Nicole T. Perna

29.5k total citations · 6 hit papers
60 papers, 19.9k citations indexed

About

Nicole T. Perna is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, Nicole T. Perna has authored 60 papers receiving a total of 19.9k indexed citations (citations by other indexed papers that have themselves been cited), including 26 papers in Molecular Biology, 25 papers in Genetics and 23 papers in Plant Science. Recurrent topics in Nicole T. Perna's work include Genomics and Phylogenetic Studies (17 papers), Escherichia coli research studies (15 papers) and Plant Pathogenic Bacteria Studies (14 papers). Nicole T. Perna is often cited by papers focused on Genomics and Phylogenetic Studies (17 papers), Escherichia coli research studies (15 papers) and Plant Pathogenic Bacteria Studies (14 papers). Nicole T. Perna collaborates with scholars based in United States, France and United Kingdom. Nicole T. Perna's co-authors include Bob Mau, Aaron E. Darling, Frederick R. Blattner, Thomas D. Kocher, Thomas Köcher, Jeremy D. Glasner, Valerie Burland, George F. Mayhew, Guy Plunkett and Christopher K. Rode and has published in prestigious journals such as Science, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

In The Last Decade

Nicole T. Perna

60 papers receiving 19.5k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The Complete Genome Sequence of Escherichia coli K-12

1997 5.9k citations Frederick R. Blattner, Guy Plunkett et al. profile →
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

2004 3.6k citations Aaron E. Darling, Bob Mau et al. Genome Research profile →
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

2010 3.0k citations Aaron E. Darling, Bob Mau et al. PLoS ONE profile →
Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

1995 1.2k citations Nicole T. Perna et al. profile →
Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

1995 1.2k citations Nicole T. Perna, Thomas D. Kocher profile →
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli

2002 1.1k citations Rodney A. Welch, Valerie Burland et al. Proceedings of the National Academy of Sciences profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Nicole T. Perna United States	34	11.7k	5.2k	4.6k	3.8k	3.4k	60	19.9k
Howard Ochman United States	68	12.7k 1.1×	5.8k 1.1×	5.6k 1.2×	3.6k 1.0×	4.0k 1.2×	159	22.6k
Paul Keim United States	86	9.0k 0.8×	6.8k 1.3×	4.7k 1.0×	4.7k 1.2×	2.1k 0.6×	415	22.7k
Michael McClelland United States	71	8.6k 0.7×	4.6k 0.9×	3.7k 0.8×	4.1k 1.1×	3.8k 1.1×	331	20.1k
Adam M. Phillippy United States	46	15.7k 1.3×	3.7k 0.7×	5.7k 1.2×	7.6k 2.0×	2.0k 0.6×	83	25.2k
Bob Mau United States	15	9.2k 0.8×	4.0k 0.8×	3.5k 0.8×	2.3k 0.6×	2.1k 0.6×	20	14.4k
Eduardo P. C. Rocha France	76	10.8k 0.9×	4.6k 0.9×	6.3k 1.4×	2.5k 0.7×	2.6k 0.7×	223	18.0k
Glenn Tesler United States	23	15.8k 1.3×	3.3k 0.6×	7.7k 1.7×	6.8k 1.8×	3.3k 1.0×	36	28.8k
Max A. Alekseyev United States	14	10.6k 0.9×	1.9k 0.4×	5.7k 1.2×	4.1k 1.1×	2.5k 0.7×	35	19.9k
Leo Eberl Switzerland	84	12.6k 1.1×	3.0k 0.6×	3.6k 0.8×	5.2k 1.4×	3.5k 1.0×	254	21.2k
Frederick R. Blattner United States	65	16.3k 1.4×	8.0k 1.6×	5.2k 1.1×	2.9k 0.7×	3.9k 1.1×	135	24.5k

Countries citing papers authored by Nicole T. Perna

Since Specialization

Citations

This map shows the geographic impact of Nicole T. Perna's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Nicole T. Perna with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Nicole T. Perna more than expected).

Fields of papers citing papers by Nicole T. Perna

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Nicole T. Perna. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Nicole T. Perna. The network helps show where Nicole T. Perna may publish in the future.

