Paul Pavlidis

17.1k total citations · 1 hit paper
152 papers, 11.7k citations indexed

About

Paul Pavlidis is a scholar working on Molecular Biology, Genetics and Cognitive Neuroscience. According to data from OpenAlex, Paul Pavlidis has authored 152 papers receiving a total of 11.7k indexed citations (citations by other indexed papers that have themselves been cited), including 103 papers in Molecular Biology, 26 papers in Genetics and 19 papers in Cognitive Neuroscience. Recurrent topics in Paul Pavlidis's work include Bioinformatics and Genomic Networks (44 papers), Gene expression and cancer classification (35 papers) and Biomedical Text Mining and Ontologies (15 papers). Paul Pavlidis is often cited by papers focused on Bioinformatics and Genomic Networks (44 papers), Gene expression and cancer classification (35 papers) and Biomedical Text Mining and Ontologies (15 papers). Paul Pavlidis collaborates with scholars based in Canada, United States and United Kingdom. Paul Pavlidis's co-authors include William Stafford Noble, Jesse Gillis, Jie Qin, Homin K. Lee, Meeta Mistry, Amy K Hsu, Nikolaus Fortelny, Christopher M. Overall, Daniel V. Madison and Etienne Sibille and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

Paul Pavlidis

150 papers receiving 11.5k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Coexpression Analysis of Human Genes Across Many Microarray Data Sets

2004 583 citations Paul Pavlidis et al. Genome Research profile →

Peers

Countries citing papers authored by Paul Pavlidis

Since Specialization

Citations

This map shows the geographic impact of Paul Pavlidis's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Paul Pavlidis with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Paul Pavlidis more than expected).

Fields of papers citing papers by Paul Pavlidis

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Paul Pavlidis. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Paul Pavlidis. The network helps show where Paul Pavlidis may publish in the future.

