Shuangbin Xu

16.6k total citations · 7 hit papers
30 papers, 9.1k citations indexed

About

Shuangbin Xu is a scholar working on Molecular Biology, Genetics and Ecological Modeling. According to data from OpenAlex, Shuangbin Xu has authored 30 papers receiving a total of 9.1k indexed citations (citations by other indexed papers that have themselves been cited), including 23 papers in Molecular Biology, 7 papers in Genetics and 3 papers in Ecological Modeling. Recurrent topics in Shuangbin Xu's work include Genomics and Phylogenetic Studies (8 papers), Gut microbiota and health (7 papers) and Bioinformatics and Genomic Networks (6 papers). Shuangbin Xu is often cited by papers focused on Genomics and Phylogenetic Studies (8 papers), Gut microbiota and health (7 papers) and Bioinformatics and Genomic Networks (6 papers). Shuangbin Xu collaborates with scholars based in China, Hong Kong and United States. Shuangbin Xu's co-authors include Guangchuang Yu, Li Zhan, Meijun Chen, Tingze Feng, Lang Zhou, Zehan Dai, Tianzhi Wu, Wenli Tang, Erqiang Hu and Xiaochen Bo and has published in prestigious journals such as SHILAP Revista de lepidopterología, The Science of The Total Environment and Food Chemistry.

In The Last Decade

Shuangbin Xu

29 papers receiving 9.0k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

clusterProfiler 4.0: A universal enrichment tool for interpreting omics data

2021 7.1k citations Tianzhi Wu, Erqiang Hu et al. The Innovation profile →
Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data

2019 325 citations Tommy Tsan‐Yuk Lam, Shuangbin Xu et al. Molecular Biology and Evolution profile →
Using clusterProfiler to characterize multiomics data

2024 263 citations Shuangbin Xu, Erqiang Hu et al. Nature Protocols profile →
Ggtree : A serialized data object for visualization of a phylogenetic tree and annotation data

2022 182 citations Shuangbin Xu, Lin Li et al. SHILAP Revista de lepidopterología profile →
ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data

2021 177 citations Shuangbin Xu, Zehan Dai et al. Molecular Biology and Evolution profile →
Exploring Epigenomic Datasets by ChIPseeker

2022 172 citations Qianwen Wang, Tianzhi Wu et al. profile →
MicrobiotaProcess: A comprehensive R package for deep mining microbiome

2023 154 citations Shuangbin Xu, Li Zhan et al. The Innovation profile →

Peers

Countries citing papers authored by Shuangbin Xu

Since Specialization

Citations

This map shows the geographic impact of Shuangbin Xu's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shuangbin Xu with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shuangbin Xu more than expected).

Fields of papers citing papers by Shuangbin Xu

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shuangbin Xu. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shuangbin Xu. The network helps show where Shuangbin Xu may publish in the future.

