Irene Papatheodorou

20.6k total citations · 2 hit papers
45 papers, 1.4k citations indexed

About

Irene Papatheodorou is a scholar working on Molecular Biology, Aging and Biophysics. According to data from OpenAlex, Irene Papatheodorou has authored 45 papers receiving a total of 1.4k indexed citations (citations by other indexed papers that have themselves been cited), including 35 papers in Molecular Biology, 7 papers in Aging and 6 papers in Biophysics. Recurrent topics in Irene Papatheodorou's work include Single-cell and spatial transcriptomics (15 papers), Bioinformatics and Genomic Networks (9 papers) and Genetics, Aging, and Longevity in Model Organisms (7 papers). Irene Papatheodorou is often cited by papers focused on Single-cell and spatial transcriptomics (15 papers), Bioinformatics and Genomic Networks (9 papers) and Genetics, Aging, and Longevity in Model Organisms (7 papers). Irene Papatheodorou collaborates with scholars based in United Kingdom, United States and Russia. Irene Papatheodorou's co-authors include Alvis Brāzma, Nancy George, Ahmed Yousif Ali, Uğis Sarkans, Haider Iqbal, Awais Athar, Anja Füllgrabe, Nuno A. Fonseca, Laura Huerta and Janet M. Thornton and has published in prestigious journals such as Nucleic Acids Research, Nature Communications and Nature Genetics.

In The Last Decade

Irene Papatheodorou

44 papers receiving 1.4k citations

Hit Papers

2 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

ArrayExpress update – from bulk to single-cell expression data

2018 377 citations Awais Athar, Anja Füllgrabe et al. Nucleic Acids Research profile →
A compendium of uniformly processed human gene expression and splicing quantitative trait loci

2021 165 citations Tony Burdett, Irene Papatheodorou et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Irene Papatheodorou United Kingdom	17	988	200	176	166	163	45	1.4k
Arunachalam Vinayagam United States	22	1.9k 1.9×	124 0.6×	189 1.1×	238 1.4×	98 0.6×	30	2.4k
Noah Davidsohn United States	8	1.7k 1.7×	214 1.1×	57 0.3×	279 1.7×	83 0.5×	9	1.9k
Jan Eglinger Switzerland	16	1.4k 1.4×	56 0.3×	74 0.4×	84 0.5×	100 0.6×	25	1.7k
Vicky Yao United States	12	611 0.6×	180 0.9×	82 0.5×	205 1.2×	53 0.3×	22	1.0k
Matthew Hibbs United States	22	2.1k 2.1×	69 0.3×	85 0.5×	259 1.6×	105 0.6×	33	2.6k
Jiashun Zheng United States	16	1.3k 1.4×	142 0.7×	68 0.4×	154 0.9×	96 0.6×	23	1.6k
Nicholas S. Tolwinski Singapore	27	2.0k 2.0×	156 0.8×	144 0.8×	206 1.2×	188 1.2×	57	2.6k
Mihai Albu Canada	11	2.1k 2.1×	72 0.4×	225 1.3×	275 1.7×	342 2.1×	20	2.6k
Andrew M. Gross United States	14	1.4k 1.4×	75 0.4×	55 0.3×	253 1.5×	355 2.2×	27	2.0k
Sergi Regot United States	18	1.9k 2.0×	56 0.3×	151 0.9×	140 0.8×	287 1.8×	27	2.3k

Countries citing papers authored by Irene Papatheodorou

Since Specialization

Citations

This map shows the geographic impact of Irene Papatheodorou's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Irene Papatheodorou with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Irene Papatheodorou more than expected).

Fields of papers citing papers by Irene Papatheodorou

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Irene Papatheodorou. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Irene Papatheodorou. The network helps show where Irene Papatheodorou may publish in the future.

Co-authorship network of co-authors of Irene Papatheodorou

This figure shows the co-authorship network connecting the top 25 collaborators of Irene Papatheodorou. A scholar is included among the top collaborators of Irene Papatheodorou based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Irene Papatheodorou. Irene Papatheodorou is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Song, Yuyao, Yanhui Hu, Julian A. T. Dow, Norbert Perrimon, & Irene Papatheodorou. (2025). ScGOclust: leveraging gene ontology to find functionally analogous cell types between distant species. Bioinformatics. 41(Supplement_1). i571–i579. 1 indexed citations

Papatheodorou, Irene, et al.. (2024). Single-cell RNA sequencing offers opportunities to explore the depth of physiology, adaptation, and biochemistry in non-model organisms exposed to pollution. Comparative Biochemistry and Physiology Part D Genomics and Proteomics. 52. 101339–101339. 1 indexed citations

