Uğis Sarkans

11.8k total citations · 3 hit papers
29 papers, 2.5k citations indexed

About

Uğis Sarkans is a scholar working on Molecular Biology, Information Systems and Management and Biophysics. According to data from OpenAlex, Uğis Sarkans has authored 29 papers receiving a total of 2.5k indexed citations (citations by other indexed papers that have themselves been cited), including 24 papers in Molecular Biology, 6 papers in Information Systems and Management and 5 papers in Biophysics. Recurrent topics in Uğis Sarkans's work include Gene expression and cancer classification (17 papers), Bioinformatics and Genomic Networks (12 papers) and Biomedical Text Mining and Ontologies (8 papers). Uğis Sarkans is often cited by papers focused on Gene expression and cancer classification (17 papers), Bioinformatics and Genomic Networks (12 papers) and Biomedical Text Mining and Ontologies (8 papers). Uğis Sarkans collaborates with scholars based in United Kingdom, Germany and Finland. Uğis Sarkans's co-authors include Alvis Brāzma, Helen Parkinson, Robert Petryszak, Misha Kapushesky, Ahmed Yousif Ali, Awais Athar, Gabriella Rustici, Catherine Snow, Eleanor Williams and Niran Abeygunawardena and has published in prestigious journals such as Nucleic Acids Research, Bioinformatics and Journal of Molecular Biology.

In The Last Decade

Uğis Sarkans

29 papers receiving 2.5k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

ArrayExpress--a public database of microarray experiments and gene expression profiles

2006 539 citations Helen Parkinson, Misha Kapushesky et al. Nucleic Acids Research profile →
ArrayExpress update—simplifying data submissions

2014 509 citations N. N. Kolesnikov, Emma Hastings et al. Nucleic Acids Research profile →
ArrayExpress update – from bulk to single-cell expression data

2018 377 citations Awais Athar, Anja Füllgrabe et al. Nucleic Acids Research profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Uğis Sarkans United Kingdom	18	1.9k	289	262	254	158	29	2.5k
Jacob Hughey United States	21	1.1k 0.6×	275 1.0×	261 1.0×	131 0.5×	100 0.6×	48	2.4k
Akira Funahashi Japan	19	2.0k 1.1×	142 0.5×	147 0.6×	146 0.6×	77 0.5×	72	2.9k
Pascale Gaudet Switzerland	24	2.2k 1.2×	214 0.7×	64 0.2×	365 1.4×	211 1.3×	69	3.2k
Amelia Ireland United Kingdom	5	2.4k 1.3×	162 0.6×	45 0.2×	360 1.4×	246 1.6×	5	3.1k
Daniel Marbach Switzerland	17	2.9k 1.6×	135 0.5×	112 0.4×	389 1.5×	107 0.7×	29	3.6k
Fedor Kolpakov Russia	18	1.4k 0.8×	242 0.8×	48 0.2×	251 1.0×	70 0.4×	75	1.9k
Gabriella Rustici United Kingdom	16	1.5k 0.8×	135 0.5×	161 0.6×	143 0.6×	204 1.3×	26	1.9k
Ion I. Moraru United States	23	1.8k 0.9×	46 0.2×	207 0.8×	117 0.5×	71 0.4×	59	2.5k
Lee Kamentsky United States	13	1.5k 0.8×	154 0.5×	984 3.8×	122 0.5×	58 0.4×	21	2.9k
Jingyi Jessica Li United States	29	2.4k 1.3×	539 1.9×	157 0.6×	273 1.1×	289 1.8×	98	3.2k

Countries citing papers authored by Uğis Sarkans

Since Specialization

Citations

This map shows the geographic impact of Uğis Sarkans's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Uğis Sarkans with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Uğis Sarkans more than expected).

Fields of papers citing papers by Uğis Sarkans

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Uğis Sarkans. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Uğis Sarkans. The network helps show where Uğis Sarkans may publish in the future.

Co-authorship network of co-authors of Uğis Sarkans

This figure shows the co-authorship network connecting the top 25 collaborators of Uğis Sarkans. A scholar is included among the top collaborators of Uğis Sarkans based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Uğis Sarkans. Uğis Sarkans is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Exner, Thomas E., et al.. (2024). Knowledge infrastructure for integrated data management and analysis supporting new approach methods in predictive toxicology and risk assessment. Toxicology in Vitro. 100. 105903–105903. 2 indexed citations

Hartley, Matthew, et al.. (2023). Providing open imaging data at scale: An EMBL-EBI perspective. Histochemistry and Cell Biology. 160(3). 211–221. 2 indexed citations

Hartley, Matthew, Gerard J. Kleywegt, Ardan Patwardhan, et al.. (2022). The BioImage Archive – Building a Home for Life-Sciences Microscopy Data. Journal of Molecular Biology. 434(11). 167505–167505. 64 indexed citations

Iudin, A., Uğis Sarkans, Mohamed A. Koronfel, et al.. (2021). Data-deposition protocols for correlative soft X-ray tomography and super-resolution structured illumination microscopy applications. STAR Protocols. 2(1). 100253–100253. 6 indexed citations

Athar, Awais, Anja Füllgrabe, Nancy George, et al.. (2018). ArrayExpress update – from bulk to single-cell expression data. Nucleic Acids Research. 47(D1). D711–D715. 377 indexed citations breakdown →

Williams, Eleanor, Josh Moore, Simon Li, et al.. (2017). Image Data Resource: a bioimage data integration and publication platform. Nature Methods. 14(8). 775–781. 160 indexed citations

Sarkans, Uğis, Awais Athar, Ahmed Yousif Ali, et al.. (2017). The BioStudies database—one stop shop for all data supporting a life sciences study. Nucleic Acids Research. 46(D1). D1266–D1270. 129 indexed citations

Kolesnikov, N. N., Emma Hastings, Maria Keays, et al.. (2014). ArrayExpress update—simplifying data submissions. Nucleic Acids Research. 43(D1). D1113–D1116. 509 indexed citations breakdown →

Ruggeri, Barbara, Uğis Sarkans, Günter Schumann, & Antonio M. Persico. (2013). Biomarkers in autism spectrum disorder: the old and the new. Psychopharmacology. 231(6). 1201–1216. 142 indexed citations

10.

Faulconbridge, Adam, Tony Burdett, Marco Brandizi, et al.. (2013). Updates to BioSamples database at European Bioinformatics Institute. Nucleic Acids Research. 42(D1). D50–D52. 19 indexed citations

11.

Faulconbridge, Adam, Marco Brandizi, Julio Fernandez-Banet, et al.. (2011). The BioSample Database (BioSD) at the European Bioinformatics Institute. Nucleic Acids Research. 40(D1). D64–D70. 42 indexed citations

12.

Krestyaninova, Maria, Juris Vīksna, Natalja Kurbatova, et al.. (2009). A System for Information Management in BioMedical Studies—SIMBioMS. Bioinformatics. 25(20). 2768–2769. 14 indexed citations

13.

Brāzma, Alvis, et al.. (2006). [20] Data Storage and Analysis in ArrayExpress. Methods in enzymology on CD-ROM/Methods in enzymology. 411. 370–386. 32 indexed citations

14.

Parkinson, Helen, Misha Kapushesky, Niran Abeygunawardena, et al.. (2006). ArrayExpress--a public database of microarray experiments and gene expression profiles. Nucleic Acids Research. 35(Database). D747–D750. 539 indexed citations breakdown →

15.

Brāzma, Alvis, Maria Krestyaninova, & Uğis Sarkans. (2006). Standards for systems biology. Nature Reviews Genetics. 7(8). 593–605. 101 indexed citations

16.

Mukherjee, Gaurab, Niran Abeygunawardena, Helen Parkinson, et al.. (2005). Plant-Based Microarray Data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a Submission Tool for Arabidopsis Gene Expression Data to ArrayExpress. PLANT PHYSIOLOGY. 139(2). 632–636. 5 indexed citations

17.

Kapushesky, Misha, Patrick Kemmeren, Aedín C. Culhane, et al.. (2004). Expression Profiler: next generation--an online platform for analysis of microarray data. Nucleic Acids Research. 32(Web Server). W465–W470. 94 indexed citations

18.

Sarkans, Uğis, Helen Parkinson, Arya M. Sharma, et al.. (2004). The ArrayExpress gene expression database: a software engineering and implementation perspective. Computer applications in the biosciences. 21(8). 1495–1501. 22 indexed citations

19.

Rocca‐Serra, Philippe, Alvis Brāzma, Helen Parkinson, et al.. (2003). ArrayExpress: a public database of gene expression data at EBI. Comptes Rendus Biologies. 326(10-11). 1075–1078. 67 indexed citations

20.

Brāzma, Alvis, Uğis Sarkans, Alan J. Robinson, et al.. (2002). Microarray Data Representation, Annotation and Storage. Advances in biochemical engineering, biotechnology. 77. 113–139. 23 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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