Nuno A. Fonseca

23.6k total citations · 2 hit papers
63 papers, 3.0k citations indexed

About

Nuno A. Fonseca is a scholar working on Molecular Biology, Plant Science and Artificial Intelligence. According to data from OpenAlex, Nuno A. Fonseca has authored 63 papers receiving a total of 3.0k indexed citations (citations by other indexed papers that have themselves been cited), including 46 papers in Molecular Biology, 12 papers in Plant Science and 11 papers in Artificial Intelligence. Recurrent topics in Nuno A. Fonseca's work include Genomics and Phylogenetic Studies (17 papers), RNA and protein synthesis mechanisms (9 papers) and Data Mining Algorithms and Applications (7 papers). Nuno A. Fonseca is often cited by papers focused on Genomics and Phylogenetic Studies (17 papers), RNA and protein synthesis mechanisms (9 papers) and Data Mining Algorithms and Applications (7 papers). Nuno A. Fonseca collaborates with scholars based in Portugal, United Kingdom and Spain. Nuno A. Fonseca's co-authors include Alvis Brāzma, François Spitz, John C. Marioni, Vladimiro Miranda, Leonid A. Mirny, Yann Loe-Mie, Wibke Schwarzer, Geoffrey Fudenberg, Nezar Abdennur and Christian H. Haering and has published in prestigious journals such as Nature, Cell and Nucleic Acids Research.

In The Last Decade

Nuno A. Fonseca

62 papers receiving 3.0k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Two independent modes of chromatin organization revealed by cohesin removal

2017 791 citations Nuno A. Fonseca et al. profile →
ArrayExpress update – from bulk to single-cell expression data

2018 377 citations Awais Athar, Anja Füllgrabe et al. Nucleic Acids Research profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Nuno A. Fonseca Portugal	21	2.2k	632	337	282	195	63	3.0k
David P. Kreil Austria	34	2.2k 1.0×	1.5k 2.4×	318 0.9×	191 0.7×	71 0.4×	77	4.5k
Jens Lagergren Sweden	27	1.9k 0.9×	319 0.5×	729 2.2×	437 1.5×	126 0.6×	75	2.9k
Christian Iseli Switzerland	30	2.1k 1.0×	589 0.9×	550 1.6×	326 1.2×	120 0.6×	60	3.1k
Fabio Piano United States	32	2.9k 1.4×	504 0.8×	553 1.6×	389 1.4×	178 0.9×	62	4.5k
Pedro Madrigal United Kingdom	17	2.4k 1.1×	702 1.1×	333 1.0×	520 1.8×	67 0.3×	29	3.3k
Н. А. Колчанов Russia	34	3.1k 1.4×	572 0.9×	730 2.2×	273 1.0×	44 0.2×	337	4.7k
Zhaolei Zhang Canada	42	5.5k 2.6×	623 1.0×	574 1.7×	1.4k 5.1×	100 0.5×	195	7.1k
Giorgio Valle Italy	44	4.5k 2.1×	1.0k 1.7×	601 1.8×	218 0.8×	105 0.5×	140	6.4k
Sven Rahmann Germany	31	2.9k 1.3×	354 0.6×	528 1.6×	508 1.8×	46 0.2×	132	4.3k
Han Fang United States	18	2.1k 1.0×	870 1.4×	1.1k 3.4×	385 1.4×	187 1.0×	56	3.5k

Countries citing papers authored by Nuno A. Fonseca

Since Specialization

Citations

This map shows the geographic impact of Nuno A. Fonseca's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Nuno A. Fonseca with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Nuno A. Fonseca more than expected).

Fields of papers citing papers by Nuno A. Fonseca

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Nuno A. Fonseca. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Nuno A. Fonseca. The network helps show where Nuno A. Fonseca may publish in the future.

Co-authorship network of co-authors of Nuno A. Fonseca

This figure shows the co-authorship network connecting the top 25 collaborators of Nuno A. Fonseca. A scholar is included among the top collaborators of Nuno A. Fonseca based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Nuno A. Fonseca. Nuno A. Fonseca is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Carqueijeiro, Inês, et al.. (2023). The leaf idioblastome of the medicinal plantCatharanthus roseusis associated with stress resistance and alkaloid metabolism. Journal of Experimental Botany. 75(1). 274–299. 8 indexed citations

Paupério, Joana, Jesús Martínez‐Padilla, Marcos González, et al.. (2023). The InBIO barcoding initiative database: DNA barcodes of Iberian Trichoptera, documenting biodiversity for freshwater biomonitoring in a Mediterranean hotspot. ZooKeys. 11. e97484–e97484. 4 indexed citations

