Pedro Mendes

23.4k total citations · 6 hit papers
113 papers, 11.4k citations indexed

About

Pedro Mendes is a scholar working on Molecular Biology, Biomedical Engineering and Hematology. According to data from OpenAlex, Pedro Mendes has authored 113 papers receiving a total of 11.4k indexed citations (citations by other indexed papers that have themselves been cited), including 93 papers in Molecular Biology, 8 papers in Biomedical Engineering and 7 papers in Hematology. Recurrent topics in Pedro Mendes's work include Microbial Metabolic Engineering and Bioproduction (57 papers), Gene Regulatory Network Analysis (42 papers) and Bioinformatics and Genomic Networks (32 papers). Pedro Mendes is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (57 papers), Gene Regulatory Network Analysis (42 papers) and Bioinformatics and Genomic Networks (32 papers). Pedro Mendes collaborates with scholars based in United States, United Kingdom and Germany. Pedro Mendes's co-authors include Lloyd W. Sumner, Douglas B. Kell, Richard A. Dixon, Julio R. Banga, Alberto de la Fuente, Stefan Hoops, Ursula Kummer, Sven Sahle, Jürgen Pahle and Ralph Gauges and has published in prestigious journals such as Nucleic Acids Research, Environmental Science & Technology and Nature Biotechnology.

In The Last Decade

Pedro Mendes

113 papers receiving 11.0k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

COPASI—a COmplex PAthway SImulator

2006 1.8k citations Stefan Hoops, Pedro Mendes et al. profile →
Plant metabolomics: large-scale phytochemistry in the functional genomics era

2003 754 citations Lloyd W. Sumner, Pedro Mendes et al. profile →
ChEBI in 2016: Improved services and an expanding collection of metabolites

2015 648 citations Janna Hastings, Gareth Owen et al. Nucleic Acids Research profile →
Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods

2003 615 citations Pedro Mendes et al. profile →
Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation.

1998 528 citations Pedro Mendes et al. profile →
Potential of metabolomics as a functional genomics tool

2004 507 citations Pedro Mendes, Lloyd W. Sumner et al. profile →

Peers

Countries citing papers authored by Pedro Mendes

Since Specialization

Citations

This map shows the geographic impact of Pedro Mendes's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Pedro Mendes with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Pedro Mendes more than expected).

Fields of papers citing papers by Pedro Mendes

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Pedro Mendes. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Pedro Mendes. The network helps show where Pedro Mendes may publish in the future.

