Dick de Ridder

12.4k citations

170 papers · 6.0k indexed · 1 hit paper · h-index 37

Impact in

Biological Psychiatry top 2%
Molecular Biology top 2%
- Microbial Metabolic Engineering and Bioproduction
- Genomics and Phylogenetic Studies
- Fungal and yeast genetics research
- RNA and protein synthesis mechanisms
- Gene Regulatory Network Analysis
- Bioinformatics and Genomic Networks

Papers in

Molecular Biology 102
- Genomics and Phylogenetic Studies 33
- Microbial Metabolic Engineering and Bioproduction 19
- Bioinformatics and Genomic Networks 19
- RNA and protein synthesis mechanisms 16
- Machine Learning in Bioinformatics 13
- Gene expression and cancer classification 11
Plant Science 40
- Chromosomal and Genetic Variations 20

Co-authors: M. Egmont‐Petersen Heinz Handels Marcel Reinders Robert P. W. Duin Bas Teusink Douwe Molenaar Aalt D. J. van Dijk Frank J. T. Staal
Journals: Bioinformatics (14 papers)PLoS ONE (8 papers)The Plant Journal (8 papers)BMC Bioinformatics (7 papers)BMC Genomics (5 papers)
Partner nations: Netherlands United States United Kingdom

In The Last Decade

Dick de Ridder

164 papers receiving 5.8k citations

Hit Papers

align trajectories log scale

Image processing with neural networks—a review 2002 · 773 citations

Peers

Countries citing papers authored by Dick de Ridder

Since Specialization

Citations

This map shows the geographic impact of Dick de Ridder's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Dick de Ridder with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Dick de Ridder more than expected).