Egeter, Bastian, et al.. (2022). Speeding up the detection of invasive bivalve species using environmental DNA: A Nanopore and Illumina sequencing comparison. Molecular Ecology Resources. 22(6). 2232–2247. 38 indexed citations

Blom, Jochen, et al.. (2021). Comparative Genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis Strains Isolated from a Single Walnut Host Tree. Microorganisms. 9(3). 624–624. 12 indexed citations

Cavadas, Bruno, M. Fátima Leite, Ana C. Magalhães, et al.. (2021). Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori Coevolution. Microorganisms. 9(2). 240–240. 10 indexed citations

Paupério, Joana, et al.. (2021). DNA Barcoding of Portuguese Lacewings (Neuroptera) and Snakeflies (Raphidioptera) (Insecta, Neuropterida). ZooKeys. 1054. 67–84. 3 indexed citations

Tavares, Fernando, et al.. (2021). Complete Genome Sequence Obtained by Nanopore and Illumina Hybrid Assembly of Xanthomonas arboricola pv. juglandis CPBF 427, Isolated from Buds of a Walnut Tree. Microbiology Resource Announcements. 10(10). 2 indexed citations

Egeter, Bastian, et al.. (2021). Metabarcoding with MinION: Speeding up the detection of invasive aquatic species using environmental DNA and nanopore sequencing. Zenodo (CERN European Organization for Nuclear Research). 4.

Ferreira, Sónia, José Manuel Tierno de Figueroa, Filipa M. S. Martins, et al.. (2020). The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera. ZooKeys. 8. e55137–e55137. 12 indexed citations

10.

Mahata, Bidesh, Jhuma Pramanik, Louise van der Weyden, et al.. (2020). Tumors induce de novo steroid biosynthesis in T cells to evade immunity. Nature Communications. 11(1). 3588–3588. 265 indexed citations

11.

Tavares, Fernando, et al.. (2020). Complete Genome Sequences of Walnut-Associated Xanthomonas euroxanthea Strains CPBF 367 and CPBF 426 Obtained by Illumina/Nanopore Hybrid Assembly. Microbiology Resource Announcements. 9(45). 4 indexed citations

12.

Cavadas, Bruno, Rui Camacho, Rui M. Ferreira, et al.. (2020). Gastric Microbiome Diversities in Gastric Cancer Patients from Europe and Asia Mimic the Human Population Structure and Are Partly Driven by Microbiome Quantitative Trait Loci. Microorganisms. 8(8). 1196–1196. 15 indexed citations

13.

Ferreira, Sónia, Rui Andrade, Pedro Sousa, et al.. (2020). The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese Diptera 01. ZooKeys. 8. e49985–e49985. 11 indexed citations

14.

Ferreira, Sónia, Nuno A. Fonseca, Bastian Egeter, et al.. (2018). Deliverable 4.2 (D4.2): Protocol for building and organising reference collections of DNA sequences, EnvMetaGen project (Grant Agreement No 668981).. Zenodo (CERN European Organization for Nuclear Research). 8 indexed citations

15.

Vieira, Jorge, et al.. (2018). Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system. Scientific Reports. 8(1). 1717–1717. 25 indexed citations

16.

Athar, Awais, Anja Füllgrabe, Nancy George, et al.. (2018). ArrayExpress update – from bulk to single-cell expression data. Nucleic Acids Research. 47(D1). D711–D715. 377 indexed citations breakdown →

17.

García‐Alonso, Luz, Francesco Iorio, Angela Matchan, et al.. (2017). Transcription Factor Activities Enhance Markers of Drug Sensitivity in Cancer. Cancer Research. 78(3). 769–780. 107 indexed citations

18.

Fonseca, Nuno A., Rui Camacho, Ricardo Rocha, & Vı́tor Santos Costa. (2008). Compile the Hypothesis Space: Do it Once, Use it Often. Fundamenta Informaticae. 89(1). 45–67. 2 indexed citations

19.

Fonseca, Nuno A., Cristina P. Vieira, Peter W. H. Holland, & Jorge Vieira. (2008). Protein evolution of ANTP and PRD homeobox genes. BMC Evolutionary Biology. 8(1). 200–200. 6 indexed citations

20.

Fonseca, Nuno A., Vı́tor Santos Costa, & Inês Dutra. (1998). VisAll: a universal tool to visualise the parallel execution of logic programs. International Conference on Logic Programming. 100–114. 1 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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