Julie Thompson

163.4k citations

124 papers · 138.9k indexed · 8 hit papers · h-index 38

Molecular Biology top 0.01%
Plant Science top 0.01%
Ecology top 0.01%
Genetics top 0.01%
Ecology, Evolution, Behavior and Systematics top 0.01%

Co-authors: Toby J. Gibson Desmond G. Higgins Andreas Wilm Hamish McWilliam Rodrigo López Iain M. Wallace Paul McGettigan F. Valentin
Topics: Genomics and Phylogenetic Studies (60 papers)RNA and protein synthesis mechanisms (29 papers)Machine Learning in Bioinformatics (25 papers)
Cited by: Molecular Biology Ecology Plant Science
Journals: Nucleic Acids Research CirculationSHILAP Revista de lepidopterología
Partner nations: France Germany United States

In The Last Decade

Julie Thompson

120 papers receiving 134.9k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1994 56.8k citations Julie Thompson, Desmond G. Higgins et al. Nucleic Acids Research profile →
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1997 35.7k citations Julie Thompson Nucleic Acids Research profile →
Clustal W and Clustal X version 2.0

2007 23.8k citations Gordon Blackshields, Nigel P. Brown et al. Bioinformatics profile →
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

2011 11.2k citations Andreas Wilm, Toby J. Gibson et al. profile →
Multiple sequence alignment with Clustal X

1998 2.4k citations Julie Thompson, Desmond G. Higgins et al. profile →
Multiple Sequence Alignment Using ClustalW and ClustalX

2002 2.3k citations Julie Thompson, Toby J. Gibson et al. profile →
[22] Using CLUSTAL for multiple sequence alignments

1996 1.4k citations Desmond G. Higgins, Julie Thompson et al. profile →
A comprehensive comparison of multiple sequence alignment programs

1999 554 citations Julie Thompson, Frédéric Plewniak et al. Nucleic Acids Research profile →

Peers

Countries citing papers authored by Julie Thompson

Since Specialization

Citations

This map shows the geographic impact of Julie Thompson's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Julie Thompson with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Julie Thompson more than expected).

Fields of papers citing papers by Julie Thompson

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Julie Thompson. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Julie Thompson. The network helps show where Julie Thompson may publish in the future.