Co-authorship network of co-authors of Shuangbin Xu

This figure shows the co-authorship network connecting the top 25 collaborators of Shuangbin Xu. A scholar is included among the top collaborators of Shuangbin Xu based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Shuangbin Xu. Shuangbin Xu is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	EasyMultiProfiler: an efficient multi-omics data integration and analysis workflow for microbiome research 2025 ·Science China Life Sciences ·(unknown), Yaxi Liu, Shuangbin Xu, Qiusheng Wu, Dan Wu, Li Zhan, Yunfei Liao, Yiu‐Wing Mai, Minghao Zheng, Shui Wang, Yixin Chen, (unknown), Xiao Luo, Zijing Xie, Xiaohan Pan, Guangchuang Yu, Liwei Xie	4
2	aplot: Simplifying the creation of complex graphs to visualize associations across diverse data types 2025 ·The Innovation ·Shuangbin Xu, Qianwen Wang, (unknown), (unknown), (unknown), Ming Li, Thomas Hackl, Rui Wang, Dongqiang Zeng, Shixiang Wang, (unknown), Chunhui Gao, Lang Zhou, (unknown), Zijing Xie, (unknown), Guangchuang Yu	3
3	Preparation and mechanism of Lactobacillus plantarum and curcumin co-encapsulated in alginate-gelatin hydrogel beads 2025 ·Food Chemistry ·(unknown), Fangfang Ni, S. Wu, Xinyu Wang, (unknown), Lantong Zhang, (unknown), Zhijun Song, Gerui Ren, Min Huang, Shuangbin Xu, Qiong Zhang, Khaled F. El‐Massry, Hujun Xie	1
4	Scalable method for exploring phylogenetic placement uncertainty with custom visualizations using treeio and ggtree 2025 ·iMeta ·(unknown), Xiao Luo, Shuangbin Xu, (unknown), (unknown), Zijing Xie, Qianwen Wang, (unknown), Bingdong Liu, (unknown), (unknown), (unknown), Xia Chen, Tommy Tsan‐Yuk Lam, Guangchuang Yu	2
5	Computational modeling for medical data: From data collection to knowledge discovery 2024 ·(unknown), Shuangbin Xu, (unknown), Yantong Cai, Wenli Tang, Jiao Wang, Bairong Shen, Hui Zong, Guangchuang Yu	6
6	Resolving tumor evolution: a phylogenetic approach 2024 ·SHILAP Revista de lepidopterología ·Lin Li, Wenqin Xie, Li Zhan, (unknown), Xiao Luo, Shuangbin Xu, Yantong Cai, Wenli Tang, Qianwen Wang, Ming Li, Zijing Xie, (unknown), (unknown), Guangchuang Yu	1
7	Using clusterProfiler to characterize multiomics data breakdown → 2024 ·Nature Protocols ·Shuangbin Xu, Erqiang Hu, Yantong Cai, Zijing Xie, Xiao Luo, Li Zhan, Wenli Tang, Qianwen Wang, (unknown), Rui Wang, Wenqin Xie, Tianzhi Wu, Liwei Xie, Guangchuang Yu	263
8	shinyTempSignal: an R shiny application for exploring temporal and other phylogenetic signals 2024 ·Journal of genetics and genomics ·Li Zhan, Xiao Luo, Wenqin Xie, (unknown), Zijing Xie, Jianfeng Lin, Lin Li, Wenli Tang, Rui Wang, (unknown), (unknown), Bingdong Liu, Yantong Cai, Qianwen Wang, Shuangbin Xu, Guangchuang Yu	1
9	MicrobiotaProcess: A comprehensive R package for deep mining microbiome breakdown → 2023 ·The Innovation ·Shuangbin Xu, Li Zhan, Wenli Tang, Qianwen Wang, Zehan Dai, Lang Zhou, Tingze Feng, Meijun Chen, Tianzhi Wu, Erqiang Hu, Guangchuang Yu	154
10	Characterization of toxin-antitoxin systems from public sequencing data: A case study in Pseudomonas aeruginosa 2022 ·Frontiers in Microbiology ·Zehan Dai, Tianzhi Wu, Shuangbin Xu, Lang Zhou, Wenli Tang, (unknown), (unknown), Meijun Chen, Guangchuang Yu	3
11	Ggtree : A serialized data object for visualization of a phylogenetic tree and annotation data breakdown → 2022 ·SHILAP Revista de lepidopterología ·Shuangbin Xu, Lin Li, Xiao Luo, Meijun Chen, Wenli Tang, Li Zhan, Zehan Dai, Tommy Tsan‐Yuk Lam, Yi Guan, Guangchuang Yu	182
12	ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data breakdown → 2021 ·Molecular Biology and Evolution ·Shuangbin Xu, Zehan Dai, (unknown), Xiaocong Fu, Shanshan Liu, Lang Zhou, Wenli Tang, Tingze Feng, Meijun Chen, Li Zhan, Tianzhi Wu, Erqiang Hu, Yong Jiang, Xiaochen Bo, Guangchuang Yu	177
13	clusterProfiler 4.0: A universal enrichment tool for interpreting omics data breakdown → 2021 ·The Innovation ·Tianzhi Wu, Erqiang Hu, Shuangbin Xu, Meijun Chen, (unknown), Zehan Dai, Tingze Feng, Lang Zhou, Wenli Tang, Li Zhan, Xiaocong Fu, Shanshan Liu, Xiaochen Bo, Guangchuang Yu	7083
14	Use ggbreak to Effectively Utilize Plotting Space to Deal With Large Datasets and Outliers 2021 ·Frontiers in Genetics ·Shuangbin Xu, Meijun Chen, Tingze Feng, Li Zhan, Lang Zhou, Guangchuang Yu	188
15	Preservation of the fecal samples at ambient temperature for microbiota analysis with a cost-effective and reliable stabilizer EffcGut 2020 ·The Science of The Total Environment ·Luxi Yang, Kejun Hou, Bangzhou Zhang, Cong Ouyang, (unknown), Shuangbin Xu, (unknown), (unknown), Qiongyun Chen, Jingtong Wu, Changsheng Yan, Yifan Lian, Tao Jiang, Jianquan He, Han Wang, Yousi Fu, Chuanxing Xiao, Zhangran Chen	11
16	Featured Gut Microbiomes Associated With the Progression of Chronic Hepatitis B Disease 2020 ·Frontiers in Microbiology ·Zhangran Chen, (unknown), Fei Zhou, Bangzhou Zhang, Jingtong Wu, Luxi Yang, Shuangbin Xu, Robert D. Stedtfeld, Qiongyun Chen, Jingjing Liu, Xiang Zhang, Hongzhi Xu, Jianlin Ren	65
17	Leveraging Fecal Bacterial Survey Data to Predict Colorectal Tumors 2019 ·Frontiers in Genetics ·Bangzhou Zhang, Shuangbin Xu, Wei Xu, Qiongyun Chen, Zhangran Chen, Changsheng Yan, Yanyun Fan, Huangkai Zhang, Qi Liu, Jie Yang, Jinfeng Yang, Chuanxing Xiao, (unknown), Jianlin Ren	13
18	Transcriptome-wide identification and functional investigation of circular RNA in the teleost large yellow croaker (Larimichthys crocea) 2017 ·Marine Genomics ·Shuangbin Xu, Shijun Xiao, (unknown), Zhiyong Wang	25
19	Identification of a male-specific DNA marker in the large yellow croaker (Larimichthys crocea) 2017 ·Aquaculture ·(unknown), Shijun Xiao, Shuangbin Xu, Kun Ye, (unknown), Sha Sun, Zhiyong Wang	64
20	Rapid construction of genome map for large yellow croaker (Larimichthys crocea) by the whole-genome mapping in BioNano Genomics Irys system 2015 ·BMC Genomics ·Shijun Xiao, Jiong-Tang Li, (unknown), (unknown), Shuangbin Xu, Wei Chen, (unknown)	20

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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