Co-authorship network of co-authors of Nicole T. Perna

This figure shows the co-authorship network connecting the top 25 collaborators of Nicole T. Perna. A scholar is included among the top collaborators of Nicole T. Perna based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Nicole T. Perna. Nicole T. Perna is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Perna, Nicole T., Jeremy D. Glasner, Jianjun Hao, et al.. (2019). Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato. Microbiology Resource Announcements. 8(7). 11 indexed citations

Ma, Bing, Amy O. Charkowski, Jeremy D. Glasner, & Nicole T. Perna. (2014). Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning. BMC Genomics. 15(1). 508–508. 12 indexed citations

Broadbent, Jeffery R., Eric C Neeno-Eckwall, Buffy Stahl, et al.. (2012). Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics. 13(1). 533–533. 116 indexed citations

Baumler, David J., et al.. (2011). The evolution of metabolic networks of E. coli. BMC Systems Biology. 5(1). 182–182. 54 indexed citations

Darling, Aaron E., Bob Mau, & Nicole T. Perna. (2010). progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement. PLoS ONE. 5(6). e11147–e11147. 2979 indexed citations breakdown →

Lindeberg, Magdalen, B. S. Biehl, Jeremy D. Glasner, et al.. (2009). Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains. BMC Microbiology. 9(S1). S4–S4. 52 indexed citations

Rissman, Anna I., Bob Mau, B. S. Biehl, et al.. (2009). Reordering contigs of draft genomes using the Mauve Aligner. Bioinformatics. 25(16). 2071–2073. 451 indexed citations

Zaremba, Sam, Thomas H. Hampton, J. M. Greene, et al.. (2009). Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens. BMC Bioinformatics. 10(1). 177–177. 16 indexed citations

Glasner, Jeremy D., Courtney E. Jahn, Bing Ma, et al.. (2008). Niche-Specificity and the Variable Fraction of the Pectobacterium Pan-Genome. Molecular Plant-Microbe Interactions. 21(12). 1549–1560. 91 indexed citations

10.

Anderson, Bradley D., Michael C. Gilson, B. S. Biehl, et al.. (2006). CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data. BMC Genomics. 7(1). 91–91. 4 indexed citations

11.

Darling, Aaron E., Mark Craven, Bob Mau, & Nicole T. Perna. (2004). Multiple alignment of rearranged genomes. 738–739. 2 indexed citations

12.

Yang, Shihui, Nicole T. Perna, Donald A. Cooksey, et al.. (2004). Genome-Wide Identification of Plant-Upregulated Genes of Erwinia chrysanthemi 3937 Using a GFP-Based IVET Leaf Array. Molecular Plant-Microbe Interactions. 17(9). 999–1008. 64 indexed citations

13.

Darling, Aaron E., Bob Mau, Frederick R. Blattner, & Nicole T. Perna. (2004). Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements. Genome Research. 14(7). 1394–1403. 3643 indexed citations breakdown →

14.

Lathem, Wyndham W., et al.. (2003). Acquisition ofstcE,a C1 Esterase Inhibitor–Specific Metalloprotease, during the Evolution ofEscherichia coliO157:H7. The Journal of Infectious Diseases. 187(12). 1907–1914. 18 indexed citations

15.

Darling, Aaron E., Bob Mau, Frederick R. Blattner, & Nicole T. Perna. (2003). GRIL: genome rearrangement and inversion locator. Bioinformatics. 20(1). 122–124. 25 indexed citations

16.

Welch, Rodney A., Valerie Burland, Guy Plunkett, et al.. (2002). Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proceedings of the National Academy of Sciences. 99(26). 17020–17024. 1144 indexed citations breakdown →

17.

Torres, Alfredo G., Nicole T. Perna, Valerie Burland, et al.. (2002). Characterization of Cah, a calcium‐binding and heat‐extractable autotransporter protein of enterohaemorrhagic Escherichia coli. Molecular Microbiology. 45(4). 951–966. 88 indexed citations

18.

Okinaka, Yasushi, Ching‐Hong Yang, Nicole T. Perna, & Noel T. Keen. (2002). Microarray Profiling ofErwinia chrysanthemi3937 Genes That are Regulated During Plant Infection. Molecular Plant-Microbe Interactions. 15(7). 619–629. 49 indexed citations

19.

Lim, Alex, Eileen T. Dimalanta, Konstantinos Potamousis, et al.. (2001). Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome. Genome Research. 11(9). 1584–1593. 64 indexed citations

20.

Perna, Nicole T. & Thomas D. Kocher. (1996). Mitochondrial DNA: Molecular fossils in the nucleus. Current Biology. 6(2). 128–129. 86 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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