Todd Riley

3.9k total citations · 1 hit paper
13 papers, 3.0k citations indexed

About

Todd Riley is a scholar working on Molecular Biology, Oncology and Epidemiology. According to data from OpenAlex, Todd Riley has authored 13 papers receiving a total of 3.0k indexed citations (citations by other indexed papers that have themselves been cited), including 10 papers in Molecular Biology, 2 papers in Oncology and 2 papers in Epidemiology. Recurrent topics in Todd Riley's work include Genomics and Chromatin Dynamics (6 papers), Ubiquitin and proteasome pathways (3 papers) and RNA Research and Splicing (3 papers). Todd Riley is often cited by papers focused on Genomics and Chromatin Dynamics (6 papers), Ubiquitin and proteasome pathways (3 papers) and RNA Research and Splicing (3 papers). Todd Riley collaborates with scholars based in United States, Canada and Finland. Todd Riley's co-authors include Arnold J. Levine, Eduardo D. Sontag, Patricia Chen, Harmen J. Bussemaker, Richard S. Mann, Tianyin Zhou, Remo Rohs, Namiko Abe, Matthew Slattery and George K. Michalopoulos and has published in prestigious journals such as Cell, Proceedings of the National Academy of Sciences and Nature Reviews Molecular Cell Biology.

In The Last Decade

Todd Riley

13 papers receiving 2.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Transcriptional control of human p53-regulated genes

2008 1.5k citations Todd Riley, Eduardo D. Sontag et al. Nature Reviews Molecular Cell Biology profile →

Peers

Countries citing papers authored by Todd Riley

Since Specialization

Citations

This map shows the geographic impact of Todd Riley's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Todd Riley with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Todd Riley more than expected).

Fields of papers citing papers by Todd Riley

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Todd Riley. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Todd Riley. The network helps show where Todd Riley may publish in the future.

Co-authorship network of co-authors of Todd Riley

This figure shows the co-authorship network connecting the top 25 collaborators of Todd Riley. A scholar is included among the top collaborators of Todd Riley based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Todd Riley. Todd Riley is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

13 of 13 papers shown

#	Work	Indexed citations
1	ModEx: A text mining system for extracting mode of regulation of transcription factor-gene regulatory interaction 2019 ·Journal of Biomedical Informatics ·Saman Farahmand, Todd Riley, Kourosh Zarringhalam	8
2	CXCL12/CXCR4-Mediated Procollagen Secretion Is Coupled To Cullin-RING Ubiquitin Ligase Activation 2018 ·Scientific Reports ·Susan Patalano, (unknown), (unknown), (unknown), Diego Almanza, (unknown), Todd Riley, Jill A. Macoska	12
3	Nonalcoholic Fatty Liver Disease Demonstrates a Pre-fibrotic and Premalignant Molecular Signature 2018 ·Digestive Diseases and Sciences ·Diego Almanza, Mehrnaz Gharaee‐Kermani, (unknown), (unknown), (unknown), Todd Riley, Jill A. Macoska	8
4	Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE 2015 ·eLife ·Todd Riley, Allan Lazarovici, Richard S. Mann, Harmen J. Bussemaker	30
5	SELEX-seq: A Method for Characterizing the Complete Repertoire of Binding Site Preferences for Transcription Factor Complexes 2014 ·Methods in molecular biology ·Todd Riley, Matthew Slattery, Namiko Abe, Chaitanya Rastogi, (unknown), Richard S. Mann, Harmen J. Bussemaker	65
6	Evaluation of methods for modeling transcription factor sequence specificity 2013 ·Nature Biotechnology ·Matthew T. Weirauch, Atina G. Coté, Raquel Norel, Matti Annala, Yue Zhao, Todd Riley, Julio Sáez-Rodríguez, Thomas Cokelaer, Anastasia Vedenko, Shaheynoor Talukder, Harmen J. Bussemaker, Quaid Morris, Martha L. Bulyk, Gustavo Stolovitzky, Timothy R. Hughes	264
7	Probing DNA shape and methylation state on a genomic scale with DNase I 2013 ·Proceedings of the National Academy of Sciences ·Allan Lazarovici, Tianyin Zhou, Anthony Shafer, Ana Carolina Dantas Machado, Todd Riley, Richard Sandstrom, Peter J. Sabo, Yan Lü, Remo Rohs, J Stamatoyannopoulos, Harmen J. Bussemaker	119
8	TLS/FUS (translocated in liposarcoma/fused in sarcoma) regulates target gene transcription via single-stranded DNA response elements 2012 ·Proceedings of the National Academy of Sciences ·(unknown), Todd Riley, Tristan H. Coady, Harmen J. Bussemaker, James L. Manley	98
9	Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins 2011 ·Cell ·Matthew Slattery, Todd Riley, Peng Liu, Namiko Abe, (unknown), Iris Dror, Tianyin Zhou, Remo Rohs, Barry Honig, Harmen J. Bussemaker, Richard S. Mann	380
10	The regulation of the endosomal compartment by p53 the tumor suppressor gene 2009 ·FEBS Journal ·Xin Yu, Todd Riley, Arnold J. Levine	103
11	The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes 2009 ·BMC Bioinformatics ·Todd Riley, Xin Yu, Eduardo D. Sontag, Arnold J. Levine	11
12	Transcriptional control of human p53-regulated genes breakdown → 2008 ·Nature Reviews Molecular Cell Biology ·Todd Riley, Eduardo D. Sontag, Patricia Chen, Arnold J. Levine	1507
13	Population expansion, clonal growth, and specific differentiation patterns in primary cultures of hepatocytes induced by HGF/SF, EGF and TGF alpha in a chemically defined (HGM) medium. 1996 ·The Journal of Cell Biology ·Geoffrey D. Block, Joseph Locker, William C. Bowen, Bryon E. Petersen, S. L. Katyal, Stephen C. Strom, Todd Riley, Tamara Howard, George K. Michalopoulos	390

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact