Choli Lee

17.8k total citations · 7 hit papers
36 papers, 8.1k citations indexed

About

Choli Lee is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, Choli Lee has authored 36 papers receiving a total of 8.1k indexed citations (citations by other indexed papers that have themselves been cited), including 29 papers in Molecular Biology, 10 papers in Genetics and 8 papers in Plant Science. Recurrent topics in Choli Lee's work include RNA and protein synthesis mechanisms (12 papers), Genomics and Chromatin Dynamics (11 papers) and Single-cell and spatial transcriptomics (9 papers). Choli Lee is often cited by papers focused on RNA and protein synthesis mechanisms (12 papers), Genomics and Chromatin Dynamics (11 papers) and Single-cell and spatial transcriptomics (9 papers). Choli Lee collaborates with scholars based in United States, United Kingdom and Netherlands. Choli Lee's co-authors include Jay Shendure, Sarah Ng, Deborah A. Nickerson, Abigail W. Bigham, Michael J. Bamshad, Evan E. Eichler, Emily H. Turner, Riza M. Daza, Holly K. Tabor and Ethylin Wang Jabs and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

Choli Lee

36 papers receiving 8.0k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Targeted capture and massively parallel sequencing of 12 human exomes

2009 1.3k citations Sarah Ng, Emily H. Turner et al. Nature profile →
Exome sequencing identifies the cause of a mendelian disorder

2009 1.3k citations Sarah Ng, Choli Lee et al. Nature Genetics profile →
Comprehensive single-cell transcriptional profiling of a multicellular organism

2017 896 citations Junyue Cao, Jonathan S. Packer et al. Science profile →
Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations

2011 806 citations Brian J. O’Roak, Pelagia Deriziotis et al. Nature Genetics profile →
A three-dimensional model of the yeast genome

2010 750 citations Zhijun Duan, Mirela Andronescu et al. Nature profile →
A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility

2018 474 citations Darren A. Cusanovich, Riza M. Daza et al. Cell profile →
Precise genomic deletions using paired prime editing

2021 179 citations Junhong Choi, Wei Chen et al. Nature Biotechnology profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Choli Lee United States	25	5.7k	2.9k	1.1k	755	404	36	8.1k
Sarah Ng United States	20	3.5k 0.6×	3.1k 1.1×	1.0k 0.9×	283 0.4×	410 1.0×	33	6.1k
Lars Feuk Sweden	35	4.9k 0.9×	5.5k 1.9×	1.2k 1.1×	1.7k 2.3×	267 0.7×	85	8.8k
Alexandre Reymond Switzerland	48	5.9k 1.0×	2.6k 0.9×	987 0.9×	1.1k 1.5×	267 0.7×	122	8.6k
Richard R. Meehan United Kingdom	49	6.8k 1.2×	2.7k 0.9×	610 0.5×	502 0.7×	470 1.2×	111	8.4k
John M. Greally United States	53	6.8k 1.2×	2.3k 0.8×	1.0k 0.9×	579 0.8×	107 0.3×	196	9.1k
Nadav Ahituv United States	44	6.2k 1.1×	2.1k 0.7×	574 0.5×	904 1.2×	290 0.7×	143	8.1k
Albert W. Cheng United States	34	11.4k 2.0×	3.0k 1.0×	881 0.8×	684 0.9×	261 0.6×	51	13.0k
Raju Kucherlapati United States	39	4.4k 0.8×	2.1k 0.7×	852 0.8×	368 0.5×	224 0.6×	70	6.9k
Barbara E. Stranger United States	36	4.2k 0.7×	3.8k 1.3×	932 0.8×	570 0.8×	108 0.3×	72	7.6k
Bradley P. Coe United States	36	3.1k 0.5×	3.4k 1.2×	880 0.8×	801 1.1×	956 2.4×	66	5.8k

Countries citing papers authored by Choli Lee

Since Specialization

Citations

This map shows the geographic impact of Choli Lee's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Choli Lee with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Choli Lee more than expected).

Fields of papers citing papers by Choli Lee

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Choli Lee. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Choli Lee. The network helps show where Choli Lee may publish in the future.

