Amrita Pati

14.8k total citations · 4 hit papers
99 papers, 4.4k citations indexed

About

Amrita Pati is a scholar working on Molecular Biology, Ecology and Plant Science. According to data from OpenAlex, Amrita Pati has authored 99 papers receiving a total of 4.4k indexed citations (citations by other indexed papers that have themselves been cited), including 77 papers in Molecular Biology, 48 papers in Ecology and 40 papers in Plant Science. Recurrent topics in Amrita Pati's work include Genomics and Phylogenetic Studies (72 papers), Microbial Community Ecology and Physiology (37 papers) and Legume Nitrogen Fixing Symbiosis (34 papers). Amrita Pati is often cited by papers focused on Genomics and Phylogenetic Studies (72 papers), Microbial Community Ecology and Physiology (37 papers) and Legume Nitrogen Fixing Symbiosis (34 papers). Amrita Pati collaborates with scholars based in United States, Saudi Arabia and Australia. Amrita Pati's co-authors include Natalia Ivanova, Nikos C. Kyrpides, Konstantinos Mavrommatis, Marcel Huntemann, Victor Markowitz, Tanja Woyke, Neha Varghese, Supratim Mukherjee, Konstantinos Mavromatis and Konstantinos T. Konstantinidis and has published in prestigious journals such as Science, Cell and Nucleic Acids Research.

In The Last Decade

Amrita Pati

95 papers receiving 4.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters

2014 698 citations Peter Cimermančič, Amrita Pati et al. profile →
Microbial species delineation using whole genome sequences

2015 503 citations Neha Varghese, Supratim Mukherjee et al. Nucleic Acids Research profile →
Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

2014 460 citations Jörn Petersen, Manfred Rohde et al. Standards in Genomic Sciences profile →
IMG 4 version of the integrated microbial genomes comparative analysis system

2013 431 citations Victor Markowitz, I-Min A. Chen et al. Nucleic Acids Research profile →

Peers

Countries citing papers authored by Amrita Pati

Since Specialization

Citations

This map shows the geographic impact of Amrita Pati's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Amrita Pati with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Amrita Pati more than expected).

Fields of papers citing papers by Amrita Pati

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Amrita Pati. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Amrita Pati. The network helps show where Amrita Pati may publish in the future.

