Orly Alter

3.9k total citations · 1 hit paper
34 papers, 2.7k citations indexed

About

Orly Alter is a scholar working on Molecular Biology, Artificial Intelligence and Atomic and Molecular Physics, and Optics. According to data from OpenAlex, Orly Alter has authored 34 papers receiving a total of 2.7k indexed citations (citations by other indexed papers that have themselves been cited), including 16 papers in Molecular Biology, 8 papers in Artificial Intelligence and 7 papers in Atomic and Molecular Physics, and Optics. Recurrent topics in Orly Alter's work include Gene expression and cancer classification (12 papers), Genomics and Chromatin Dynamics (9 papers) and Gene Regulatory Network Analysis (8 papers). Orly Alter is often cited by papers focused on Gene expression and cancer classification (12 papers), Genomics and Chromatin Dynamics (9 papers) and Gene Regulatory Network Analysis (8 papers). Orly Alter collaborates with scholars based in United States, China and Poland. Orly Alter's co-authors include Patrick O. Brown, David Botstein, Gene H. Golub, Larsson Omberg, Torsten O. Nielsen, Matt van de Rijn, Robert B. West, Margaret A. Knowling, Sabine C. Linn and Mike Fero and has published in prestigious journals such as Proceedings of the National Academy of Sciences, The Lancet and Physical Review Letters.

In The Last Decade

Orly Alter

34 papers receiving 2.6k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Singular value decomposition for genome-wide expression data processing and modeling

2000 1.4k citations Orly Alter, Patrick O. Brown et al. Proceedings of the National Academy of Sciences profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Orly Alter United States	15	1.7k	353	303	250	188	34	2.7k
Jean-Philippe Brunet France	8	796 0.5×	154 0.4×	128 0.4×	126 0.5×	242 1.3×	19	1.6k
Alberto Pascual-Montano Spain	30	3.7k 2.2×	206 0.6×	160 0.5×	425 1.7×	1.6k 8.6×	49	5.2k
Ker-Chau Li United States	25	852 0.5×	991 2.8×	401 1.3×	274 1.1×	249 1.3×	74	4.9k
Xiaofei Zhang China	41	463 0.3×	256 0.7×	111 0.4×	42 0.2×	180 1.0×	434	6.6k
Xianghong Jasmine Zhou United States	35	3.7k 2.3×	230 0.7×	211 0.7×	424 1.7×	1.1k 5.9×	88	4.7k
Guido Sanguinetti United Kingdom	37	2.6k 1.5×	488 1.4×	72 0.2×	560 2.2×	355 1.9×	135	4.2k
Ao Li China	32	2.0k 1.2×	751 2.1×	126 0.4×	226 0.9×	823 4.4×	148	3.3k
J. Sunil Rao United States	20	497 0.3×	335 0.9×	107 0.4×	165 0.7×	88 0.5×	77	1.9k
Ping Tang China	36	674 0.4×	443 1.3×	311 1.0×	192 0.8×	623 3.3×	223	4.5k
Ivan G. Costa Germany	39	3.0k 1.8×	634 1.8×	207 0.7×	327 1.3×	672 3.6×	124	4.9k

Countries citing papers authored by Orly Alter

Since Specialization

Citations

This map shows the geographic impact of Orly Alter's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Orly Alter with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Orly Alter more than expected).

Fields of papers citing papers by Orly Alter

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Orly Alter. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Orly Alter. The network helps show where Orly Alter may publish in the future.

Co-authorship network of co-authors of Orly Alter

This figure shows the co-authorship network connecting the top 25 collaborators of Orly Alter. A scholar is included among the top collaborators of Orly Alter based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Orly Alter. Orly Alter is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Alter, Orly, Jessica W. Tsai, Penelope Miron, et al.. (2024). Prospective validation from a retrospective trial that validated an AI/ML-derived whole-genome biomarker as the most accurate and precise predictor of survival and response to treatment in glioblastoma.. Journal of Clinical Oncology. 42(16_suppl). e14028–e14028. 1 indexed citations

Alter, Orly, et al.. (2024). AI/ML-derived mechanistically interpretable whole-genome biomarkers of patient survival in pre-treatment primary neuroblastoma tumors and whole blood.. Journal of Clinical Oncology. 42(16_suppl). 10043–10043. 2 indexed citations

