Marcel Reinders

23.0k citations

302 papers · 11.3k · 3 hit papers · h-index 54

Impact in

Molecular Biology top 1%
- Genomics and Chromatin Dynamics
- Gene expression and cancer classification
- Single-cell and spatial transcriptomics
- Bioinformatics and Genomic Networks
- RNA Research and Splicing
- Microbial Metabolic Engineering and Bioproduction
Biophysics top 0.5%

Papers in

Molecular Biology 151
- Gene expression and cancer classification 44
- Bioinformatics and Genomic Networks 39
- Single-cell and spatial transcriptomics 28
- Gene Regulatory Network Analysis 13
Genetics 36
- Genomic variations and chromosomal abnormalities 12

Co-authors: Lodewyk F.A. Wessels (44 shared papers)Arjen P. de Vries (10 shared papers)E. Backer (8 shared papers)Cor J. Veenman (7 shared papers)Ahmed Mahfouz (44 shared papers)Dick de Ridder (36 shared papers)Jun Wang (1 shared paper)Marc Hulsman (34 shared papers)
Journals: Bioinformatics (23 papers)BMC Bioinformatics (13 papers)PLoS ONE (12 papers)Scientific Reports (7 papers)Alzheimer s & Dementia (7 papers)
Partner nations: Netherlands United States United Kingdom

In The Last Decade

Marcel Reinders

291 papers receiving 11.0k citations

Marcel Reinders's Hit Papers

align trajectories log scale

A comparison of automatic cell identification methods for single-cell RNA sequencing data 2019 · 360 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2019 Genome biology
2010 Molecular Cell
2006 Data Archiving and Networked Services (DANS)

Peers

Countries citing papers authored by Marcel Reinders

Since Specialization

Citations

This map shows the geographic impact of Marcel Reinders's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Marcel Reinders with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Marcel Reinders more than expected).

Fields of papers citing papers by Marcel Reinders

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Marcel Reinders. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Marcel Reinders. The network helps show where Marcel Reinders may publish in the future.

