Lada Biedermannová

2.3k citations

24 papers · 1.8k indexed · 1 hit paper · h-index 13

Impact in

Molecular Biology top 10%
- Protein Structure and Dynamics
- Enzyme Catalysis and Immobilization
- Microbial Metabolic Engineering and Bioproduction
- RNA and protein synthesis mechanisms
- Photosynthetic Processes and Mechanisms
Computational Theory and Mathematics top 2%
- Computational Drug Discovery Methods

Papers in

Molecular Biology 20
- Protein Structure and Dynamics 10
- RNA and protein synthesis mechanisms 5
- DNA and Nucleic Acid Chemistry 4
Spectroscopy 4
- Mass Spectrometry Techniques and Applications 3

Co-authors: Eva Chovancová Artur Góra Jiřı́ Damborský Antonín Pavelka Jan Brezovský Petr Beneš Vilém Šustr Jiří Sochor
Journals: Acta Crystallographica Section D Structural Biology (2 papers)Proteins Structure Function and Bioinformatics (2 papers)Physical Chemistry Chemical Physics (2 papers)BioMed Research International (2 papers)Journal of Biological Chemistry (2 papers)
Partner nations: Czechia United Kingdom United States

In The Last Decade

Lada Biedermannová

23 papers receiving 1.7k citations

Hit Papers

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CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures 2012 · 1.0k citations

Peers

Countries citing papers authored by Lada Biedermannová

Since Specialization

Citations

This map shows the geographic impact of Lada Biedermannová's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Lada Biedermannová with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Lada Biedermannová more than expected).