Miron, Penelope, Kristy Miskimen, Kristin Waite, et al.. (2023). AI/ML-Derived Whole-Genome Predictor Prospectively and Clinically Predicts Survival and Response to Treatment in Brain Cancer. 117–118. 1 indexed citations

Devine, Karen, Jay Bowen, Sara E. Coppens, et al.. (2020). Retrospective clinical trial experimentally validates glioblastoma genome-wide pattern of DNA copy-number alterations predictor of survival. APL Bioengineering. 4(2). 26106–26106. 3 indexed citations

Alter, Orly, et al.. (2016). Platform-Independent Genome-Wide Pattern of DNA Copy-Number Alterations Predicting Astrocytoma Survival and Response to Treatment Revealed by the GSVD Formulated as a Comparative Spectral Decomposition. PLoS ONE. 11(10). e0164546–e0164546. 8 indexed citations

Alter, Orly, et al.. (2015). Tensor GSVD of Patient- and Platform-Matched Tumor and Normal DNA Copy-Number Profiles Uncovers Chromosome Arm-Wide Patterns of Tumor-Exclusive Platform-Consistent Alterations Encoding for Cell Transformation and Predicting Ovarian Cancer Survival. PLoS ONE. 10(4). e0121396–e0121396. 35 indexed citations

Tennessen, Jason M., et al.. (2013). SVD Identifies Transcript Length Distribution Functions from DNA Microarray Data and Reveals Evolutionary Forces Globally Affecting GBM Metabolism. PLoS ONE. 8(11). e78913–e78913. 14 indexed citations

Lee, Cheng H., et al.. (2012). GSVD Comparison of Patient-Matched Normal and Tumor aCGH Profiles Reveals Global Copy-Number Alterations Predicting Glioblastoma Multiforme Survival. PLoS ONE. 7(1). e30098–e30098. 30 indexed citations

Saunders, Michael A., et al.. (2011). A Higher-Order Generalized Singular Value Decomposition for Comparison of Global mRNA Expression from Multiple Organisms. PLoS ONE. 6(12). e28072–e28072. 69 indexed citations

10.

Gross, Andrew M., et al.. (2011). Tensor Decomposition Reveals Concurrent Evolutionary Convergences and Divergences and Correlations with Structural Motifs in Ribosomal RNA. PLoS ONE. 6(4). e18768–e18768. 6 indexed citations

11.

Alter, Orly. (2007). Genomic Signal Processing: From Matrix Algebra to Genetic Networks. Methods in molecular biology. 377. 17–59. 14 indexed citations

12.

Alter, Orly & Gene H. Golub. (2004). Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription. Proceedings of the National Academy of Sciences. 101(47). 16577–16582. 56 indexed citations

13.

Alter, Orly, Y. Yamamoto, & L. E. Ballentine. (2003). Quantum Measurement of a Single System. American Journal of Physics. 71(6). 639–640. 4 indexed citations

14.

Nielsen, Torsten O., Robert B. West, Sabine C. Linn, et al.. (2002). Molecular characterisation of soft tissue tumours: a gene expression study. The Lancet. 359(9314). 1301–1307. 444 indexed citations

15.

Alter, Orly, Patrick O. Brown, & David Botstein. (2001). Singular Value Decomposition for Genome-Wide Expression Data Processing and Modeling. PubMed Central. 1 indexed citations

16.

Alter, Orly & Y. Yamamoto. (2001). Quantum Measurement of a Single System. 13 indexed citations

17.

Alter, Orly, Patrick O. Brown, & David Botstein. (2001). <title>Processing and modeling genome-wide expression data using singular value decomposition</title>. Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE. 4266. 171–186. 32 indexed citations

18.

Alter, Orly, Patrick O. Brown, & David Botstein. (2000). Singular value decomposition for genome-wide expression data processing and modeling. Proceedings of the National Academy of Sciences. 97(18). 10101–10106. 1399 indexed citations breakdown →

19.

Alter, Orly, et al.. (1998). Impossibility of Determining the Unknown Quantum Wavefunction of a Single System: Quantum Non-Demolition Measurements, Measurements without Entanglement and Adiabatic Measurements. Fortschritte der Physik. 46(6-8). 817–827. 2 indexed citations

20.

Alter, Orly & Y. Yamamoto. (1997). Quantum Zeno effect and the impossibility of determining the quantum state of a single system. Physical Review A. 55(4). R2499–R2502. 12 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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