Vijay Ramani

6.6k total citations · 2 hit papers
66 papers, 3.9k citations indexed

About

Vijay Ramani is a scholar working on Molecular Biology, Surgery and Pulmonary and Respiratory Medicine. According to data from OpenAlex, Vijay Ramani has authored 66 papers receiving a total of 3.9k indexed citations (citations by other indexed papers that have themselves been cited), including 32 papers in Molecular Biology, 14 papers in Surgery and 13 papers in Pulmonary and Respiratory Medicine. Recurrent topics in Vijay Ramani's work include Genomics and Chromatin Dynamics (19 papers), Single-cell and spatial transcriptomics (9 papers) and Prostate Cancer Treatment and Research (8 papers). Vijay Ramani is often cited by papers focused on Genomics and Chromatin Dynamics (19 papers), Single-cell and spatial transcriptomics (9 papers) and Prostate Cancer Treatment and Research (8 papers). Vijay Ramani collaborates with scholars based in United States, United Kingdom and Germany. Vijay Ramani's co-authors include Jay Shendure, Frank J. Steemers, Cole Trapnell, Riza M. Daza, Junyue Cao, Jonathan S. Packer, Noel W. Clarke, Darren A. Cusanovich, Andrew C. Adey and Ruolan Qiu and has published in prestigious journals such as Science, Cell and Nature Communications.

In The Last Decade

Vijay Ramani

63 papers receiving 3.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Comprehensive single-cell transcriptional profiling of a multicellular organism

2017 896 citations Junyue Cao, Jonathan S. Packer et al. Science profile →
Joint profiling of chromatin accessibility and gene expression in thousands of single cells

2018 585 citations Junyue Cao, Darren A. Cusanovich et al. Science profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Vijay Ramani United States	25	2.9k	558	538	449	369	66	3.9k
Kai Tan United States	36	2.8k 1.0×	389 0.7×	360 0.7×	686 1.5×	117 0.3×	98	3.9k
Raktima Raychowdhury United States	21	3.1k 1.1×	563 1.0×	528 1.0×	917 2.0×	594 1.6×	32	4.4k
Tamir Chandra United Kingdom	25	3.4k 1.2×	606 1.1×	433 0.8×	1.2k 2.6×	106 0.3×	47	4.6k
Cátálin Bárbácioru United States	19	3.7k 1.3×	1.1k 2.0×	622 1.2×	589 1.3×	237 0.6×	34	4.9k
Asim Siddiqui Canada	16	3.0k 1.0×	815 1.5×	328 0.6×	546 1.2×	198 0.5×	30	4.3k
Darren A. Cusanovich United States	18	4.1k 1.4×	818 1.5×	278 0.5×	528 1.2×	105 0.3×	28	4.7k
Iain C. Macaulay United Kingdom	35	4.4k 1.5×	1.1k 2.0×	457 0.8×	1.2k 2.6×	249 0.7×	62	5.9k
Hana Imrichová Belgium	17	3.8k 1.3×	874 1.6×	1.1k 2.1×	1.5k 3.4×	235 0.6×	23	5.5k
Arttu Jolma Sweden	19	5.4k 1.9×	669 1.2×	374 0.7×	452 1.0×	126 0.3×	25	6.3k
Hideya Kawaji Japan	40	4.2k 1.5×	1.3k 2.4×	421 0.8×	927 2.1×	216 0.6×	126	5.7k

Countries citing papers authored by Vijay Ramani

Since Specialization

Citations

This map shows the geographic impact of Vijay Ramani's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Vijay Ramani with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Vijay Ramani more than expected).

Fields of papers citing papers by Vijay Ramani

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Vijay Ramani. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Vijay Ramani. The network helps show where Vijay Ramani may publish in the future.