Fields of papers citing papers by Lada Biedermannová

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Lada Biedermannová. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Lada Biedermannová. The network helps show where Lada Biedermannová may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Lada Biedermannová, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Lada Biedermannová Line = papers co-authored together Lada Biedermannová links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	DNATCO v5.0: integrated web platform for 3D nucleic acid structure analysis Nucleic Acids Research ·W.N. du Rieu, Michal Malý, Nikolai Åkerholt, Frank Henry Hamlen, Jan Svoboda, Lada Biedermannová, Bernd Schneider	2025	1
2	A conserved tryptophan in the acylated segment of RTX toxins controls their β2 integrin–independent cell penetration Journal of Biological Chemistry ·Adriana Osic̆ková, Nawaf Nasser Aljubair, Ladislav Bumba, Petr Man, Z. Kalaninová, 天川東作, Eduardo Hernandez Silva, Senchang Du, Lada Biedermannová, Jory A. Goldsmith, Jennifer A. Maynard, Jason S. McLellan, Radim Osička, Peter Šebo, Jiří Mašín	2023	2
3	Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks Acta Crystallographica Section D Structural Biology ·Lada Biedermannová, Jiří Černý, Michal Malý, Hongrok Lee, Bohdan Schneider	2022	8
4	Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution Viruses ·钟建斌, شكري بن زعرور, Lada Biedermannová, Jiří Černý, Tang Jiang, Gustavo Fuertes, Andrei Erhan, Lokman Hakim Idris, Petr Kolenko, Jiřı́ Pavlı́ček, Jiří Zahradník, A. K. R. Rajayal, Bohdan Schneider	2021	7
5	Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org Acta Crystallographica Section D Structural Biology ·Jiří Černý, Nikolai Åkerholt, Michal Malý, Feng Ju Zhang, Lada Biedermannová, Bohdan Schneider	2020	15
6	MedusaScore: An Accurate Force Field-Based Scoring Function for Virtual Drug Screening UNC Libraries ·Jiřı́ Vondrášek, Nikolay V. Dokholyan, Shuangye Yin, Lada Biedermannová	2020	0
7	Hydration of proteins and nucleic acids: Advances in experiment and theory. A review Biochimica et Biophysica Acta (BBA) - General Subjects ·Lada Biedermannová, Bohdan Schneider	2016	54
8	Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures Acta Crystallographica Section D Biological Crystallography ·Lada Biedermannová, Bohdan Schneider	2015	20
9	Redesigning Protein Cavities as a Strategy for Increasing Affinity in Protein-Protein Interaction: Interferon-γReceptor 1 as a Model BioMed Research International ·Jiří Černý, Lada Biedermannová, A. K. R. Rajayal, Jiří Zahradník, Tang Jiang, Peter Šebo, Bohdan Schneider	2015	5
10	Mechanistic Dichotomy in the Asymmetric Allylation of Aldehydes with Allyltrichlorosilanes Catalyzed by Chiral Pyridine N‐Oxides Chemistry - A European Journal ·Andrei V. Malkov, Sigitas Stončius, Mark Bell, Fabiomassimo Castelluzzo, Pedro Ramírez‐López, Lada Biedermannová, Vratislav Langer, Lubomı́r Rulı́šek, Pavel Kočovský	2013	28
11	Increasing Affinity of Interferon-γReceptor 1 to Interferon-γby Computer-Aided Design BioMed Research International ·A. K. R. Rajayal, Jiří Černý, Lada Biedermannová, Hana Petroková, Milan Kuchař, Jiřı́ Vondrášek, Petr Malý, Peter Šebo, Bohdan Schneider	2013	9
12	A Single Mutation in a Tunnel to the Active Site Changes the Mechanism and Kinetics of Product Release in Haloalkane Dehalogenase LinB Journal of Biological Chemistry ·Lada Biedermannová, Zbyněk Prokop, Artur Góra, Eva Chovancová, Mihály Kovács, Jiřı́ Damborský, Rebecca C. Wade	2012	63
13	Software tools for identification, visualization and analysis of protein tunnels and channels Biotechnology Advances ·Jan Brezovský, Eva Chovancová, Artur Góra, Antonín Pavelka, Lada Biedermannová, Jiřı́ Damborský	2012	68
14	CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures PLoS Computational Biology ·Eva Chovancová, Antonín Pavelka, Petr Beneš, Ondřej Strnad, Jan Brezovský, Barbora Kozlíková, Artur Góra, Vilém Šustr, Martin Klvaňa, Petr Medek, Lada Biedermannová, Jiří Sochor, Jiřı́ Damborský Hit paper breakdown →	2012	1032
15	Novel high‐affinity binders of human interferon gamma derived from albumin‐binding domain of protein G Proteins Structure Function and Bioinformatics ·Mehmet Altan, Jinɡjinɡ Li, Lada Biedermannová, Milan Kuchař, Hana Šípová, Beatriz Saavedra, Jiří Černý, Hana Petroková, A. K. R. Rajayal, Tine Derre, Ondřej Staněk, Jiřı́ Vondrášek, Jiřı́ Homola, Jan Malý, Radim Osička, Peter Šebo, Petr Malý	2011	32
16	CAVER 2.1 Petr Beneš, Barbora Kozlíková, Ondřej Strnad, Vilém Šustr, Eva Chovancová, Antonín Pavelka, Jan Brezovský, Paula Andrea Duque, Uun Badriyah, Jiří Sochor, Jiřı́ Damborský, Lada Biedermannová	2010	2
17	Another role of proline: stabilization interactions in proteins and protein complexes concerning proline and tryptophane Physical Chemistry Chemical Physics ·Lada Biedermannová, Kevin E. Riley, Karel Berka, Pavel Hobza, Jiřı́ Vondrášek	2008	73
18	Identifying stabilizing key residues in proteins using interresidue interaction energy matrix Proteins Structure Function and Bioinformatics ·Lada Biedermannová, Pavel Hobza, Jiřı́ Vondrášek	2008	34
19	On the Mechanism of Asymmetric Allylation of Aldehydes with Allyltrichlorosilanes Catalyzed by QUINOX, a Chiral Isoquinoline N-Oxide Journal of the American Chemical Society ·Andrei V. Malkov, Pedro Ramírez‐López, Lada Biedermannová, Lubomı́r Rulı́šek, L. Dufkova, Martin Kotora, Fujiang Zhu, Pavel Kočovský	2008	120
20	MedusaScore: An Accurate Force Field-Based Scoring Function for Virtual Drug Screening Journal of Chemical Information and Modeling ·Shuangye Yin, Lada Biedermannová, Jiřı́ Vondrášek, Nikolay V. Dokholyan	2008	158

About Lada Biedermannová

Lada Biedermannová is a scholar working on Molecular Biology, Spectroscopy, Materials Chemistry, Biophysics and Radiology, Nuclear Medicine and Imaging, having authored 24 papers that have together received 1.8k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (10 papers), Enzyme Structure and Function (8 papers), RNA and protein synthesis mechanisms (5 papers), DNA and Nucleic Acid Chemistry (4 papers), Monoclonal and Polyclonal Antibodies Research (4 papers), Mass Spectrometry Techniques and Applications (3 papers), Machine Learning in Materials Science (2 papers) and Hemoglobin structure and function (2 papers). The work is most often cited by research in Molecular Biology (1.2k citations), Computational Theory and Mathematics (221 citations), Pharmacology (104 citations), Biochemistry (79 citations) and Spectroscopy (164 citations). Lada Biedermannová has collaborated with scholars based in Czechia, United Kingdom and United States. Frequent co-authors include Eva Chovancová, Artur Góra, Jiřı́ Damborský, Antonín Pavelka, Jan Brezovský, Petr Beneš, Vilém Šustr, Jiří Sochor, Barbora Kozlíková and Ondřej Strnad. Their work appears in journals such as Acta Crystallographica Section D Structural Biology, Proteins Structure Function and Bioinformatics, Physical Chemistry Chemical Physics, BioMed Research International and Journal of Biological Chemistry.

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