Vineet Bafna

59.3k citations

199 papers · 10.4k indexed · 2 hit papers · h-index 54

Impact in

Spectroscopy top 0.2%
- Advanced Proteomics Techniques and Applications
- Mass Spectrometry Techniques and Applications
Molecular Biology top 0.5%
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- Metabolomics and Mass Spectrometry Studies
- Epigenetics and DNA Methylation
- RNA modifications and cancer

Papers in

Genetics 65
- Genomic variations and chromosomal abnormalities 24
Molecular Biology 141
- Genomics and Phylogenetic Studies 62
- Gene expression and cancer classification 20
- RNA and protein synthesis mechanisms 19
- RNA modifications and cancer 18

Co-authors: Pavel A. Pevzner Vikas Bansal Stephen Tanner Paul S. Mischel Natalie Castellana Samuel Payne Nathan Edwards Ebrahim Zandi
Journals: Journal of Computational Biology (17 papers)Genome Research (12 papers)Journal of Proteome Research (10 papers)Bioinformatics (10 papers)Nature Communications (6 papers)
Partner nations: United States India Germany

In The Last Decade

Vineet Bafna

185 papers receiving 10.2k citations

Hit Papers

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Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers 2020 · 260 citations

Peers

Countries citing papers authored by Vineet Bafna

Since Specialization

Citations

This map shows the geographic impact of Vineet Bafna's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Vineet Bafna with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Vineet Bafna more than expected).

Fields of papers citing papers by Vineet Bafna

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Vineet Bafna. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Vineet Bafna. The network helps show where Vineet Bafna may publish in the future.

