Shaun D. Jackman

14.3k citations

32 papers · 4.4k indexed · 2 hit papers · h-index 19

Impact in

Molecular Biology top 2%
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
Ecology top 2%
- Microbial Community Ecology and Physiology
- Bacteriophages and microbial interactions

Papers in

Molecular Biology 26
- Genomics and Phylogenetic Studies 24
- RNA and protein synthesis mechanisms 12
- Molecular Biology Techniques and Applications 4
- RNA modifications and cancer 3
- Advanced biosensing and bioanalysis techniques 2
Ecology 9
- Bacteriophages and microbial interactions 3

Co-authors: İnanç Birol Steven J.M. Jones Jacqueline E. Schein Jared T. Simpson Kim Wong René L. Warren Benjamin P. Vandervalk Justin Chu
Journals: Bioinformatics (3 papers)BMC Bioinformatics (3 papers)PLoS ONE (3 papers)Genome Biology and Evolution (2 papers)BMC Genomics (2 papers)
Partner nations: Canada United States Belgium

In The Last Decade

Shaun D. Jackman

31 papers receiving 4.3k citations

Hit Papers

align trajectories log scale

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter 2017 · 455 citations

Peers

Countries citing papers authored by Shaun D. Jackman

Since Specialization

Citations

This map shows the geographic impact of Shaun D. Jackman's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shaun D. Jackman with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shaun D. Jackman more than expected).

Fields of papers citing papers by Shaun D. Jackman

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shaun D. Jackman. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shaun D. Jackman. The network helps show where Shaun D. Jackman may publish in the future.

