Lim Heo

14.9k total citations · 4 hit papers
38 papers, 8.3k citations indexed

About

Lim Heo is a scholar working on Molecular Biology, Materials Chemistry and Spectroscopy. According to data from OpenAlex, Lim Heo has authored 38 papers receiving a total of 8.3k indexed citations (citations by other indexed papers that have themselves been cited), including 36 papers in Molecular Biology, 24 papers in Materials Chemistry and 7 papers in Spectroscopy. Recurrent topics in Lim Heo's work include Protein Structure and Dynamics (27 papers), Enzyme Structure and Function (24 papers) and Mass Spectrometry Techniques and Applications (7 papers). Lim Heo is often cited by papers focused on Protein Structure and Dynamics (27 papers), Enzyme Structure and Function (24 papers) and Mass Spectrometry Techniques and Applications (7 papers). Lim Heo collaborates with scholars based in United States, South Korea and Japan. Lim Heo's co-authors include Milot Mirdita, Konstantin Schütze, Yoshitaka Moriwaki, Sergey Ovchinnikov, Martin Steinegger, Chaok Seok, Hahnbeom Park, Michael Feig, Jin Hwan Ko and Hasup Lee and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Lim Heo

38 papers receiving 8.2k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

ColabFold: making protein folding accessible to all

2022 5.0k citations Lim Heo et al. profile →
GalaxyRefine: protein structure refinement driven by side-chain repacking

2013 948 citations Lim Heo, Hahnbeom Park et al. Nucleic Acids Research profile →
GalaxyWEB server for protein structure prediction and refinement

2012 673 citations Hahnbeom Park, Lim Heo et al. Nucleic Acids Research profile →
Multi‐state modeling of G‐protein coupled receptors at experimental accuracy

2022 124 citations Lim Heo, Michael Feig Proteins Structure Function and Bioinformatics profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Lim Heo United States	23	6.1k	899	773	755	712	38	8.3k
Ben Webb United States	12	6.9k 1.1×	1.1k 1.2×	689 0.9×	746 1.0×	503 0.7×	13	9.5k
M. S. Madhusudhan India	28	6.6k 1.1×	1.1k 1.3×	774 1.0×	687 0.9×	380 0.5×	67	9.2k
David Eramian United States	7	6.0k 1.0×	818 0.9×	674 0.9×	696 0.9×	385 0.5×	8	8.3k
Rosalba Lepore Italy	15	5.7k 0.9×	514 0.6×	777 1.0×	954 1.3×	521 0.7×	27	9.3k
Narayanan Eswar United States	25	8.4k 1.4×	1.3k 1.4×	802 1.0×	775 1.0×	545 0.8×	52	11.2k
Rafal Gumienny Switzerland	10	6.2k 1.0×	586 0.7×	745 1.0×	996 1.3×	546 0.8×	10	9.9k
Gerardo Tauriello Switzerland	15	6.4k 1.1×	600 0.7×	778 1.0×	1.1k 1.4×	600 0.8×	22	10.5k
Sergey Ovchinnikov United States	31	7.9k 1.3×	1.5k 1.7×	519 0.7×	462 0.6×	751 1.1×	71	10.6k
Tjaart de Beer United Kingdom	14	6.5k 1.1×	621 0.7×	799 1.0×	1.1k 1.4×	582 0.8×	25	10.7k
Min‐Yi Shen United States	14	7.6k 1.2×	1.3k 1.5×	782 1.0×	827 1.1×	443 0.6×	20	10.4k

Countries citing papers authored by Lim Heo

Since Specialization

Citations

This map shows the geographic impact of Lim Heo's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Lim Heo with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Lim Heo more than expected).

Fields of papers citing papers by Lim Heo

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Lim Heo. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Lim Heo. The network helps show where Lim Heo may publish in the future.

Co-authorship network of co-authors of Lim Heo

This figure shows the co-authorship network connecting the top 25 collaborators of Lim Heo. A scholar is included among the top collaborators of Lim Heo based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Lim Heo. Lim Heo is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Janson, Giacomo, et al.. (2023). Direct generation of protein conformational ensembles via machine learning. Nature Communications. 14(1). 774–774. 96 indexed citations

Heo, Lim & Michael Feig. (2023). One bead per residue can describe all-atom protein structures. Structure. 32(1). 97–111.e6. 24 indexed citations

Heo, Lim, et al.. (2022). Inhibitory proteins block substrate access by occupying the active site cleft of Bacillus subtilis intramembrane protease SpoIVFB. eLife. 11. 7 indexed citations

Heo, Lim, Yuji Sugita, & Michael Feig. (2022). Protein assembly and crowding simulations. Current Opinion in Structural Biology. 73. 102340–102340. 26 indexed citations

Heo, Lim, et al.. (2021). Improved Sampling Strategies for Protein Model Refinement Based on Molecular Dynamics Simulation. Journal of Chemical Theory and Computation. 17(3). 1931–1943. 16 indexed citations

Heo, Lim, Giacomo Janson, & Michael Feig. (2021). Physics‐based protein structure refinement in the era of artificial intelligence. Proteins Structure Function and Bioinformatics. 89(12). 1870–1887. 16 indexed citations

Baek, Minkyung, Taeyong Park, Lim Heo, & Chaok Seok. (2020). Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server. Methods in molecular biology. 2165. 127–137. 4 indexed citations

Heo, Lim & Michael Feig. (2018). Experimental accuracy in protein structure refinement via molecular dynamics simulations. Proceedings of the National Academy of Sciences. 115(52). 13276–13281. 60 indexed citations

Feig, Michael & Lim Heo. (2018). Protein Structure Refinement via Molecular Dynamics Simulations. Biophysical Journal. 114(3). 575a–575a. 3 indexed citations

10.

Lensink, Marc F., Sameer Velankar, Minkyung Baek, et al.. (2017). The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment. Proteins Structure Function and Bioinformatics. 86(S1). 257–273. 80 indexed citations

11.

Baek, Minkyung, Taeyong Park, Lim Heo, Chiwook Park, & Chaok Seok. (2017). GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure. Nucleic Acids Research. 45(W1). W320–W324. 93 indexed citations

12.

Heo, Lim & Michael Feig. (2017). PREFMD: a web server for protein structure refinement via molecular dynamics simulations. Bioinformatics. 34(6). 1063–1065. 31 indexed citations

13.

Heo, Lim, Hasup Lee, Minkyung Baek, & Chaok Seok. (2016). Binding Site Prediction of Proteins with Organic Compounds or Peptides Using GALAXY Web Servers. Methods in molecular biology. 1414. 33–45. 6 indexed citations

14.

Singh, Atul K., et al.. (2015). Factors affecting redox potential and differential sensitivity ofSoxRto redox‐active compounds. Molecular Microbiology. 97(5). 808–821. 17 indexed citations

15.

Lee, Gyu Rie, Lim Heo, & Chaok Seok. (2015). Effective protein model structure refinement by loop modeling and overall relaxation. Proteins Structure Function and Bioinformatics. 84(S1). 293–301. 96 indexed citations

16.

Lee, Hasup, Lim Heo, Myeong Sup Lee, & Chaok Seok. (2015). GalaxyPepDock: a protein–peptide docking tool based on interaction similarity and energy optimization. Nucleic Acids Research. 43(W1). W431–W435. 229 indexed citations

17.

Park, Hahnbeom, Gyu Rie Lee, Lim Heo, & Chaok Seok. (2014). Protein Loop Modeling Using a New Hybrid Energy Function and Its Application to Modeling in Inaccurate Structural Environments. PLoS ONE. 9(11). e113811–e113811. 70 indexed citations

18.

Heo, Lim, Hahnbeom Park, & Chaok Seok. (2013). GalaxyRefine: protein structure refinement driven by side-chain repacking. Nucleic Acids Research. 41(W1). W384–W388. 948 indexed citations breakdown →

19.

Heo, Lim, et al.. (2013). Alternative zinc‐binding sites explain the redox sensitivity of zinc‐containing anti‐sigma factors. Proteins Structure Function and Bioinformatics. 81(9). 1644–1652. 6 indexed citations

20.

Shin, Woong‐Hee, Lim Heo, Juyong Lee, et al.. (2011). LigDockCSA: Protein–ligand docking using conformational space annealing. Journal of Computational Chemistry. 32(15). 3226–3232. 35 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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