Jiří Černý

5.4k total citations · 2 hit papers
76 papers, 4.5k citations indexed

About

Jiří Černý is a scholar working on Molecular Biology, Atomic and Molecular Physics, and Optics and Physical and Theoretical Chemistry. According to data from OpenAlex, Jiří Černý has authored 76 papers receiving a total of 4.5k indexed citations (citations by other indexed papers that have themselves been cited), including 46 papers in Molecular Biology, 18 papers in Atomic and Molecular Physics, and Optics and 15 papers in Physical and Theoretical Chemistry. Recurrent topics in Jiří Černý's work include DNA and Nucleic Acid Chemistry (17 papers), RNA and protein synthesis mechanisms (17 papers) and Advanced Chemical Physics Studies (14 papers). Jiří Černý is often cited by papers focused on DNA and Nucleic Acid Chemistry (17 papers), RNA and protein synthesis mechanisms (17 papers) and Advanced Chemical Physics Studies (14 papers). Jiří Černý collaborates with scholars based in Czechia, United Kingdom and France. Jiří Černý's co-authors include Pavel Hobza, Petr Jurečka, Jiřı́ Šponer, Dennis R. Salahub, Michal Pitoňák, Kevin E. Riley, Bohdan Schneider, Stefan Grimme, Pavel Neogrády and Jiřı́ Vondrášek and has published in prestigious journals such as Journal of the American Chemical Society, Nucleic Acids Research and The Journal of Chemical Physics.

In The Last Decade

Jiří Černý

75 papers receiving 4.5k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs

2006 1.5k citations Petr Jurečka, Jiří Černý et al. Physical Chemistry Chemical Physics profile →
Density functional theory augmented with an empirical dispersion term. Interaction energies and geometries of 80 noncovalent complexes compared with ab initio quantum mechanics calculations

2006 577 citations Petr Jurečka, Jiří Černý et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Jiří Černý Czechia	24	2.1k	1.3k	1.3k	1.0k	813	76	4.5k
Michal Pitoňák Slovakia	25	2.5k 1.2×	728 0.6×	1.5k 1.2×	1.7k 1.6×	956 1.2×	50	4.8k
Marat Valiev United States	25	2.3k 1.1×	1.0k 0.8×	810 0.6×	1.5k 1.4×	665 0.8×	74	5.5k
Stéphane Humbel France	22	1.3k 0.6×	825 0.6×	716 0.5×	918 0.9×	1.5k 1.8×	77	4.0k
José M. Lluch Spain	41	1.9k 0.9×	1.5k 1.1×	1.7k 1.3×	1.4k 1.4×	2.1k 2.5×	293	6.0k
Hans Martin Senn United Kingdom	27	1.3k 0.6×	2.1k 1.6×	676 0.5×	997 1.0×	1.5k 1.8×	55	5.2k
R.Z. Sagdeev Russia	36	1.3k 0.6×	642 0.5×	1.2k 1.0×	1.8k 1.7×	798 1.0×	276	5.2k
Vincenzo Schettino Italy	41	2.0k 0.9×	787 0.6×	1.1k 0.8×	2.0k 1.9×	1.1k 1.3×	148	5.2k
Rika Kobayashi Australia	29	1.5k 0.7×	494 0.4×	679 0.5×	990 0.9×	568 0.7×	90	3.4k
Anselm H. C. Horn Germany	25	1.0k 0.5×	1.5k 1.1×	505 0.4×	678 0.6×	765 0.9×	65	3.9k
Daniel Borgis France	39	3.6k 1.7×	941 0.7×	2.0k 1.5×	690 0.7×	523 0.6×	91	4.8k

Countries citing papers authored by Jiří Černý

Since Specialization

Citations

This map shows the geographic impact of Jiří Černý's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jiří Černý with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jiří Černý more than expected).

Fields of papers citing papers by Jiří Černý

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jiří Černý. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jiří Černý. The network helps show where Jiří Černý may publish in the future.

Co-authorship network of co-authors of Jiří Černý

This figure shows the co-authorship network connecting the top 25 collaborators of Jiří Černý. A scholar is included among the top collaborators of Jiří Černý based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jiří Černý. Jiří Černý is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Černý, Jiří, et al.. (2024). Isotopic Depletion Increases the Spatial Resolution of FPOP Top-Down Mass Spectrometry Analysis. Analytical Chemistry. 96(4). 1478–1487. 2 indexed citations

Kuchař, Milan, Leona Rašková Kafková, Jozef Škarda, et al.. (2024). Human IL-22 receptor-targeted small protein antagonist suppress murine DSS-induced colitis. Cell Communication and Signaling. 22(1). 469–469. 2 indexed citations