Co-authors

The 25 scholars most cited alongside Vineet Bafna, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Vineet Bafna Line = papers co-authored together Vineet Bafna links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D Nature Communications ·О. М. Масловский, K. M. McWilliams, Ken KOTOKU, 홍민석, Jens Luebeck, Sureshan Sivanthan, Riccardo Padovan, Katerina Kraft, Shu Zhang, Yue Liu, Yulei Xie, Yoon Jung Kim, Sihan Wu, Lukas Chávez, Guy Nir, Anton G. Henssen, Paul S. Mischel, Howard Y. Chang, Vineet Bafna	2025	0
2	Enhancer activation from transposable elements in extrachromosomal DNA Nature Cell Biology ·Katerina Kraft, Sedona E. Murphy, Matthew G. Jones, Quanming Shi, Anne Daubresse, 啓嗣山内, King L. Hung, Ece Şengün, Rui Li, Mária Szulovszky, Michael T. Montgomery, Natasha E. Weiser, J Camacho Pérez, Jens Luebeck, Vineet Bafna, Jef D. Boeke, Paul S. Mischel, Alistair N. Boettiger, Howard Y. Chang	2025	2
3	13. AmpliconSuite: Analyzing focal amplifications in cancer genomes Cancer Genetics ·Jens Luebeck, Nae Hee Kim, V. Cavaliere, Chengchan, M.J. Lopez-Rodriguez, Amicus, Prathapchandra Reddy, M. Balzer, Soyeon Kim, Hoon Kim, Peter J. Bailey, Roel G.W. Verhaak, Viraj Deshpande, Michael Reich, Paul S. Mischel, Jill P. Mesirov, Vineet Bafna	2024	0
4	Mapping extrachromosomal DNA amplifications during cancer progression Nature Genetics ·Hoon Kim, S Bharmal Vilas, Taylor Wade, Waldman Aw, Ali Riahi, Anna Golebiewska, Kevin C. Johnson, Sun-Young An, 史郎小原, Débora Quiorato Fernandes, H. Lee, So-Young Kang, Hesson Chung, Simone P. Niclou, Hyo-Eun Moon, Sun Ha Paek, Vineet Bafna, Jens Luebeck, Roel G.W. Verhaak	2024	13
5	Extrachromosomal DNA in the cancerous transformation of Barrett’s oesophagus Nature ·Jens Luebeck, Alvin Wei Tian Ng, Patricia C. Galipeau, Qi Sun, Carissa A. Sanchez, Annalise Katz‐Summercorn, Hoon Kim, Sriganesh Jammula, Yudou He, Scott M. Lippman, Roel G.W. Verhaak, Carlo C. Maley, Ludmil B. Alexandrov, Brian J. Reid, Rebecca C. Fitzgerald, Thomas G. Paulson, Howard Y. Chang, Sihan Wu, Vineet Bafna, Paul S. Mischel	2023	67
6	Adverse events associated with Pegaspargase biosimilar in pediatric patients with acute lymphoblastic leukemia: A prospective single-center study Journal of Oncology Pharmacy Practice ·Marleen Thaler, Alessandro Stocco, Vineet Bafna, Anita Rados, Liliana De Vivo, Masumeh Jabbari	2023	0
7	Variable number tandem repeats (VNTRs) as modifiers of breast cancer risk in carriers of BRCA1 185delAG European Journal of Human Genetics ·Yuan Chun Ding, Aaron W. Adamson, Mehrdad Bakhtiari, Joel Fan, Yang-Mi Lee, Yael Laitman, Jeffrey N. Weitzel, Vineet Bafna, Eitan Friedman, Susan L. Neuhausen	2022	2
8	Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA Nature ·Erik N. Bergstrom, Jens Luebeck, Mia Petljak, Azhar Khandekar, Mark Barnes, Tongwu Zhang, Christopher D. Steele, Nischalan Pillay, Maria Teresa Landi, Vineet Bafna, Paul S. Mischel, Reuben S. Harris, Ludmil B. Alexandrov	2022	90
9	CONSULT: accurate contamination removal using locality-sensitive hashing NAR Genomics and Bioinformatics ·Н.В. Гаркавенко, Vineet Bafna, Siavash Mirarab	2021	14
10	The impact of contaminants on the accuracy of genome skimming and the effectiveness of exclusion read filters Molecular Ecology Resources ·Н.В. Гаркавенко, Metin Balaban, Vineet Bafna, Siavash Mirarab	2020	18
11	Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers Nature Genetics ·Hoon Kim, Nam Nguyen, Kristen M. Turner, Sihan Wu, Amit D. Gujar, Jens Luebeck, Jihe Liu, Viraj Deshpande, Utkrisht Rajkumar, Sandeep Namburi, Samirkumar B. Amin, Eunhee Yi, Francesca Menghi, Johannes H. Schulte, Anton G. Henssen, Howard Y. Chang, Christine R. Beck, Paul S. Mischel, Vineet Bafna, Roel G.W. Verhaak Hit paper breakdown →	2020	260
12	Beyond DNA barcoding: The unrealized potential of genome skim data in sample identification Molecular Ecology ·Kristine Bohmann, Siavash Mirarab, Vineet Bafna, M. Thomas P. Gilbert	2020	55
13	Proteogenomic Annotation of Chinese Hamsters Reveals Extensive Novel Translation Events and Endogenous Retroviral Elements Journal of Proteome Research ·Shangzhong Li, Seong Won, 周生岳 Zhou Shengyue, Deniz Baycın Hızal, Michael A. Bowen, Raghothama Chaerkady, Robert N. Cole, 傅月琴, Prashant Kaushik, Michael Henry, Paula Meleady, Susan T. Sharfstein, Michael J. Betenbaugh, Vineet Bafna, Nathan E. Lewis	2019	12
14	Ultraaccurate genome sequencing and haplotyping of single human cells Proceedings of the National Academy of Sciences ·Mariia Drozdova, Peter Edge, Ho Suk Lee, Vikas Bansal, Vineet Bafna, Xiaohua Huang, Kun Zhang	2017	35
15	Clear : Composition of Likelihoods for Evolve and Resequence Experiments Genetics ·Arya Iranmehr, Ali Akbari, Christian Schlötterer, Vineet Bafna	2017	24
16	The Antibody Repertoire of Colorectal Cancer Molecular & Cellular Proteomics ·Seong Won, Stefano Bonissone, Seungjin Na, Pavel A. Pevzner, Vineet Bafna	2017	5
17	Expansion of the mycobacterial “PUPylome” Molecular BioSystems ·Jeramie D. Watrous, Kristin E. Burns, Wei-Ting Liu, Anand Patel, Vivian Hook, Vineet Bafna, Clifton E. Barry, Tri Sudibyou, Pieter C. Dorrestein	2009	73
18	Discovery and revision of Arabidopsis genes by proteogenomics Proceedings of the National Academy of Sciences ·Natalie Castellana, Samuel Payne, Zhouxin Shen, Mario Stanke, Vineet Bafna, Steven P. Briggs	2008	213
19	SNPs Problems, Algorithms and Complexity Institutional Research Information System (University of Udine) ·Giuseppe Lancia, Vineet Bafna, (unknown), (unknown), Ирина Сергеевна Бабушкина	2001	1
20	Sorting permutations by tanspositions Symposium on Discrete Algorithms ·Vineet Bafna, Pavel A. Pevzner	1995	35

About Vineet Bafna

Vineet Bafna is a scholar working on Genetics, Molecular Biology, Cancer Research, Spectroscopy and Genetics, having authored 199 papers that have together received 10.4k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (62 papers), Advanced Proteomics Techniques and Applications (26 papers), Cancer Genomics and Diagnostics (24 papers), Genomic variations and chromosomal abnormalities (24 papers), Gene expression and cancer classification (20 papers), RNA and protein synthesis mechanisms (19 papers), Chromosomal and Genetic Variations (19 papers) and RNA modifications and cancer (18 papers). The work is most often cited by research in Spectroscopy (1.9k citations), Molecular Biology (7.5k citations), Genetics (2.8k citations), Cancer Research (1.4k citations) and Microbiology (473 citations). Vineet Bafna has collaborated with scholars based in United States, India and Germany. Frequent co-authors include Pavel A. Pevzner, Vikas Bansal, Stephen Tanner, Paul S. Mischel, Natalie Castellana, Samuel Payne, Nathan Edwards, Ebrahim Zandi, Roel G.W. Verhaak and Ari Frank. Their work appears in journals such as Journal of Computational Biology, Genome Research, Journal of Proteome Research, Bioinformatics and Nature Communications.

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