Co-authorship network of co-authors of Amrita Pati

This figure shows the co-authorship network connecting the top 25 collaborators of Amrita Pati. A scholar is included among the top collaborators of Amrita Pati based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Amrita Pati. Amrita Pati is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host 2022 ·Frontiers in Microbiology ·Bertrand D. Eardly, (unknown), Julie Ardley, (unknown), (unknown), Peter van Berkum, (unknown), Дора Маринова, R. Seshadri, T. B. K. Reddy, Natalia Ivanova, Amrita Pati, Tanja Woyke, Nikos C. Kyrpides, (unknown), Damian W. Laird, Wayne Reeve	2
2	High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain 2017 ·Standards in Genomic Sciences ·(unknown), Peter van Berkum, Milagros León‐Barrios, Encarna Velázquez, (unknown), Rui Tian, Julie Ardley, (unknown), R. Seshadri, T. B. K. Reddy, Natalia Ivanova, Tanja Woyke, Amrita Pati, Victor Markowitz, (unknown), (unknown), Nikos C. Kyrpides, Wayne Reeve	1
3	Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations 2016 ·The ISME Journal ·Matthew L. Bendall, Sarah Stevens, (unknown), Stephanie Malfatti, Patrick Schwientek, Julien Tremblay, Wendy Schackwitz, Joel Martin, Amrita Pati, Brian Bushnell, Jeff Froula, Dongwan Kang, Susannah G. Tringe, Stefan Bertilsson, Mary Ann Moran, Ashley Shade, Ryan J. Newton, Katherine D. McMahon, Rex R. Malmstrom	160
4	The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4) 2016 ·Standards in Genomic Sciences ·Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, H. James Tripp, David Páez-Espino, Kristin Tennessen, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor Markowitz, Nikos C. Kyrpides	93
5	IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites 2015 ·mBio ·Michalis Hadjithomas, (unknown), Ken Chu, Anna Ratner, Krishna Palaniappan, Ernest Szeto, Jinghua Huang, T. B. K. Reddy, Peter Cimermančič, Michael A. Fischbach, Natalia Ivanova, Victor Markowitz, Nikos C. Kyrpides, Amrita Pati	69
6	High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil 2015 ·Standards in Genomic Sciences ·Julie Ardley, Rui Tian, Graham O’Hara, R. Seshadri, T. B. K. Reddy, Amrita Pati, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Nikos C. Kyrpides, John Howieson, Wayne Reeve	1
7	High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea 2015 ·Standards in Genomic Sciences ·Spyridon Ntougias, Alla Lapidus, Alex Copeland, T. B. K. Reddy, Amrita Pati, Natalia Ivanova, Victor Markowitz, Hans‐Peter Klenk, Tanja Woyke, (unknown), Nikos C. Kyrpides, Georgios I. Zervakis	6
8	Large-scale contamination of microbial isolate genomes by Illumina PhiX control 2015 ·Standards in Genomic Sciences ·Supratim Mukherjee, Marcel Huntemann, Natalia Ivanova, Nikos C. Kyrpides, Amrita Pati	106
9	High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556T 2015 ·Standards in Genomic Sciences ·Sofie E. De Meyer, Rui Tian, R. Seshadri, Natalia Ivanova, Amrita Pati, Victor Markowitz, Tanja Woyke, Ron Yates, John Howieson, Nikos C. Kyrpides, Wayne Reeve	1
10	High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica 2015 ·Standards in Genomic Sciences ·Rui Tian, Matthew A. Parker, R. Seshadri, T. B. K. Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Mohammed N. Baeshen, Nabih A. Baeshen, Nikos C. Kyrpides, Wayne Reeve	2
11	Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T 2015 ·Standards in Genomic Sciences ·Tom Berben, Dimitry Y. Sorokin, Natalia Ivanova, Amrita Pati, Nikos C. Kyrpides, Lynne Goodwin, Tanja Woyke, Gerard Muyzer	3
12	High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture 2015 ·Standards in Genomic Sciences ·Dong Han Choi, (unknown), Gwang Il Jang, Alla Lapidus, James Han, T. B. K. Reddy, Marcel Huntemann, Amrita Pati, Natalia Ivanova, Victor Markowitz, Manfred Rohde, Brian J. Tindall, Markus Göker, Tanja Woyke, Hans‐Peter Klenk, Nikos C. Kyrpides, Byung Cheol Cho	5
13	Genome sequence of Leisingera nanhaiensis strain DSM 24252 T isolated from marine sediment 2014 ·Standards in Genomic Sciences ·(unknown), Hazuki Teshima, Jörn Petersen, Olga Chertkov, (unknown), Amy Chen, Amrita Pati, Natalia Ivanova, Alla Lapidus, Lynne Goodwin, Patrick Chain, John C. Detter, Manfred Rohde, Brian J. Tindall, Nikos C. Kyrpides, Tanja Woyke, Meinhard Simon, Markus Göker, Hans‐Peter Klenk, Thorsten Brinkhoff	0
14	Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California 2014 ·Standards in Genomic Sciences ·(unknown), Hailan Piao, Nicole M. Scott, Stephanie Malfatti, Ioanna Pagani, Marcel Huntemann, Amy Chen, Tijana Glavina Del Rio, Brian Foster, Alex Copeland, Janet Jansson, Amrita Pati, Susannah G. Tringe, Jack A. Gilbert, Thomas D. Lorenson, Matthias Hess	23
15	Genome sequence of Microvirga lupini strain LUT6T, a novel Lupinus alphaproteobacterial microsymbiont from Texas 2014 ·Standards in Genomic Sciences ·Wayne Reeve, Matthew A. Parker, Rui Tian, Lynne Goodwin, Hazuki Teshima, Roxanne Tapia, Cliff Han, James Han, Konstantinos Liolios, Marcel Huntemann, Amrita Pati, Tanja Woyke, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, Nikos C. Kyrpides	4
16	Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A 2014 ·Standards in Genomic Sciences ·Simon Kelly, John T. Sullivan, Clive W. Ronson, Rui Tian, Lambert Bräu, Christine Munk, Lynne Goodwin, (unknown), Tanja Woyke, (unknown), (unknown), Amrita Pati, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, Nikos C. Kyrpides, Wayne Reeve	22
17	High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China 2014 ·Standards in Genomic Sciences ·Yu Zhou, Rui Li, Xiaoyang Gao, Alla Lapidus, James Han, Matthew Haynes, Elizabeth A. Lobos, Marcel Huntemann, Amrita Pati, Natalia Ivanova, Manfred Rohde, Konstantinos Mavromatis, Brian J. Tindall, Victor Markowitz, Tanja Woyke, Hans‐Peter Klenk, Nikos C. Kyrpides, Wen‐Jun Li	8
18	Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565. 2013 ·Standards in Genomic Sciences ·Wayne Reeve, Elizabeth Drew, Ross Ballard, Vanessa Melino, Rui Tian, Sofie E. De Meyer, Lambert Bräu, (unknown), Hazuki Teshima, Lynne Goodwin, Patrick Chain, Konstantinos Liolios, Amrita Pati, Konstantinos Mavromatis, Natalia Ivanova, Victor Markowitz, Tanja Woyke, Nikos C. Kyrpides	3
19	IMG 4 version of the integrated microbial genomes comparative analysis system breakdown → 2013 ·Nucleic Acids Research ·Victor Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavromatis, Amrita Pati, Natalia Ivanova, Nikos C. Kyrpides	431
20	GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes 2010 ·Nature Methods ·Amrita Pati, Natalia Ivanova, Natalia Mikhailova, Galina Ovchinnikova, Sean Hooper, Athanasios Lykidis, Nikos C. Kyrpides	234

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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