Pavel A. Pevzner

94.2k total citations · 12 hit papers
255 papers, 45.5k citations indexed

About

Pavel A. Pevzner is a scholar working on Molecular Biology, Spectroscopy and Plant Science. According to data from OpenAlex, Pavel A. Pevzner has authored 255 papers receiving a total of 45.5k indexed citations (citations by other indexed papers that have themselves been cited), including 215 papers in Molecular Biology, 52 papers in Spectroscopy and 50 papers in Plant Science. Recurrent topics in Pavel A. Pevzner's work include Genomics and Phylogenetic Studies (124 papers), Advanced Proteomics Techniques and Applications (51 papers) and Chromosomal and Genetic Variations (45 papers). Pavel A. Pevzner is often cited by papers focused on Genomics and Phylogenetic Studies (124 papers), Advanced Proteomics Techniques and Applications (51 papers) and Chromosomal and Genetic Variations (45 papers). Pavel A. Pevzner collaborates with scholars based in United States, Russia and Germany. Pavel A. Pevzner's co-authors include Sergey Nurk, Glenn Tesler, Dmitry Antipov, Alexey Gurevich, Max A. Alekseyev, Anton Bankevich, Andrey D. Prjibelski, Alexander Sirotkin, Son Pham and Nikolay Vyahhi and has published in prestigious journals such as Science, Proceedings of the National Academy of Sciences and Nature Communications.

In The Last Decade

Pavel A. Pevzner

251 papers receiving 44.7k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

2012 18.0k citations Anton Bankevich, Sergey Nurk et al. Journal of Computational Biology profile →
Assembly of long, error-prone reads using repeat graphs

2019 2.9k citations Mikhail Kolmogorov, Jeffrey Yuan et al. Nature Biotechnology profile →
metaSPAdes: a new versatile metagenomic assembler

2017 2.6k citations Sergey Nurk, Pavel A. Pevzner et al. profile →
De novo identification of repeat families in large genomes

2005 1.4k citations Pavel A. Pevzner et al. profile →
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

2013 1.1k citations Sergey Nurk, Anton Bankevich et al. Journal of Computational Biology profile →
An Eulerian path approach to DNA fragment assembly

2001 779 citations Pavel A. Pevzner, Haixu Tang et al. Proceedings of the National Academy of Sciences profile →
MS-GF+ makes progress towards a universal database search tool for proteomics

2014 778 citations Pavel A. Pevzner et al. profile →
metaFlye: scalable long-read metagenome assembly using repeat graphs

2020 527 citations Mikhail Kolmogorov, Derek M. Bickhart et al. Nature Methods profile →
PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling

2005 508 citations Pavel A. Pevzner et al. profile →
hybridSPAdes: an algorithm for hybrid assembly of short and long reads

2015 412 citations Dmitry Antipov, Pavel A. Pevzner et al. Bioinformatics profile →
plasmidSPAdes: assembling plasmids from whole genome sequencing data

2016 397 citations Dmitry Antipov, Nolan T. Hartwick et al. Bioinformatics profile →
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

2022 126 citations Derek M. Bickhart, Mikhail Kolmogorov et al. Nature Biotechnology profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Pavel A. Pevzner United States	78	29.3k	9.9k	9.2k	6.1k	4.4k	255	45.5k
Minoru Kanehisa Japan	75	76.3k 2.6×	11.1k 1.1×	14.1k 1.5×	10.1k 1.7×	2.5k 0.6×	266	114.1k
Eugene W. Myers United States	49	50.9k 1.7×	14.0k 1.4×	19.4k 2.1×	11.8k 1.9×	826 0.2×	126	88.6k
Warren Gish United States	17	46.9k 1.6×	13.8k 1.4×	18.4k 2.0×	10.5k 1.7×	853 0.2×	20	80.8k
David J. Lipman United States	50	66.4k 2.3×	18.0k 1.8×	22.8k 2.5×	15.0k 2.5×	1.5k 0.3×	80	112.8k
Christian von Mering Switzerland	68	45.6k 1.6×	6.0k 0.6×	7.0k 0.8×	6.3k 1.0×	2.0k 0.5×	134	69.7k
Sean R. Eddy United States	80	54.3k 1.9×	13.1k 1.3×	18.3k 2.0×	9.1k 1.5×	875 0.2×	127	75.9k
Webb Miller United States	10	43.9k 1.5×	13.5k 1.4×	17.6k 1.9×	9.9k 1.6×	783 0.2×	10	76.7k
Alex Bateman United Kingdom	69	40.4k 1.4×	7.4k 0.7×	13.7k 1.5×	6.8k 1.1×	1.1k 0.3×	158	57.2k
Gunnar von Heijne Sweden	106	57.6k 2.0×	7.4k 0.7×	13.5k 1.5×	12.6k 2.1×	2.6k 0.6×	357	81.9k
Toby J. Gibson Germany	69	65.8k 2.2×	16.2k 1.6×	24.7k 2.7×	16.2k 2.7×	1.4k 0.3×	148	116.5k

Countries citing papers authored by Pavel A. Pevzner

Since Specialization

Citations

This map shows the geographic impact of Pavel A. Pevzner's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Pavel A. Pevzner with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Pavel A. Pevzner more than expected).