Petroková, Hana, Leona Rašková Kafková, Petr Kosztyu, et al.. (2024). Engineering PD-1-targeted small protein variants for in vitro diagnostics and in vivo PET imaging. Journal of Translational Medicine. 22(1). 426–426. 4 indexed citations

Lacina, Lukáš, Milan Kuchař, Leona Rašková Kafková, et al.. (2024). Small protein blockers of human IL-6 receptor alpha inhibit proliferation and migration of cancer cells. Cell Communication and Signaling. 22(1). 261–261. 6 indexed citations

Černý, Jiří, et al.. (2021). De novo detection of symmetry in cryo-EM density maps. Acta Crystallographica Section A Foundations and Advances. 77(a2). C692–C692. 1 indexed citations

Vališ, Karel, Jiří Černý, Josef Chmelı́k, et al.. (2020). Motif orientation matters: Structural characterization of TEAD1 recognition of genomic DNA. Structure. 29(4). 345–356.e8. 3 indexed citations

Kolenko, Petr, et al.. (2020). Structural variability of CG-rich DNA 18-mers accommodating double T–T mismatches. Acta Crystallographica Section D Structural Biology. 76(12). 1233–1243. 4 indexed citations

Černý, Jiří, et al.. (2020). A unified dinucleotide alphabet describing both RNA and DNA structures. Nucleic Acids Research. 48(11). 6367–6381. 30 indexed citations

Zahradník, Jiří, Petr Kolenko, Andrea Palyzová, et al.. (2018). The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form. PLoS ONE. 13(4). e0195299–e0195299. 3 indexed citations

10.

Štícha, Martin, Jiří Černý, Tomáš Mráček, et al.. (2015). Ubiquinone-binding site mutagenesis reveals the role of mitochondrial complex II in cell death initiation. Cell Death and Disease. 6(5). e1749–e1749. 51 indexed citations

11.

Vymětal, Jiří, Jiří Černý, Radka Chaloupková, et al.. (2014). Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition. Protein Engineering Design and Selection. 27(12). 463–472. 4 indexed citations

12.

Schneider, Bohdan, Jiří Černý, Daniel Svozil, et al.. (2013). Bioinformatic analysis of the protein/DNA interface. Nucleic Acids Research. 42(5). 3381–3394. 41 indexed citations

13.

Schneider, Bohdan, Jiří Černý, Daniel Svozil, et al.. (2011). Bioinformatic Analysis of the Protein/DNA Interface. Biophysical Journal. 100(3). 69a–69a. 1 indexed citations

14.

Riley, Kevin E., Michal Pitoňák, Jiří Černý, & Pavel Hobza. (2009). On the Structure and Geometry of Biomolecular Binding Motifs (Hydrogen-Bonding, Stacking, X−H···π): WFT and DFT Calculations. Journal of Chemical Theory and Computation. 6(1). 66–80. 168 indexed citations

15.

Johnson, Justin C., Millicent B. Smith, Paiboon Sreearunothai, et al.. (2009). Toward Designed Singlet Fission: Electronic States and Photophysics of 1,3-Diphenylisobenzofuran. The Journal of Physical Chemistry A. 114(3). 1457–1473. 91 indexed citations

16.

Tong, Xin, Jiří Černý, Klaus Müller‐Dethlefs, & Caroline E. H. Dessent. (2008). Effect of Noncovalent Interactions on Conformers of the n-Butylbenzene Monomer Studied by Mass Analyzed Threshold Ionization Spectroscopy and Basis-set Convergent ab initio Computations. The Journal of Physical Chemistry A. 112(26). 5866–5871. 14 indexed citations

17.

Černý, Jiří, Xin Tong, Pavel Hobza, & Klaus Müller‐Dethlefs. (2008). Competition between stacking and hydrogen bonding: theoretical study of the phenol⋯Ar cation and neutral complex and comparison to experiment. Physical Chemistry Chemical Physics. 10(19). 2780–2780. 21 indexed citations

18.

Černý, Jiří, Petr Jurečka, Pavel Hobza, & Haydée Valdés. (2007). Resolution of Identity Density Functional Theory Augmented with an Empirical Dispersion Term (RI-DFT-D): A Promising Tool for Studying Isolated Small Peptides. The Journal of Physical Chemistry A. 111(6). 1146–1154. 63 indexed citations

19.

Bronowska, Agnieszka K., Jiřı́ Vondrášek, Jiří Černý, et al.. (2006). Thermodynamic Penalty Arising from Burial of a Ligand Polar Group Within a Hydrophobic Pocket of a Protein Receptor. Journal of Molecular Biology. 362(5). 994–1003. 35 indexed citations

20.

Černý, Jiří, et al.. (1986). A novel idiotopic determinant on phosphorylcholine-binding immunoglobulins restricted to isotype and allotype.. The Journal of Immunology. 136(10). 3729–3733. 7 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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