Nicole T. Perna

29.5k citations

60 papers · 19.9k indexed · 6 hit papers · h-index 34

Endocrinology top 0.05%
- Escherichia coli research studies 15
Molecular Medicine top 0.2%
Genetics top 0.1%
- Bacterial Genetics and Biotechnology 11
Ecology top 0.2%
- Bacteriophages and microbial interactions 8
Molecular Biology top 0.2%
- Genomics and Phylogenetic Studies 17
Plant Science
- Plant Pathogenic Bacteria Studies 14
- Plant-Microbe Interactions and Immunity 13
- Legume Nitrogen Fixing Symbiosis 8
Infectious Diseases
- Viral gastroenteritis research and epidemiology 7

Co-authors: Bob Mau Aaron E. Darling Frederick R. Blattner Thomas D. Kocher Thomas Köcher Jeremy D. Glasner Valerie Burland George F. Mayhew
Cited by: Endocrinology Molecular Medicine Genetics
Partner nations: United States France United Kingdom

In The Last Decade

Nicole T. Perna

60 papers receiving 19.5k citations

Hit Papers

6 papers align trajectories log scale

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

2010 progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2004 Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
2002 Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
1997 The Complete Genome Sequence of Escherichia coli K-12
1995 Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
1995 Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

Peers

Countries citing papers authored by Nicole T. Perna

Since Specialization

Citations

This map shows the geographic impact of Nicole T. Perna's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Nicole T. Perna with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Nicole T. Perna more than expected).