Fields of papers citing papers by Pavel A. Pevzner

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Pavel A. Pevzner. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Pavel A. Pevzner. The network helps show where Pavel A. Pevzner may publish in the future.

Co-authorship network of co-authors of Pavel A. Pevzner

This figure shows the co-authorship network connecting the top 25 collaborators of Pavel A. Pevzner. A scholar is included among the top collaborators of Pavel A. Pevzner based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Pavel A. Pevzner. Pavel A. Pevzner is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Bzikadze, Andrey V. & Pavel A. Pevzner. (2023). UniAligner: a parameter-free framework for fast sequence alignment. Nature Methods. 20(9). 1346–1354. 9 indexed citations

Pevzner, Pavel A., Martin Vingron, Christian M. Reidys, Fengzhu Sun, & Sorin Istrail. (2022). Michael Waterman's Contributions to Computational Biology and Bioinformatics. Journal of Computational Biology. 29(7). 601–615. 1 indexed citations

Mikheenko, Alla, Andrey V. Bzikadze, Alexey Gurevich, Karen H. Miga, & Pavel A. Pevzner. (2020). TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats. Bioinformatics. 36(Supplement_1). i75–i83. 31 indexed citations

Dvorkina, Tatiana, Andrey V. Bzikadze, & Pavel A. Pevzner. (2020). The string decomposition problem and its applications to centromere analysis and assembly. Bioinformatics. 36(Supplement_1). i93–i101. 23 indexed citations

Bzikadze, Andrey V. & Pavel A. Pevzner. (2020). Automated assembly of centromeres from ultra-long error-prone reads. Nature Biotechnology. 38(11). 1309–1316. 42 indexed citations

Kolmogorov, Mikhail, Derek M. Bickhart, Bahar Behsaz, et al.. (2020). metaFlye: scalable long-read metagenome assembly using repeat graphs. Nature Methods. 17(11). 1103–1110. 527 indexed citations breakdown →

Kolmogorov, Mikhail, Jeffrey Yuan, Yu Lin, & Pavel A. Pevzner. (2019). Assembly of long, error-prone reads using repeat graphs. Nature Biotechnology. 37(5). 540–546. 2927 indexed citations breakdown →

Lin, Yu, Jeffrey Yuan, Mikhail Kolmogorov, et al.. (2016). Assembly of long error-prone reads using de Bruijn graphs. Proceedings of the National Academy of Sciences. 113(52). E8396–E8405. 209 indexed citations

Antipov, Dmitry, Nolan T. Hartwick, Max W. Shen, et al.. (2016). plasmidSPAdes: assembling plasmids from whole genome sequencing data. Bioinformatics. 32(22). 3380–3387. 397 indexed citations breakdown →

10.

Bankevich, Anton, Sergey Nurk, Dmitry Antipov, et al.. (2012). SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. Journal of Computational Biology. 19(5). 455–477. 17957 indexed citations breakdown →

11.

Pham, Son, Dmitry Antipov, Alexander Sirotkin, et al.. (2012). Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. Journal of Computational Biology. 20(4). 359–371. 12 indexed citations

12.

Mohimani, Hosein, Wei-Ting Liu, Yuliang Yang, et al.. (2011). Multiplex De Novo Sequencing of Peptide Antibiotics. Journal of Computational Biology. 18(11). 1371–1381. 33 indexed citations

13.

Medvedev, Paul, Son Pham, Mark Chaisson, Glenn Tesler, & Pavel A. Pevzner. (2011). Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. Journal of Computational Biology. 18(11). 1625–1634. 37 indexed citations

14.

Liu, Wei-Ting, Yuliang Yang, Yuquan Xu, et al.. (2010). Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis. Proceedings of the National Academy of Sciences. 107(37). 16286–16290. 157 indexed citations

15.

Raphael, Benjamin J. & Pavel A. Pevzner. (2004). Reconstructing tumor amplisomes. Bioinformatics. 20(suppl_1). i265–i273. 23 indexed citations

16.

Vingron, Martin, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, & Webb Miller. (2003). Proceedings of the seventh annual international conference on Research in computational molecular biology. 5 indexed citations

17.

Pevzner, Pavel A., Haixu Tang, & Michael S. Waterman. (2001). An Eulerian path approach to DNA fragment assembly. Proceedings of the National Academy of Sciences. 98(17). 9748–9753. 779 indexed citations breakdown →

18.

Shamir, Ron, et al.. (2000). RECOMB 2000 : proceedings of the Fourth annual international conference on computational molecular biology : April 8-11, 2000, Tokyo, Japan. Association for Computing Machinery eBooks. 2 indexed citations

19.

Istrail, Sorin, et al.. (1999). RECOMB 99 : proceedings of the Third annual international conference on computational molecular biology : April 11-14, 1999, Hotel de Lyon Metropole, Lyon, France. Association for Computing Machinery eBooks. 2 indexed citations

20.

Hannenhalli, Sridhar & Pavel A. Pevzner. (1996). To cut…or not to cut (applications of comparative physical maps in molecular evolution). Symposium on Discrete Algorithms. 304–313. 23 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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