Co-authors

The 25 scholars most cited alongside Shaun D. Jackman, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Shaun D. Jackman Line = papers co-authored together Shaun D. Jackman links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure Genome Biology and Evolution ·Shaun D. Jackman, Lauren Coombe, René L. Warren, Heather Kirk, Eva Trinh, Tina MacLeod, Stephen Pleasance, Pawan Pandoh, Yongjun Zhao, Robin Coope, Jean Bousquet, Jöerg Bohlmann, Steven J.M. Jones, İnanç Birol	2020	68
2	ORCA: a comprehensive bioinformatics container environment for education and research Bioinformatics ·Shaun D. Jackman, Tatyana Mozgacheva, Susie Chen, Brendan O’Huiginn, Lance R. Bailey, İnanç Birol, Steven J.M. Jones	2019	8
3	Complete Chloroplast Genome Sequence of an Engelmann Spruce ( Picea engelmannii , Genotype Se404-851) from Western Canada Microbiology Resource Announcements ·Diana Lin, Lauren Coombe, Shaun D. Jackman, Kristina Gagalova, Robin M. Warren, S. Austin Hammond, Helen McDonald, Heather Kirk, Pawan Pandoh, Yongjun Zhao, Richard A. Moore, Andrew J. Mungall, Carol Ritland, Trevor Doerksen, Barry Jaquish, Jean Bousquet, Steven J.M. Jones, Jöerg Bohlmann, İnanç Birol	2019	3
4	ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers BMC Bioinformatics ·Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, İnanç Birol, René L. Warren	2018	53
5	Tigmint: correcting assembly errors using linked reads from large molecules BMC Bioinformatics ·Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jöerg Bohlmann, Steven J.M. Jones, İnanç Birol	2018	73
6	ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter Genome Research ·Shaun D. Jackman, Benjamin P. Vandervalk, Hamid Mohamadi, Justin Chu, Sarah Yeo, S. Austin Hammond, Golnaz Jahesh, Hamza Khan, Lauren Coombe, René L. Warren, İnanç Birol Hit paper breakdown →	2017	455
7	Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data PLoS ONE ·Lauren Coombe, René L. Warren, Shaun D. Jackman, Chen Yang, Benjamin P. Vandervalk, Richard A. Moore, Stephen Pleasance, Robin Coope, Jöerg Bohlmann, Robert A. Holt, Steven J.M. Jones, İnanç Birol	2016	25
8	Linuxbrew and Homebrew for cross-platform package management Faculty of 1000 Research Ltd ·Shaun D. Jackman, İnanç Birol	2016	4
9	On the Representation of De Bruijn Graphs Journal of Computational Biology ·Rayan Chikhi, Antoine Limasset, Shaun D. Jackman, Jared T. Simpson, Paul Medvedev	2015	36
10	Sealer: a scalable gap-closing application for finishing draft genomes BMC Bioinformatics ·Daniel Paulino, René L. Warren, Benjamin P. Vandervalk, Anthony Raymond, Shaun D. Jackman, İnanç Birol	2015	90
11	Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation Genome Biology and Evolution ·Shaun D. Jackman, René L. Warren, Ewan A. Gibb, Benjamin P. Vandervalk, Hamid Mohamadi, Justin Chu, Anthony Raymond, Stephen Pleasance, Robin Coope, Mark R. Wildung, Carol Ritland, Jean Bousquet, Steven J.M. Jones, Jöerg Bohlmann, İnanç Birol	2015	39
12	DIDA: Distributed Indexing Dispatched Alignment PLoS ONE ·Hamid Mohamadi, Benjamin P. Vandervalk, Anthony Raymond, Shaun D. Jackman, Justin Chu, Clay P. Breshears, İnanç Birol	2015	7
13	BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters Bioinformatics ·Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S.N. Butterfield, A. Gordon Robertson, İnanç Birol	2014	62
14	Spaced seed data structures İnanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren	2014	0
15	Whole Genome Duplication and Enrichment of Metal Cation Transporters Revealed by De Novo Genome Sequencing of Extremely Halotolerant Black Yeast Hortaea werneckii PLoS ONE ·Metka Lenassi, Cene Gostinčar, Shaun D. Jackman, Martina Turk, Ivan Sadowski, Corey Nislow, Steven J.M. Jones, İnanç Birol, Nina Cimerman, Ana Plemenitaš	2013	76
16	The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera BMC Genomics ·Sajeet Haridas, Ye Wang, Lynette Lim, Sepideh Massoumi Alamouti, Shaun D. Jackman, Roderick Docking, Gordon Robertson, İnanç Birol, Jörg Bohlmann, Colette Breuil	2013	55
17	Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees BMC Genomics ·Queenie W. T. Chan, Robert S. Cornman, İnanç Birol, Nancy Liao, Simon K. Chan, Roderick Docking, Shaun D. Jackman, Greg Taylor, Steven J.M. Jones, Dirk C. de Graaf, Jay D. Evans, Leonard J. Foster	2011	33
18	Assembling genomes using short-read sequencing technology Genome Biology ·Shaun D. Jackman, İnanç Birol	2010	20
19	ABySS: A parallel assembler for short read sequence data Genome Research ·Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J.M. Jones, İnanç Birol Hit paper breakdown →	2009	2603
20	ABySS-Explorer: Visualizing Genome Sequence Assemblies IEEE Transactions on Visualization and Computer Graphics ·Cydney Nielsen, Shaun D. Jackman, İnanç Birol, Steven J.M. Jones	2009	46

About Shaun D. Jackman

Shaun D. Jackman is a scholar working on Molecular Biology, Ecology, Information Systems and Management, Insect Science and Plant Science, having authored 32 papers that have together received 4.4k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (24 papers), RNA and protein synthesis mechanisms (12 papers), Chromosomal and Genetic Variations (5 papers), Molecular Biology Techniques and Applications (4 papers), Bacteriophages and microbial interactions (3 papers), RNA modifications and cancer (3 papers), Algorithms and Data Compression (3 papers) and Advanced biosensing and bioanalysis techniques (2 papers). The work is most often cited by research in Molecular Biology (2.8k citations), Ecology (983 citations), Insect Science (448 citations), Plant Science (1.3k citations) and Endocrinology (167 citations). Shaun D. Jackman has collaborated with scholars based in Canada, United States and Belgium. Frequent co-authors include İnanç Birol, Steven J.M. Jones, Jacqueline E. Schein, Jared T. Simpson, Kim Wong, René L. Warren, Benjamin P. Vandervalk, Justin Chu, Lauren Coombe and Hamid Mohamadi. Their work appears in journals such as Bioinformatics, BMC Bioinformatics, PLoS ONE, Genome Biology and Evolution and BMC Genomics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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