Fields of papers citing papers by Nicole T. Perna

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Nicole T. Perna. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Nicole T. Perna. The network helps show where Nicole T. Perna may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Nicole T. Perna, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Nicole T. Perna Line = papers co-authored together Nicole T. Perna links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning Bing Ma,Amy O. Charkowski,Jeremy D. Glasner,Nicole T. Perna	2014	12
2	Inferring ancient metabolism using ancestral core metabolic models of enterobacteria David J. Baumler,Bing Ma,Jennifer L. Reed,Nicole T. Perna	2013	13
3	Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation Jeffery R. Broadbent,Eric C Neeno-Eckwall,Buffy Stahl,Kanokwan Tandee,Hui Cai,Wesley Morovic,Philippe Horvath,J. Heidenreich,Nicole T. Perna,Rodolphe Barrangou,J. L. Steele	2012	116
4	The evolution of metabolic networks of E. coli David J. Baumler,Roman G Peplinski,Jennifer L. Reed,Jeremy D. Glasner,Nicole T. Perna	2011	54
5	chipD: a web tool to design oligonucleotide probes for high-density tiling arrays Y. Dufour,G.E. Wesenberg,Andrew Tritt,Jeremy D. Glasner,Nicole T. Perna,James C. Mitchell,Timothy J. Donohue	2010	19
6	progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangementbreakdown → Aaron E. Darling,Bob Mau,Nicole T. Perna	2010	2979
7	Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens Sam Zaremba,Mila Ramos-Santacruz,Thomas H. Hampton,Panna Shetty,Joel Fedorko,Jon Whitmore,J. M. Greene,Nicole T. Perna,Jeremy D. Glasner,Guy Plunkett,Matthew Shaker,David Pot	2009	16
8	Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains Magdalen Lindeberg,B. S. Biehl,Jeremy D. Glasner,Nicole T. Perna,Alan Collmer,Candace Whitmer Collmer	2009	52
9	Niche-Specificity and the Variable Fraction of the Pectobacterium Pan-Genome Jeremy D. Glasner,Maria del Pilar Marquez-Villavicencio,Ho-Won Kim,Courtney E. Jahn,Bing Ma,B. S. Biehl,Anna I. Rissman,Beth Mole,Xin Yi,Ching‐Hong Yang,Jeffery L. Dangl,Sarah R. Grant,Nicole T. Perna,Amy O. Charkowski	2008	91
10	Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli Bob Mau,Jeremy D. Glasner,Aaron E. Darling,Nicole T. Perna	2006	56
11	Multiple alignment of rearranged genomes Aaron E. Darling,Mark Craven,Bob Mau,Nicole T. Perna	2004	2
12	Genome-Wide Identification of Plant-Upregulated Genes of Erwinia chrysanthemi 3937 Using a GFP-Based IVET Leaf Array Shihui Yang,Nicole T. Perna,Donald A. Cooksey,Yasushi Okinaka,Steven E. Lindow,A. Mark Ibekwe,Noel T. Keen,Ching‐Hong Yang	2004	64
13	Acquisition ofstcE,a C1 Esterase Inhibitor–Specific Metalloprotease, during the Evolution ofEscherichia coliO157:H7 Wyndham W. Lathem,Tessa Bergsbaken,Sarah E. Witowski,Nicole T. Perna,Rodney A. Welch	2003	18
14	GRIL: genome rearrangement and inversion locator Aaron E. Darling,Bob Mau,Frederick R. Blattner,Nicole T. Perna	2003	25
15	Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia colibreakdown → Rodney A. Welch,Valerie Burland,Guy Plunkett,Peter Redford,P. Roesch,David A. Rasko,Eric L. Buckles,Shian‐Ren Liou,A. Boutin,Jeremiah D. Hackett,Dave Stroud,George F. Mayhew,Divya Rose,Shiguo Zhou,David C. Schwartz,Nicole T. Perna,Harry L. T. Mobley,Michael S. Donnenberg,Frederick R. Blattner	2002	1144
16	Characterization of Cah, a calcium‐binding and heat‐extractable autotransporter protein of enterohaemorrhagic Escherichia coli Alfredo G. Torres,Nicole T. Perna,Valerie Burland,A. Ruknudin,Fred R. Blattner,James B. Kaper	2002	88
17	Microarray Profiling ofErwinia chrysanthemi3937 Genes That are Regulated During Plant Infection Yasushi Okinaka,Ching‐Hong Yang,Nicole T. Perna,Noel T. Keen	2002	49
18	Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome Alex Lim,Eileen T. Dimalanta,Konstantinos Potamousis,Galex Yen,Jennifer Apodoca,Tao Chunhong,Jie‐Yi Lin,Rong Qi,John Skiadas,Arvind Ramanathan,Nicole T. Perna,Guy Plunkett,Valerie Burland,Bob Mau,Jeremiah D. Hackett,Frederick R. Blattner,Thomas Anantharaman,Bud Mishra,David C. Schwartz	2001	64
19	Identification of ophiuroid post-larvae using mitochondrial DNA Dorothy E. Medeiros‐Bergen,Nicole T. Perna,Janet A. Conroy,Thomas Köcher	1998	1
20	Mitochondrial DNA: Molecular fossils in the nucleus Nicole T. Perna,Thomas D. Kocher	1996	86

About Nicole T. Perna

Nicole T. Perna is a scholar working on Endocrinology, Genetics and Plant Science, having authored 60 papers that have together received 19.9k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (17 papers), Escherichia coli research studies (15 papers), Plant Pathogenic Bacteria Studies (14 papers), Plant-Microbe Interactions and Immunity (13 papers), Bacterial Genetics and Biotechnology (11 papers), Bacteriophages and microbial interactions (8 papers), Legume Nitrogen Fixing Symbiosis (8 papers) and Viral gastroenteritis research and epidemiology (7 papers). The work is most often cited by research in Endocrinology (3.4k citations), Molecular Medicine (1.4k citations) and Genetics (5.2k citations). Nicole T. Perna has collaborated with scholars based in United States, France and United Kingdom. Frequent co-authors include Bob Mau, Aaron E. Darling, Frederick R. Blattner, Thomas D. Kocher, Thomas Köcher, Jeremy D. Glasner, Valerie Burland, George F. Mayhew, Guy Plunkett and Monica Riley.

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