Co-authorship network of co-authors of Paul Pavlidis

This figure shows the co-authorship network connecting the top 25 collaborators of Paul Pavlidis. A scholar is included among the top collaborators of Paul Pavlidis based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Paul Pavlidis. Paul Pavlidis is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Revealing function-altering MECP2 mutations in individuals with autism spectrum disorder using yeast and Drosophila 2025 ·Genetics ·(unknown), (unknown), Graeme H. McIntosh, Barry P. Young, Tianshun Lian, Jie Liu, (unknown), J. Liston, (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), Jesse T. Chao, Sanja Rogić, Paul Pavlidis, Douglas W. Allan, Christopher Loewen	0
2	The Canadian Open Neuroscience Platform—An open science framework for the neuroscience community 2023 ·PLoS Computational Biology ·Rachel Harding, Patrick Bermudez, Alexander Bernier, Michael J. S. Beauvais, Pierre Bellec, Sean Hill, Agâh Karakuzu, Bartha Maria Knoppers, Paul Pavlidis, Jean‐Baptiste Poline, Jane Roskams, Nikola Stikov, Jessica Stone, Stephen C. Strother, Alan C. Evans	4
3	Open science in play and in tension with patent protections 2023 ·Journal of Law and the Biosciences ·(unknown), (unknown), (unknown), Paul Pavlidis, Judy Illes	2
4	Curation of over 10 000 transcriptomic studies to enable data reuse 2021 ·Database ·Nathaniel C. Lim, (unknown), Manuel Belmadani, (unknown), B. Ogan Mancarci, Jordan Sicherman, Matthew Jacobson, (unknown), (unknown), Paul Pavlidis	22
5	Experiment level curation of transcriptional regulatory interactions in neurodevelopment 2021 ·PLoS Computational Biology ·(unknown), Alexander M. Morin, (unknown), (unknown), (unknown), (unknown), (unknown), Paul Pavlidis	2
6	Untangling the effects of cellular composition on coexpression analysis 2020 ·Genome Research ·(unknown), Paul Pavlidis	25
7	Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation 2019 ·Proceedings of the National Academy of Sciences ·Troy A. McDiarmid, Manuel Belmadani, (unknown), (unknown), Eleanor Mathews, Gregory P. Mullen, (unknown), (unknown), James B. Rand, Kota Mizumoto, Kurt Haas, Paul Pavlidis, Catharine H. Rankin	43
8	Monitoring changes in the Gene Ontology and their impact on genomic data analysis 2018 ·GigaScience ·Matthew Jacobson, Adriana E. Sedeño-Cortés, Paul Pavlidis	7
9	Cross-Laboratory Analysis of Brain Cell Type Transcriptomes with Applications to Interpretation of Bulk Tissue Data 2017 ·eNeuro ·B. Ogan Mancarci, Lilah Toker, Shreejoy J. Tripathy, Brenna Li, Brad R. Rocco, Etienne Sibille, Paul Pavlidis	90
10	Transcriptomic correlates of neuron electrophysiological diversity 2017 ·PLoS Computational Biology ·Shreejoy J. Tripathy, Lilah Toker, Brenna Li, (unknown), (unknown), B. Ogan Mancarci, Paul Pavlidis	35
11	EGAD: ultra-fast functional analysis of gene networks 2016 ·Bioinformatics ·Sara Ballouz, Melanie Weber, Paul Pavlidis, Jesse Gillis	54
12	Linking Wikidata to the Rest of the Semantic Web. 2016 ·Research Publications (Maastricht University) ·Andra Waagmeester, Egon Willighagen, Núria Queralt-Rosiñach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim Putman, (unknown), Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good	1
13	Understanding the impact of 1q21.1 copy number variant 2011 ·Orphanet Journal of Rare Diseases ·Chansonette Harvard, (unknown), Eloi Mercier, Rita Colnaghi, Diana Alcantara, Eva W. C. Chow, Sally Martell, Christine Tyson, Monica Hrynchak, Barbara McGillivray, Sara Hamilton, Sandra L. Marles, Aziz Mhanni, Angelika J. Dawson, Paul Pavlidis, Ying Qiao, J.J.A. Holden, M. E. Suzanne Lewis, Mark O’Driscoll, Evica Rajcan‐Separovic	43
14	Activation of MAPK pathways links LMNA mutations to cardiomyopathy in Emery-Dreifuss muscular dystrophy 2007 ·Journal of Clinical Investigation ·Antoine Muchir, Paul Pavlidis, V. Decostre, Alan J. Herron, Takuro Arimura, Gisèle Bonne, Howard J. Worman	243
15	Cross-Scale Mapping of Gene Expression to Neuroimaging Datasets via Semantic Decomposition 2007 ·Spiro P. Pantazatos, (unknown), Paul Pavlidis, John D. Van Horn, Yves A. Lussier	1
16	Akt1 deficiency affects neuronal morphology and predisposes to abnormalities in prefrontal cortex functioning 2006 ·Proceedings of the National Academy of Sciences ·Wen‐Sung Lai, Bin Xu, Koen G.C. Westphal, Marta Paterlini, Berend Olivier, Paul Pavlidis, Maria Karayiorgou, Joseph A. Gogos	121
17	An Ancestral Haplotype Defines Susceptibility to Doxorubicin Nephropathy in the Laboratory Mouse 2006 ·Journal of the American Society of Nephrology ·Zongyu Zheng, Paul Pavlidis, Streamson C. Chua, Vivette D. D’Agati, Ali G. Gharavi	37
18	Cutting Edge: STAT6 Serves as a Positive and Negative Regulator of Gene Expression in IL-4-Stimulated B Lymphocytes 2002 ·The Journal of Immunology ·Andreas Schröder, Paul Pavlidis, Akinori Arimura, (unknown), Paul B. Rothman	78
19	Analysis of strain and regional variation in gene expression in mouse brain 2001 ·Genome biology ·Paul Pavlidis, William Stafford Noble	257
20	Pair Recordings Reveal All-Silent Synaptic Connections and the Postsynaptic Expression of Long-Term Potentiation 2001 ·Neuron ·Johanna M. Montgomery, Paul Pavlidis, Daniel V. Madison	143

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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