Co-authors

The 25 scholars most cited alongside Marcel Reinders, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Marcel Reinders Line = papers co-authored together Marcel Reinders links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 302 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Molecular Maps of the Reorganization of Genome-Nuclear Lamina Interactions during Differentiation Molecular Cell ·Daan Peric‐Hupkes, Wouter Meuleman, Ludo Pagie, Sophia W.M. Bruggeman, Irina Solovei, Wim Brugman, Stefan Gräf, Paul Flicek, Ron Kerkhoven, Maarten van Lohuizen, Marcel Reinders, Lodewyk F.A. Wessels, Bas van Steensel Hit paper breakdown →	2010	778
2	Unifying user-based and item-based collaborative filtering approaches by similarity fusion Data Archiving and Networked Services (DANS) ·Jun Wang, Arjen P. de Vries, Marcel Reinders Hit paper breakdown →	2006	557
3	An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas Nature Genetics ·Paul Roepman, Lodewyk F.A. Wessels, Nienke Kettelarij, Patrick Kemmeren, Antony J. Miles, Philip Lijnzaad, Marcel G.J. Tilanus, Ronald Koole, Gert‐Jan Hordijk, Peter C. van der Vliet, Marcel Reinders, Piet J. Slootweg, Frank C. P. Holstege	2005	362
4	A comparison of automatic cell identification methods for single-cell RNA sequencing data Genome biology ·Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel Reinders, Ahmed Mahfouz Hit paper breakdown →	2019	360
5	Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence Genome Research ·Wouter Meuleman, Daan Peric‐Hupkes, Jop Kind, Jean–Bernard Beaudry, Ludo Pagie, Manolis Kellis, Marcel Reinders, Lodewyk F.A. Wessels, Bas van Steensel	2012	336
6	A maximum variance cluster algorithm IEEE Transactions on Pattern Analysis and Machine Intelligence ·Cor J. Veenman, Marcel Reinders, E. Backer	2002	323
7	An algorithm-based topographical biomaterials library to instruct cell fate Proceedings of the National Academy of Sciences ·H.V. Unadkat, Marc Hulsman, Kamiel Cornelissen, Bernke J. Papenburg, Roman Truckenmüller, Anne E. Carpenter, Matthias Weßling, Gerhard F. Post, Marc Uetz, Marcel Reinders, Dimitrios Stamatialis, Clemens van Blitterswijk, Jan de Boer	2011	306
8	New insights on human T cell development by quantitative T cell receptor gene rearrangement studies and gene expression profiling The Journal of Experimental Medicine ·Willem A. Dik, Karin Pike‐Overzet, Floor Weerkamp, Dick de Ridder, Edwin F. E. de Haas, Miranda R.M. Baert, Peter J. van der Spek, E. Koster, Marcel Reinders, Jacques J. M. van Dongen, Anton W. Langerak, Frank J. T. Staal	2005	235
9	De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology Microbial Cell Factories ·Jurgen F. Nijkamp, Marcel van den Broek, Erwin Datema, Stefan de Kok, Lizanne Bosman, Marijke A. H. Luttik, Pascale Daran‐Lapujade, Wanwipa Vongsangnak, Jens Nielsen, Wilbert H. M. Heijne, Paul Klaassen, Christopher J. Paddon, Darren Platt, Peter Kötter, Roeland C van Ham, Marcel Reinders, Jack T. Pronk, Dick de Ridder, Jean‐Marc Daran	2012	223
10	TRIBLER: a social‐based peer‐to‐peer system Concurrency and Computation Practice and Experience ·Johan Pouwelse, P. Garbacki, Jiangyu Wang, A. Bakker, James Yang, Alexandru Iosup, Dick Epema, Marcel Reinders, Maarten van Steen, HJ Sips	2007	217
11	Resolving motion correspondence for densely moving points IEEE Transactions on Pattern Analysis and Machine Intelligence ·Cor J. Veenman, Marcel Reinders, E. Backer	2001	213
12	Random subspace method for multivariate feature selection Pattern Recognition Letters ·Carmen Lai, Marcel Reinders, Lodewyk F.A. Wessels	2006	160
13	Molecular classification of breast carcinomas by comparative genomic hybridization: a specific somatic genetic profile for BRCA1 tumors. PubMed ·Lodewyk F.A. Wessels, Tibor van Welsem, Augustinus A. M. Hart, Laura J. van’t Veer, Marcel Reinders, Petra M. Nederlof	2002	157
14	Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy Scientific Reports ·N. Doorenweerd, Ahmed Mahfouz, Maaike van Putten, Rajaram Kaliyaperumal, Peter A.C. ’t Hoen, Jos G.M. Hendriksen, Annemieke Aartsma‐Rus, Jan J.G.M. Verschuuren, E. Niks, Marcel Reinders, Hermien E. Kan, Boudewijn P. F. Lelieveldt	2017	153
15	Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types Nature Communications ·Vincent van Unen, Thomas Höllt, Nicola Pezzotti, Na Li, Marcel Reinders, Elmar Eisemann, Frits Koning, Anna Vilanova, Boudewijn P. F. Lelieveldt	2017	151
16	Sign Language Recognition by Combining Statistical DTW and Independent Classification IEEE Transactions on Pattern Analysis and Machine Intelligence ·Jeroen Lichtenauer, Ella Hendriks, Marcel Reinders	2008	145
17	Fewer permutations, more accurate P-values Bioinformatics ·Theo Knijnenburg, Lodewyk F.A. Wessels, Marcel Reinders, Ilya Shmulevich	2009	144
18	Large-Scale Mutagenesis in p19ARF- and p53-Deficient Mice Identifies Cancer Genes and Their Collaborative Networks Cell ·Anthony G. Uren, Jaap Kool, Konstantin Matentzoglu, Jeroen de Ridder, Jenny Mattison, Miranda van Uitert, Wendy Lagcher, Daoud Sie, Ellen Tanger, Tony Cox, Marcel Reinders, Tim Hubbard, Jane Rogers, Jos Jonkers, Lodewyk F.A. Wessels, David J. Adams, Maarten van Lohuizen, Anton Berns	2008	140
19	Data-driven identification of prognostic tumor subpopulations using spatially mapped t-SNE of mass spectrometry imaging data Proceedings of the National Academy of Sciences ·Walid M. Abdelmoula, Benjamin Balluff, Sonja Englert, Jouke Dijkstra, Marcel Reinders, Axel Walch, Liam A. McDonnell, Boudewijn P. F. Lelieveldt	2016	139
20	RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage Annals of the Rheumatic Diseases ·Rodrigo Coutinho de Almeida, Y.F. Ramos, Ahmed Mahfouz, Wouter den Hollander, Nico Lakenberg, E. Houtman, Marcella van Hoolwerff, H. Eka D. Suchiman, Alejandro Rodríguez Ruiz, P. Eline Slagboom, Hailiang Mei, Szymon M. Kiełbasa, Rob G. H. H. Nelissen, Marcel Reinders, Ingrid Meulenbelt	2019	132

About Marcel Reinders

Marcel Reinders is a scholar working on Molecular Biology, Genetics, Computer Vision and Pattern Recognition, Cancer Research and Artificial Intelligence, having authored 302 papers that have together received 11.3k indexed citations. Recurring topics across this work include Gene expression and cancer classification (44 papers), Bioinformatics and Genomic Networks (39 papers), Single-cell and spatial transcriptomics (28 papers), Cancer Genomics and Diagnostics (16 papers), Recommender Systems and Techniques (14 papers), Cell Image Analysis Techniques (14 papers), Gene Regulatory Network Analysis (13 papers) and Genomic variations and chromosomal abnormalities (12 papers). The work is most often cited by research in Molecular Biology (5.5k citations), Biophysics (381 citations), Cancer Research (812 citations), Aging (99 citations) and Computer Vision and Pattern Recognition (1.1k citations). Marcel Reinders has collaborated with scholars based in Netherlands, United States and United Kingdom. Frequent co-authors include Lodewyk F.A. Wessels, Arjen P. de Vries, E. Backer, Cor J. Veenman, Ahmed Mahfouz, Dick de Ridder, Jun Wang, Marc Hulsman, Wouter Meuleman and Tamim Abdelaal. Their work appears in journals such as Bioinformatics, BMC Bioinformatics, PLoS ONE, Scientific Reports and Alzheimer s & Dementia.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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Marcel Reinders

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Marcel Reinders

Marcel Reinders's Hit Papers

Peers

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Fields of papers citing papers by Marcel Reinders

All Works

About Marcel Reinders

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