmeijer, Kees Burger, Christine Chichester, Chris T. Evelo, Carole Goble, Lee Harland, Steve Pettifer, Mark Thompson, Andra Waagmeester, Antony Williams	2014	36
14	The Application of the Open Pharmacological Concepts Triple Store (Open PHACTS) to Support Drug Discovery Research PLoS ONE ·Joseline Ratnam, Barbara Zdrazil, Daniela Digles, Mirjana Begonja Tumpić, Jean‐Marc Neefs, Hannah Tipney, Ronald Siebes, Andra Waagmeester, Glyn Bradley, Belkacem Addoum, Lars Richter, José Brea, Chris T. Evelo, Edgar Jacoby, Stefan Senger, Marı́a Isabel Loza, Gerhard F. Ecker, Christine Chichester	2014	23
15	The ChEMBL database as linked open data Journal of Cheminformatics ·Egon Willighagen, Andra Waagmeester, Ola Spjuth, Peter Ansell, Antony Williams, Valery Tkachenko, Janna Hastings, Bin Chen, David Wild	2013	78
16	SemScape: Visualizating Semantic Web Data Landscapes with Cytoscape 3.0. Andrea Splendiani, Andra Waagmeester, Jiaxi Zhu, Helena Deus	2012	1
17	Pathway Enrichment Based on Text Mining and Its Validation on Carotenoid and Vitamin A Metabolism OMICS A Journal of Integrative Biology ·Andra Waagmeester, Piotr Pęzik, Susan L. Coort, Franck Tourniaire, Chris T. Evelo, Dietrich Rebholz‐Schuhmann	2009	11
18	The public road to high-quality curated biological pathways Drug Discovery Today ·Michiel Adriaens, Magali Jaillard, Andra Waagmeester, Susan L. Coort, Alexander R. Pico, Chris T. Evelo	2008	42
19	The role of bioinformatics in pathway curation Genes & Nutrition ·Andra Waagmeester, Thomas Kelder, Chris T. Evelo	2008	10
20	Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis Trends in Microbiology ·Andra Waagmeester, Julie Thompson, Jean‐Marc Reyrat	2005	48

About Andra Waagmeester

Andra Waagmeester is a scholar working on Communication, Molecular Biology, Artificial Intelligence, Ecological Modeling and Computational Theory and Mathematics, having authored 30 papers that have together received 1.2k indexed citations. Recurring topics across this work include Biomedical Text Mining and Ontologies (18 papers), Bioinformatics and Genomic Networks (13 papers), Genomics and Phylogenetic Studies (10 papers), Semantic Web and Ontologies (9 papers), Wikis in Education and Collaboration (5 papers), Research Data Management Practices (4 papers), Computational Drug Discovery Methods (3 papers) and Natural Language Processing Techniques (3 papers). The work is most often cited by research in Molecular Biology (862 citations), Computational Theory and Mathematics (153 citations), Cancer Research (140 citations), Biological Psychiatry (17 citations) and Information Systems and Management (36 citations). Andra Waagmeester has collaborated with scholars based in Netherlands, United States and United Kingdom. Frequent co-authors include Chris T. Evelo, Egon Willighagen, Alexander R. Pico, Susan L. Coort, Martina Kutmon, Ryan A. Miller, Anders Riutta, Kristina Hanspers, Daniela Digles and Denise Slenter. Their work appears in journals such as Database, Nucleic Acids Research, PLoS Computational Biology, PLoS ONE and Semantic Web.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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