Fields of papers citing papers by Dick de Ridder

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Dick de Ridder. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Dick de Ridder. The network helps show where Dick de Ridder may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Dick de Ridder, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Dick de Ridder Line = papers co-authored together Dick de Ridder links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Pangenomics to understand prophage dynamics in the Pectobacterium genus and the radiating lineages of Pectobacterium brasiliense Microbial Genomics ·Lakhansing Pardeshi, Mo Guixi, Michiel J. C. Pel, RAISSA KAROLLINY SALGUEIRO CRUZ, Anne Kupczok, Dick de Ridder, Sandra Smit, Théo van der Lee	2025	1
2	A generic pipeline for CADD score generation: chickenCADD and turkeyCADD G3 Genes Genomes Genetics ·Leticia Muñoz, Анатолий Петрович Черных, Dick de Ridder, Martien A. M. Groenen, Martijn F. L. Derks	2025	1
3	Expanding the triangle of U: comparative analysis of the Hirschfeldia incana genome provides insights into chromosomal evolution, phylogenomics and high photosynthesis-related traits Annals of Botany ·Nam V. Hoang, Nora Walden, A. Carola, Eusebio Adeba Vallina, 义向, 孙彦辉, 俊雄稲田, A. Trémeau, Frank Becker, Patrick Verbaarschot, Jeremy Harbinson, Steven M. Driever, P.C. Struik, Herbert van Amerongen, Dick de Ridder, Mark G. M. Aarts, M. Eric Schranz	2024	3
4	Allelic variants confer Arabidopsis adaptation to small regional environmental differences The Plant Journal ·Alyssa Ekstrom, 健太郎富井, Frank Becker, Tom P. J. M. Theeuwen, Basten L. Snoek, В.Н. Маслов, R. M. Schuster, M. S. ShyamaSundar, Marya Al Balushi, Maarten Koornneef, Fred A. van Eeuwijk, Sandra Smit, Dick de Ridder, Mark G. M. Aarts	2024	0
5	Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases PLoS Computational Biology ·Janani Durairaj, Svetlana Glikin, Harro J. Bouwmeester, Jules Beekwilder, Dick de Ridder, Aalt D. J. van Dijk	2021	19
6	The Genome of Peronospora belbahrii Reveals High Heterozygosity, a Low Number of Canonical Effectors, and TC-Rich Promoters Molecular Plant-Microbe Interactions ·Marco Thines, Rahul Sharma, Sander Y.A. Rodenburg, Anna Gogleva, Howard S. Judelson, Xiaojuan Xia, 秀之佐生, Miloslav Kitner, Joel D. Klein, Khadir Raddassi, Dick de Ridder, Michael Seidl, Guido Van den Ackerveken, Francine Govers, Sebastián Schornack, David J. Studholme	2020	18
7	Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana G3 Genes Genomes Genetics ·Mari Mamyan, Ronny V.L. Joosen, Basten L. Snoek, Leo A. J. Willems, Mark G. Sterken, Dick de Ridder, Henk W. M. Hilhorst, Wilco Ligterink, Harm Nijveen	2020	7
8	Geometricus represents protein structures as shape-mers derived from moment invariants Bioinformatics ·Janani Durairaj, Mehmet Akdel, Dick de Ridder, Aalt D. J. van Dijk	2020	21
9	WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans Database ·Basten L. Snoek, Mark G. Sterken, Mari Mamyan, ROBERT EASTING, Jan E. Kammenga, Dick de Ridder, Harm Nijveen	2019	16
10	Metabolic Model of thePhytophthora infestans-Tomato Interaction Reveals Metabolic Switches during Host Colonization mBio ·Sander Y.A. Rodenburg, Michael Seidl, Howard S. Judelson, Andrea L. Vu, Francine Govers, Dick de Ridder	2019	32
11	Improved inference of intermolecular contacts through protein–protein interaction prediction using coevolutionary analysis Bioinformatics ·Miguel Correa Marrero, Richard G. H. Immink, Dick de Ridder, Aalt D. J. van Dijk	2018	6
12	TriPoly: haplotype estimation for polyploids using sequencing data of related individuals Bioinformatics ·Ehsan Motazedi, Dick de Ridder, Richard Finkers, Samantha Baldwin, Susan Thomson, E. S. Nash, Chris Maliepaard	2018	16
13	poreTally: run and publish de novo nanopore assembler benchmarks Bioinformatics ·Olivia Muñoz, Judith Risse, Dick de Ridder	2018	1
14	Genome‐wide characterization of Phytophthora infestans metabolism: a systems biology approach Molecular Plant Pathology ·Sander Y.A. Rodenburg, Michael Seidl, Dick de Ridder, Francine Govers	2017	27
15	AraQTL – workbench and archive for systems genetics in Arabidopsis thaliana The Plant Journal ·Harm Nijveen, Wilco Ligterink, Joost J. B. Keurentjes, Olivier Loudet, Thaís Becker Ventura, Mark G. Sterken, Pjotr Prins, Henk W. M. Hilhorst, Dick de Ridder, Jan E. Kammenga, Basten L. Snoek	2016	13
16	Topology of molecular interaction networks BMC Systems Biology ·Colby R. Parks, Piet Van Mieghem, Marcel Reinders, Huijuan Wang, Dick de Ridder	2013	74
17	Proceedings of the 6th IAPR international conference on Pattern recognition in bioinformatics Marco Loog, Marcel Reinders, Dick de Ridder, Lodewyk F.A. Wessels	2011	5
18	The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae Molecular BioSystems ·Andreas O. Helbig, Pascale Daran‐Lapujade, Antonius J. A. van Maris, Erik A. F. de Hulster, Dick de Ridder, Jack T. Pronk, Albert J. R. Heck, Monique Slijper	2011	26
19	Structural, Syntactic and Statistical Pattern Recognition: Joint IAPR International Workshops, SSPR 2006 and SPR 2006, Hong Kong, China, August 17-19, 2006: proceedings Digital Access to Libraries (Université catholique de Louvain (UCL), l'Université de Namur (UNamur) and the Université Saint-Louis (USL-B)) ·Dit‐Yan Yeung, James T. Kwok, Ana Fred, Fabio Roli, Dick de Ridder	2006	10
20	Structural, Syntactic, And Statistical Pattern Recognition: Joint Iapr International Workshops, Sspr 2004 And Spr 2004, Lisbon, Portugal, August 18-20 ... oceedings (Lecture Notes in Computer Science) Springer eBooks ·Ana Fred, Terry Caelli, Robert P. W. Duin, Aurélio Campilho, Dick de Ridder	2004	0

About Dick de Ridder

Dick de Ridder is a scholar working on Molecular Biology, Plant Science, Horticulture, Genetics and Analytical Chemistry, having authored 170 papers that have together received 6.0k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (33 papers), Chromosomal and Genetic Variations (20 papers), Microbial Metabolic Engineering and Bioproduction (19 papers), Bioinformatics and Genomic Networks (19 papers), RNA and protein synthesis mechanisms (16 papers), Machine Learning in Bioinformatics (13 papers), Neural Networks and Applications (12 papers) and Gene expression and cancer classification (11 papers). The work is most often cited by research in Biological Psychiatry (188 citations), Molecular Biology (2.7k citations), Genetics (934 citations), Computer Vision and Pattern Recognition (565 citations) and Immunology (590 citations). Dick de Ridder has collaborated with scholars based in Netherlands, United States and United Kingdom. Frequent co-authors include M. Egmont‐Petersen, Heinz Handels, Marcel Reinders, Robert P. W. Duin, Bas Teusink, Douwe Molenaar, Aalt D. J. van Dijk, Frank J. T. Staal, David M. J. Tax and Ferdinand van der Heijden. Their work appears in journals such as Bioinformatics, PLoS ONE, The Plant Journal, BMC Bioinformatics and BMC Genomics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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