Co-authorship network of co-authors of Julie Thompson

This figure shows the co-authorship network connecting the top 25 collaborators of Julie Thompson. A scholar is included among the top collaborators of Julie Thompson based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Julie Thompson. Julie Thompson is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	Graph-based machine learning model for weight prediction in protein–protein networks 2024 ·BMC Bioinformatics ·(unknown),Kirsley Chennen,(unknown),Julie Thompson,Mounir Ben Ayed,Nicolas Lachiche	1
2	CeGAL: Redefining a Widespread Fungal-Specific Transcription Factor Family Using an In Silico Error-Tracking Approach 2023 ·Journal of Fungi ·Claudine Mayer,(unknown),(unknown),(unknown),Kirsley Chennen,Olivier Poch,Julie Thompson	4
3	Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events 2023 ·SHILAP Revista de lepidopterología ·Arnaud Kress,Olivier Poch,Odile Lecompte,Julie Thompson	8
4	De-MISTED: Image-based classification of erroneous multiple sequence alignments using convolutional neural networks 2023 ·Applied Intelligence ·(unknown),Pierre Collet,Julie Thompson,(unknown)	1
5	Multi-omics comparisons of different forms of centronuclear myopathies and the effects of several therapeutic strategies 2021 ·Molecular Therapy ·(unknown),David J. Reiss,(unknown),(unknown),(unknown),(unknown),(unknown),(unknown),Christine Kretz,Wolfgang Raffelsberger,Céline Keime,O.M. Dorchies,Julie Thompson,Jocelyn Laporte	13
6	Environmental Justice and the Mississippi Poultry Farming Industry 2021 ·Environmental Justice ·(unknown),Jonathan Hall,(unknown),(unknown),(unknown),Daniel Polsky,Rianna Murray,(unknown),Julie Thompson,Sacoby Wilson	1
7	MISTIC: A prediction tool to reveal disease-relevant deleterious missense variants 2020 ·PLoS ONE ·Kirsley Chennen,(unknown),Xavière Lornage,Arnaud Kress,Johann Böhm,Julie Thompson,Jocelyn Laporte,Olivier Poch	23
8	Circular code motifs in the ribosome: a missing link in the evolution of translation? 2019 ·RNA ·(unknown),Raymond Ripp,Claudine Mayer,Olivier Poch,Christian Michel,Julie Thompson	29
9	MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers 2017 ·Journal of Medical Internet Research ·Alexis Allot,Kirsley Chennen,Yannis Nevers,Laetitia Poidevin,Arnaud Kress,Raymond Ripp,Julie Thompson,Olivier Poch,Odile Lecompte	5
10	HSPB8 haploinsufficiency causes dominant adult-onset axial and distal myopathy 2017 ·Acta Neuropathologica ·(unknown),Xavière Lornage,Béatrice Lannes,Raphaël Schneider,Guillaume Bierry,Nicolas Dondaine,Anne Boland,Jean‐François Deleuze,Johann Böhm,Julie Thompson,Jocelyn Laporte,Valérie Biancalana	24
11	Impact of an early education multimedia intervention in managing nutrition-related chemotherapy side effects: a pilot study 2013 ·SpringerPlus ·Julie Thompson,Kathryn Silliman,Dawn Clifford	9
12	Abstract 9309: Daily Respiratory Rate Trends are Significantly Elevated Prior to HF Admissions 2012 ·Circulation ·Stephan Goetze,Pier D. Lambiase,Richard J. Schilling,Hans‐Joachim Trappe,Siegmund Winter,Yi Zhang,Nicholas Wold,Ljubomir Manola,(unknown),Julie Thompson,(unknown)	1
13	Functional insights into the core-TFIIH from a comparative survey 2012 ·Genomics ·(unknown),Benjamin Linard,Xavier Brochet,Raymond Ripp,Julie Thompson,Dino Moras,Odile Lecompte,Olivier Poch	14
14	Issues in bioinformatics benchmarking: the case study of multiple sequence alignment 2010 ·Nucleic Acids Research ·(unknown),Olivier Poch,Julie Thompson	49
15	Functional Proteomics 2008 ·Methods in molecular biology ·Julie Thompson,Christine Schaeffer‐Reiss,Marius Ueffing	13
16	Clustal W and Clustal X version 2.0breakdown → 2007 ·Bioinformatics ·(unknown),Gordon Blackshields,Nigel P. Brown,Chenna Ramu,Paul McGettigan,Hamish McWilliam,F. Valentin,Iain M. Wallace,Andreas Wilm,Rodrigo López,Julie Thompson,Toby J. Gibson,Desmond G. Higgins	23845
17	MACSIMS : multiple alignment of complete sequences information management system 2006 ·BMC Bioinformatics ·Julie Thompson,Arnaud Muller,Andrew Waterhouse,James B Procter,Geoffrey J. Barton,Frédéric Plewniak,Olivier Poch	37
18	GOAnno: GO annotation based on multiple alignment 2005 ·Computer applications in the biosciences ·Frédéric Chalmel,Aurélie Lardenois,Julie Thompson,Jean Muller,José‐Alain Sahel,Thierry Léveillard,Olivier Poch	26
19	A comprehensive comparison of multiple sequence alignment programsbreakdown → 1999 ·Nucleic Acids Research ·Julie Thompson,Frédéric Plewniak,Olivier Poch	554
20	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choicebreakdown → 1994 ·Nucleic Acids Research ·Julie Thompson,Desmond G. Higgins,Toby J. Gibson	56835

About Julie Thompson

Julie Thompson is a scholar working on Medical Terminology, Gastroenterology and Molecular Biology, having authored 124 papers that have together received 138.9k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (60 papers), RNA and protein synthesis mechanisms (29 papers) and Machine Learning in Bioinformatics (25 papers). The work is most often cited by research in Molecular Biology (74.2k citations), Ecology (23.6k citations) and Plant Science (34.3k citations). Julie Thompson has collaborated with scholars based in France, Germany and United States. Frequent co-authors include Toby J. Gibson, Desmond G. Higgins, Andreas Wilm, Hamish McWilliam, Rodrigo López, Iain M. Wallace, Paul McGettigan, F. Valentin, Nigel P. Brown and Chenna Ramu. Their work appears in journals such as Nucleic Acids Research, Circulation and SHILAP Revista de lepidopterología.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact