Pemra Doruker

3.8k total citations
76 papers, 2.7k citations indexed

About

Pemra Doruker is a scholar working on Molecular Biology, Materials Chemistry and Spectroscopy. According to data from OpenAlex, Pemra Doruker has authored 76 papers receiving a total of 2.7k indexed citations (citations by other indexed papers that have themselves been cited), including 59 papers in Molecular Biology, 33 papers in Materials Chemistry and 17 papers in Spectroscopy. Recurrent topics in Pemra Doruker's work include Protein Structure and Dynamics (48 papers), Enzyme Structure and Function (20 papers) and Mass Spectrometry Techniques and Applications (10 papers). Pemra Doruker is often cited by papers focused on Protein Structure and Dynamics (48 papers), Enzyme Structure and Function (20 papers) and Mass Spectrometry Techniques and Applications (10 papers). Pemra Doruker collaborates with scholars based in Türkiye, United States and France. Pemra Doruker's co-authors include İvet Bahar, Wayne L. Mattice, Ali Rana Atılgan, Robert L. Jernigan, Özge Kürkçüoğlu, Esra Kücükpinar, Burak Kaynak, Zeynep Kurkcuoglu, Ebru Demet Akten and James Krieger and has published in prestigious journals such as The Journal of Chemical Physics, Bioinformatics and PLoS ONE.

In The Last Decade

Pemra Doruker

76 papers receiving 2.7k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Pemra Doruker Türkiye 31 1.8k 1.0k 308 299 254 76 2.7k
Andrzej Kloczkowski United States 29 1.7k 0.9× 833 0.8× 404 1.3× 176 0.6× 228 0.9× 186 3.0k
Paulo C. T. Souza Netherlands 28 2.1k 1.1× 546 0.5× 268 0.9× 293 1.0× 409 1.6× 75 3.4k
Cameron F. Abrams United States 28 1.1k 0.6× 937 0.9× 382 1.2× 431 1.4× 351 1.4× 132 2.9k
Takeshi Ishikawa Japan 30 876 0.5× 621 0.6× 244 0.8× 510 1.7× 258 1.0× 167 3.0k
Elizabeth J. Denning United States 12 2.7k 1.5× 630 0.6× 63 0.2× 427 1.4× 340 1.3× 15 3.7k
Christopher B. Stanley United States 28 2.0k 1.1× 499 0.5× 218 0.7× 268 0.9× 316 1.2× 87 3.1k
Jianhan Chen United States 36 2.9k 1.6× 1.3k 1.3× 97 0.3× 411 1.4× 612 2.4× 119 4.4k
Naveen Michaud‐Agrawal United States 4 1.7k 0.9× 438 0.4× 61 0.2× 329 1.1× 253 1.0× 4 2.7k
Jonathan Barnoud Netherlands 20 1.4k 0.8× 480 0.5× 80 0.3× 263 0.9× 318 1.3× 34 2.5k
Jochen Balbach Germany 33 2.6k 1.4× 989 1.0× 112 0.4× 169 0.6× 82 0.3× 127 3.4k

Countries citing papers authored by Pemra Doruker

Since Specialization
Citations

This map shows the geographic impact of Pemra Doruker's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Pemra Doruker with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Pemra Doruker more than expected).

Fields of papers citing papers by Pemra Doruker

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Pemra Doruker. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Pemra Doruker. The network helps show where Pemra Doruker may publish in the future.

Co-authorship network of co-authors of Pemra Doruker

This figure shows the co-authorship network connecting the top 25 collaborators of Pemra Doruker. A scholar is included among the top collaborators of Pemra Doruker based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Pemra Doruker. Pemra Doruker is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Banerjee, Anupam, Mohsin M. Naqvi, Maria Zacharopoulou, et al.. (2024). Influence of point mutations on PR65 conformational adaptability: Insights from molecular simulations and nanoaperture optical tweezers. Science Advances. 10(22). eadn2208–eadn2208. 5 indexed citations
2.
Kumar, Ambuj, Burak Kaynak, Karin S. Dorman, Pemra Doruker, & Robert L. Jernigan. (2023). Predicting allosteric pockets in protein biological assemblages. Bioinformatics. 39(5). 15 indexed citations
3.
Kaynak, Burak, Pemra Doruker, Anupam Banerjee, et al.. (2023). Cooperative mechanics of PR65 scaffold underlies the allosteric regulation of the phosphatase PP2A. Structure. 31(5). 607–618.e3. 8 indexed citations
4.
Kaynak, Burak, James Krieger, Maurício G. S. Costa, et al.. (2022). Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods. Frontiers in Molecular Biosciences. 9. 832847–832847. 21 indexed citations
5.
Doruker, Pemra, et al.. (2022). Activation and Speciation Mechanisms in Class A GPCRs. Journal of Molecular Biology. 434(17). 167690–167690. 3 indexed citations
6.
Huang, Yunhong, Ji Young Lee, Pemra Doruker, et al.. (2022). GPCR kinases generate an APH1A phosphorylation barcode to regulate amyloid-β generation. Cell Reports. 40(3). 111110–111110. 4 indexed citations
7.
Kaynak, Burak, She Zhang, İvet Bahar, & Pemra Doruker. (2021). ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution. Bioinformatics. 37(21). 3956–3958. 16 indexed citations
8.
Sutkevičiu̅tė, Ieva, Ji Young Lee, Alex D. White, et al.. (2021). Precise druggability of the PTH type 1 receptor. Nature Chemical Biology. 18(3). 272–280. 21 indexed citations
9.
Clark, Lisa J., James Krieger, Alex D. White, et al.. (2020). Allosteric interactions in the parathyroid hormone GPCR–arrestin complex formation. Nature Chemical Biology. 16(10). 1096–1104. 39 indexed citations
10.
Zhang, Yan, Pemra Doruker, Burak Kaynak, et al.. (2019). Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior. Current Opinion in Structural Biology. 62. 14–21. 79 indexed citations
11.
Kurkcuoglu, Zeynep, et al.. (2015). How an Inhibitor Bound to Subunit Interface Alters Triosephosphate Isomerase Dynamics. Biophysical Journal. 109(6). 1169–1178. 25 indexed citations
12.
Doruker, Pemra, et al.. (2013). Effect of intracellular loop 3 on intrinsic dynamics of human β2-adrenergic receptor. BMC Structural Biology. 13(1). 29–29. 30 indexed citations
13.
Nilsson, Lennart, et al.. (2011). The elastic network model reveals a consistent picture on intrinsic functional dynamics of type II restriction endonucleases. Physical Biology. 8(5). 56001–56001. 9 indexed citations
14.
Kurkcuoglu, Zeynep, et al.. (2011). Blind Dockings of Benzothiazoles to Multiple Receptor Conformations of Triosephosphate Isomerase from Trypanosoma cruzi and Human. Molecular Informatics. 30(11-12). 986–995. 11 indexed citations
15.
Kürkçüoğlu, Özge, Pemra Doruker, Taner Z. Sen, Andrzej Kloczkowski, & Robert L. Jernigan. (2008). The ribosome structure controls and directs mRNA entry, translocation and exit dynamics. Physical Biology. 5(4). 46005–46005. 55 indexed citations
16.
Doruker, Pemra, et al.. (2006). Cooperative Fluctuations Point to the Dimerization Interface of P53 Core Domain. Biophysical Journal. 91(2). 421–432. 11 indexed citations
17.
Doruker, Pemra, Lennart Nilsson, & Özge Kürkçüoğlu. (2006). Collective Dynamics ofEcoRI-DNA Complex by Elastic Network Model and Molecular Dynamics Simulations. Journal of Biomolecular Structure and Dynamics. 24(1). 1–15. 30 indexed citations
18.
Kürkçüoğlu, Özge, Robert L. Jernigan, & Pemra Doruker. (2005). Loop Motions of Triosephosphate Isomerase Observed with Elastic Networks. Biochemistry. 45(4). 1173–1182. 47 indexed citations
19.
Isin, Basak, Pemra Doruker, & İvet Bahar. (2002). Functional Motions of Influenza Virus Hemagglutinin: A Structure-Based Analytical Approach. Biophysical Journal. 82(2). 569–581. 65 indexed citations
20.
Doruker, Pemra, Ali Rana Atılgan, & İvet Bahar. (2000). Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: Application to α‐amylase inhibitor. Proteins Structure Function and Bioinformatics. 40(3). 512–524. 8 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact

Breakdown of academic impact, for papers by Andrzej Kloczkowski Breakdown of academic impact, for papers by Paulo C. T. Souza Breakdown of academic impact, for papers by Cameron F. Abrams Breakdown of academic impact, for papers by Takeshi Ishikawa Breakdown of academic impact, for papers by Elizabeth J. Denning Breakdown of academic impact, for papers by Christopher B. Stanley Breakdown of academic impact, for papers by Jianhan Chen Breakdown of academic impact, for papers by Naveen Michaud‐Agrawal Breakdown of academic impact, for papers by Jonathan Barnoud Breakdown of academic impact, for papers by Jochen Balbach
Rankless by CCL
2026