Chougule, Kapeel, Marcela K Tello-Ruiz, Shouhui Wei, et al.. (2024). Pan genome resources for grapevine. Acta Horticulturae. 257–266. 1 indexed citations

Moreno, Pablo, et al.. (2023). SelectBCM tool: a batch evaluation framework to select the most appropriate batch-correction methods for bulk transcriptome analysis. NAR Genomics and Bioinformatics. 5(1). 1 indexed citations

Tuggle, Christopher K., Tony Burdett, Timothy L. Tickle, et al.. (2023). PSII-6 Computational Tools and Resources for Analysis and Exploration of Single-Cell Rnaseq Data in Agriculture. Journal of Animal Science. 101(Supplement_2). 267–268. 1 indexed citations

Li, Xu, Manik Garg, Tingting Jia, et al.. (2022). Single-Cell Analysis Reveals the Immune Characteristics of Myeloid Cells and Memory T Cells in Recovered COVID-19 Patients With Different Severities. Frontiers in Immunology. 12. 781432–781432. 15 indexed citations

Fahlgren, Noah, Galabina Yordanova, Irene Papatheodorou, et al.. (2022). Toward a data infrastructure for the Plant Cell Atlas. PLANT PHYSIOLOGY. 191(1). 35–46. 8 indexed citations

Walzer, Mathias, David García‐Seisdedos, Ananth Prakash, et al.. (2022). Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas. Scientific Data. 9(1). 335–335. 16 indexed citations

Thakur, Matthew, Alex Bateman, Cath Brooksbank, et al.. (2022). EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic Acids Research. 51(D1). D9–D17. 30 indexed citations

10.

Papatheodorou, Irene, et al.. (2022). Brain Regeneration Resembles Brain Cancer at Its Early Wound Healing Stage and Diverges From Cancer Later at Its Proliferation and Differentiation Stages. Frontiers in Cell and Developmental Biology. 10. 813314–813314. 9 indexed citations

11.

Speir, Matthew L, Aparna Bhaduri, Nikolay S. Markov, et al.. (2021). UCSC Cell Browser: visualize your single-cell data. Bioinformatics. 37(23). 4578–4580. 144 indexed citations

12.

Garg, Manik, Li Xu, Pablo Moreno, et al.. (2021). Meta-analysis of COVID-19 single-cell studies confirms eight key immune responses. Scientific Reports. 11(1). 20833–20833. 9 indexed citations

13.

Athar, Awais, Anja Füllgrabe, Nancy George, et al.. (2018). ArrayExpress update – from bulk to single-cell expression data. Nucleic Acids Research. 47(D1). D711–D715. 377 indexed citations breakdown →

14.

Alic, Nazif, Maria E. Giannakou, Irene Papatheodorou, et al.. (2014). Interplay of dFOXO and Two ETS-Family Transcription Factors Determines Lifespan in Drosophila melanogaster. PLoS Genetics. 10(9). e1004619–e1004619. 56 indexed citations

15.

Oellrich, Anika, et al.. (2014). Using association rule mining to determine promising secondary phenotyping hypotheses. Bioinformatics. 30(12). i52–i59. 7 indexed citations

16.

Ivanov, Dobril, Irene Papatheodorou, Matthias Ziehm, & Janet M. Thornton. (2013). Transcriptional feedback in the insulin signalling pathway modulates ageing in both Caenorhabditis elegans and Drosophila melanogaster. Molecular BioSystems. 9(7). 1756–1764. 4 indexed citations

17.

Papatheodorou, Irene, Matthias Ziehm, Daniela Wieser, et al.. (2012). Using Answer Set Programming to Integrate RNA Expression with Signalling Pathway Information to Infer How Mutations Affect Ageing. PLoS ONE. 7(12). e50881–e50881. 9 indexed citations

18.

Alic, Nazif, T. Daniel Andrews, Maria E. Giannakou, et al.. (2011). Genome‐wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling. Molecular Systems Biology. 7(1). 502–502. 100 indexed citations

19.

Wieser, Daniela, Irene Papatheodorou, Matthias Ziehm, & Janet M. Thornton. (2010). Computational biology for ageing. Philosophical Transactions of the Royal Society B Biological Sciences. 366(1561). 51–63. 29 indexed citations

20.

Fernández‐Pozo, Noé, et al.. (2006). Global analysis of gene expression profiles reveals both shared and distinct roles of Hnf4 alpha. 27(4). 45–7. 1 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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