Co-authorship network of co-authors of Pedro Mendes

This figure shows the co-authorship network connecting the top 25 collaborators of Pedro Mendes. A scholar is included among the top collaborators of Pedro Mendes based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Pedro Mendes. Pedro Mendes is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Corrected and Republished from: “Understanding Lactobacillus paracasei and Streptococcus oralis Biofilm Interactions through Agent-Based Modeling” 2023 ·mSphere ·Linda Archambault, (unknown), Angela Thompson, Anna Dongari‐Bagtzoglou, Reinhard Laubenbacher, Pedro Mendes	2
2	Understanding Lactobacillus paracasei and Streptococcus oralis Biofilm Interactions through Agent-Based Modeling 2021 ·mSphere ·Linda Archambault, (unknown), Angela Thompson, Anna Dongari‐Bagtzoglou, Reinhard Laubenbacher, Pedro Mendes	7
3	Agent Based Models of Polymicrobial Biofilms and the Microbiome—A Review 2021 ·Microorganisms ·(unknown), Linda Archambault, (unknown), Reinhard Laubenbacher, Pedro Mendes, Anna Dongari‐Bagtzoglou	18
4	An important role for periplasmic storage in Pseudomonas aeruginosa copper homeostasis revealed by a combined experimental and computational modeling study 2018 ·Molecular Microbiology ·Jignesh H. Parmar, Julia Quintana, David Ramírez, Reinhard Laubenbacher, José Argüello, Pedro Mendes	13
5	Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli 2017 ·PLoS Computational Biology ·Pierre Millard, Kieran Smallbone, Pedro Mendes	80
6	COMODI: an ontology to characterise differences in versions of computational models in biology 2016 ·Journal of Biomedical Semantics ·(unknown), Dagmar Waltemath, Pedro Mendes, Olaf Wolkenhauer	8
7	ChEBI in 2016: Improved services and an expanding collection of metabolites breakdown → 2015 ·Nucleic Acids Research ·Janna Hastings, Gareth Owen, Adriano Dekker, Marcus Ennis, Namrata Kale, Venkatesh Muthukrishnan, Steve Turner, Neil Swainston, Pedro Mendes, Christoph Steinbeck	648
8	Impact of kinetic isotope effects in isotopic studies of metabolic systems 2015 ·BMC Systems Biology ·Pierre Millard, Jean‐Charles Portais, Pedro Mendes	24
9	Large-Scale Metabolic Models: From Reconstruction to Differential Equations 2013 ·Industrial Biotechnology ·Kieran Smallbone, Pedro Mendes	46
10	Elevating vitamin C content via overexpression of myo-inositol oxygenase and l-gulono-1,4-lactone oxidase in Arabidopsis leads to enhanced biomass and tolerance to abiotic stresses 2013 ·In Vitro Cellular & Developmental Biology - Plant ·(unknown), (unknown), (unknown), (unknown), Martha Vaughan, (unknown), Boris I. Chevone, Pedro Mendes, Craig L. Nessler, Argelia Lorence	58
11	Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network 2012 ·BMC Systems Biology ·Ben Heavner, Kieran Smallbone, (unknown), Pedro Mendes, Larry P. Walker	103
12	Condor-COPASI: high-throughput computing for biochemical networks 2012 ·BMC Systems Biology ·(unknown), Stefan Hoops, Pedro Mendes	30
13	A general map of iron metabolism and tissue-specific subnetworks 2009 ·Molecular BioSystems ·(unknown), Pedro Mendes, Frank M. Torti, Reinhard Laubenbacher, Steven A. Akman, (unknown), Suzy V. Torti	72
14	Challenges for modeling and simulation methods in systems biology 2006 ·Winter Simulation Conference ·Herbert M. Sauro, David Harel, Adelinde M. Uhrmacher, Michael Hucka, Marta Kwiatkowska, Clifford A. Shaffer, Pedro Mendes, Lena Strömbäck, John J. Tyson	13
15	A Two-dimensional Electrophoresis Proteomic Reference Map and Systematic Identification of 1367 Proteins from a Cell Suspension Culture of the Model Legume Medicago truncatula 2005 ·Molecular & Cellular Proteomics ·Zhentian Lei, (unknown), Bonnie S. Watson, Richard A. Dixon, Pedro Mendes, Lloyd W. Sumner	90
16	Minimum information requested in the annotation of biochemical models (MIRIAM) 2005 ·Nature Biotechnology ·Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S. Bhalla, Fabien Campagne, Julio Collado‐Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, (unknown), Herbert M. Sauro, Bruce E. Shapiro, Jacky L. Snoep, (unknown), Barry L. Wanner	390
17	Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula 2004 ·Planta ·Hideyuki Suzuki, M. S. Srinivasa Reddy, Marina Naoumkina, Naveed Aziz, Gregory D. May, David V. Huhman, Lloyd W. Sumner, Jack W. Blount, Pedro Mendes, Richard A. Dixon	160
18	Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism 2004 ·Journal of Experimental Botany ·Corey D. Broeckling, David V. Huhman, Mohamed A. Farag, Joel T. Smith, Gregory D. May, Pedro Mendes, Richard A. Dixon, Lloyd W. Sumner	291
19	Gene networks: how to put the function in genomics 2002 ·Trends in biotechnology ·Paul Brazhnik, Alberto de la Fuente, Pedro Mendes	182
20	Teaching metabolic control analysis and kinetic modelling. 1999 ·The Biochemist ·Jacky L. Snoep, Pedro Mendes, Hans V. Westerhoff	2

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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