Co-authorship network of co-authors of Choli Lee

This figure shows the co-authorship network connecting the top 25 collaborators of Choli Lee. A scholar is included among the top collaborators of Choli Lee based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Choli Lee. Choli Lee is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Suiter, Chase C., Diego Calderon, David Lee, et al.. (2025). Combinatorial mapping of E3 ubiquitin ligases to their target substrates. Molecular Cell. 85(4). 829–842.e6. 3 indexed citations

Chen, Wei, Junhong Choi, Xiaoyi Li, et al.. (2024). Symbolic recording of signalling and cis-regulatory element activity to DNA. Nature. 632(8027). 1073–1081. 20 indexed citations

Hamazaki, Nobuhiko, Wei Yang, Chengxiang Qiu, et al.. (2024). Retinoic acid induces human gastruloids with posterior embryo-like structures. Nature Cell Biology. 26(10). 1790–1803. 12 indexed citations

Lalanne, Jean‐Benoît, Samuel G. Regalado, Silvia Domcke, et al.. (2024). Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters. Nature Methods. 21(6). 983–993. 13 indexed citations

Li, Xiaoyi, Wei Chen, Beth Martin, et al.. (2024). Chromatin context-dependent regulation and epigenetic manipulation of prime editing. Cell. 187(10). 2411–2427.e25. 35 indexed citations

Choi, Junhong, Wei Chen, Anna Minkina, et al.. (2022). A time-resolved, multi-symbol molecular recorder via sequential genome editing. Nature. 608(7921). 98–107. 86 indexed citations

Bonora, Giancarlo, Vijay Ramani, Ritambhara Singh, et al.. (2021). Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation. Genome biology. 22(1). 279–279. 16 indexed citations

Choi, Junhong, Wei Chen, Chase C. Suiter, et al.. (2021). Precise genomic deletions using paired prime editing. Nature Biotechnology. 40(2). 218–226. 179 indexed citations breakdown →

Yardımcı, Galip Gürkan, Giancarlo Bonora, Vijay Ramani, et al.. (2020). Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. PLoS Computational Biology. 16(9). e1008173–e1008173. 57 indexed citations

10.

Ramani, Vijay, Xinxian Deng, Ruolan Qiu, et al.. (2019). Sci-Hi-C: A single-cell Hi-C method for mapping 3D genome organization in large number of single cells. Methods. 170. 61–68. 57 indexed citations

11.

Cao, Junyue, Jonathan S. Packer, Vijay Ramani, et al.. (2017). Comprehensive single-cell transcriptional profiling of a multicellular organism. Science. 357(6352). 661–667. 896 indexed citations breakdown →

12.

Gasperini, Molly, Gregory M. Findlay, Aaron McKenna, et al.. (2017). CRISPR/Cas9-Mediated Scanning for Regulatory Elements Required for HPRT1 Expression via Thousands of Large, Programmed Genomic Deletions. The American Journal of Human Genetics. 101(2). 192–205. 93 indexed citations

13.

Adey, Andrew C., Joshua N. Burton, Jacob O. Kitzman, et al.. (2013). The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line. Nature. 500(7461). 207–211. 246 indexed citations

14.

Duan, Zhijun, Mirela Andronescu, Kevin Schutz, et al.. (2012). A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes. Methods. 58(3). 277–288. 20 indexed citations

15.

Itsara, Andy, Lisenka E.L.M. Vissers, Karyn Meltz Steinberg, et al.. (2012). Resolving the Breakpoints of the 17q21.31 Microdeletion Syndrome with Next-Generation Sequencing. The American Journal of Human Genetics. 90(4). 599–613. 16 indexed citations

16.

Schwartz, Jerrod J., Choli Lee, & Jay Shendure. (2012). Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules. Nature Methods. 9(9). 913–915. 65 indexed citations

17.

Ventura, Mario, Claudia Rita Catacchio, Can Alkan, et al.. (2011). Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee. Genome Research. 21(10). 1640–1649. 55 indexed citations

18.

Muthappan, Valliammai, Aaron Lee, Tamara Lamprecht, et al.. (2011). Biome representational in silico karyotyping. Genome Research. 21(4). 626–633. 18 indexed citations

19.

O’Roak, Brian J., Pelagia Deriziotis, Choli Lee, et al.. (2011). Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations. Nature Genetics. 43(6). 585–589. 806 indexed citations breakdown →

20.

Patwardhan, Rupali P, Choli Lee, Oren Litvin, et al.. (2009). High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis. Nature Biotechnology. 27(12). 1173–1175. 263 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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