Co-authorship network of co-authors of Vijay Ramani

This figure shows the co-authorship network connecting the top 25 collaborators of Vijay Ramani. A scholar is included among the top collaborators of Vijay Ramani based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Vijay Ramani. Vijay Ramani is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Chio, Un Seng, et al.. (2025). HMGB1 deforms nucleosomal DNA to generate a dynamic chromatin environment counteracting the effects of linker histone. Science Advances. 11(33). eads4473–eads4473. 1 indexed citations

Freie, Brian, Patrick A. Carroll, Barbara Varnum‐Finney, et al.. (2024). A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & Development. 38(5-6). 253–272. 3 indexed citations

Nanda, Arjun S., Ke Wu, Iryna Irkliyenko, et al.. (2024). Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature Genetics. 56(6). 1300–1309. 8 indexed citations

Nora, Elphège P., et al.. (2024). Beyond genomic weaving: molecular roles for CTCF outside cohesin loop extrusion. Current Opinion in Genetics & Development. 90. 102298–102298. 3 indexed citations

Suresh, Harsha Garadi, Henry N. Ward, Ian Jones, et al.. (2024). The PRC2.1 subcomplex opposes G1 progression through regulation of CCND1 and CCND2. eLife. 13.

Bonora, Giancarlo, Vijay Ramani, Ritambhara Singh, et al.. (2021). Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation. Genome biology. 22(1). 279–279. 16 indexed citations

Carroll, Patrick A., Brian Freie, Pei Cheng, et al.. (2021). The glucose-sensing transcription factor MLX balances metabolism and stress to suppress apoptosis and maintain spermatogenesis. PLoS Biology. 19(10). e3001085–e3001085. 13 indexed citations

Yardımcı, Galip Gürkan, Giancarlo Bonora, Vijay Ramani, et al.. (2020). Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. PLoS Computational Biology. 16(9). e1008173–e1008173. 57 indexed citations

Srivatsan, Sanjay, José L. McFaline‐Figueroa, Vijay Ramani, et al.. (2019). Massively multiplex chemical transcriptomics at single-cell resolution. Science. 367(6473). 45–51. 198 indexed citations

10.

Ramani, Vijay, Xinxian Deng, Ruolan Qiu, et al.. (2019). Sci-Hi-C: A single-cell Hi-C method for mapping 3D genome organization in large number of single cells. Methods. 170. 61–68. 57 indexed citations

11.

Cao, Junyue, Darren A. Cusanovich, Vijay Ramani, et al.. (2018). Joint profiling of chromatin accessibility and gene expression in thousands of single cells. Science. 361(6409). 1380–1385. 585 indexed citations breakdown →

12.

Bonora, Giancarlo, Xinxian Deng, He Fang, et al.. (2018). Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome. Nature Communications. 9(1). 1445–1445. 50 indexed citations

13.

Cao, Junyue, Jonathan S. Packer, Vijay Ramani, et al.. (2017). Comprehensive single-cell transcriptional profiling of a multicellular organism. Science. 357(6352). 661–667. 896 indexed citations breakdown →

14.

Ramani, Vijay, Xinxian Deng, Ruolan Qiu, et al.. (2017). Massively multiplex single-cell Hi-C. Nature Methods. 14(3). 263–266. 380 indexed citations

15.

Ramani, Vijay, Jay Shendure, & Zhijun Duan. (2016). Understanding Spatial Genome Organization: Methods and Insights. Genomics Proteomics & Bioinformatics. 14(1). 7–20. 42 indexed citations

16.

Ramani, Vijay, Darren A. Cusanovich, Ronald J. Hause, et al.. (2016). Mapping 3D genome architecture through in situ DNase Hi-C. Nature Protocols. 11(11). 2104–2121. 81 indexed citations

17.

Deng, Xinxian, Wenxiu Ma, Vijay Ramani, et al.. (2015). Bipartite structure of the inactive mouse X chromosome. Genome biology. 16(1). 152–152. 170 indexed citations

18.

Anandadas, Carmel, S.E. Davidson, Noel W. Clarke, et al.. (2011). Quality of Life in Men Treated for Early Prostate Cancer: A Prospective Patient Preference Cohort Study. Journal of Cancer Therapy. 2(4). 448–457. 1 indexed citations

19.

Samuel, J., et al.. (2009). Hoechst 33342 Side Population Identification Is a Conserved and Unified Mechanism in Urological Cancers. Stem Cells and Development. 18(10). 1515–1522. 47 indexed citations

20.

Hart, Claire A., et al.. (2004). Differential Inhibition of Invasion and Proliferation by Bisphosphonates: Anti-Metastatic Potential of Zoledronic Acid in Prostate Cancer. European Urology. 46(3). 389–402. 45 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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