Kushal K. Dey

5.2k citations

30 papers · 1.3k indexed · h-index 18

Genetics top 10%
- Genetic Associations and Epidemiology 9
- Genomics and Rare Diseases 3
Nuclear Energy and Engineering
Molecular Biology
- Single-cell and spatial transcriptomics 8
- Bioinformatics and Genomic Networks 5
- Gene expression and cancer classification 4
- Molecular Biology Techniques and Applications 3
- Genomics and Chromatin Dynamics 3
Aging
Biophysics top 10%
Materials Chemistry
- Nanoparticles: synthesis and applications 5

Co-authors: Matthew Stephens Arunava Goswami Saheli Pradhan Prasun Patra Shouvik Mitra Alkes L. Price Karthik A. Jagadeesh P. Palit
Cited by: Genetics Nuclear Energy and Engineering Molecular Biology
Journals: Nature (2 papers)Nature Communications (4 papers)Nature Genetics (7 papers)
Partner nations: United States India United Kingdom

In The Last Decade

Kushal K. Dey

28 papers receiving 1.3k citations

Peers

Countries citing papers authored by Kushal K. Dey

Since Specialization

Citations

This map shows the geographic impact of Kushal K. Dey's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Kushal K. Dey with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Kushal K. Dey more than expected).

Fields of papers citing papers by Kushal K. Dey

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Kushal K. Dey. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Kushal K. Dey. The network helps show where Kushal K. Dey may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Kushal K. Dey, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Kushal K. Dey Line = papers co-authored together Kushal K. Dey links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Population-scale sequencing resolves determinants of persistent EBV DNA Nature ·Sherry S. Y. Nyeo,Erin M. Cumming,Oliver S. Burren,Meghana S. Pagadala,Jacob C. Gutierrez,Thahmina A. Ali,Laura C. Kida,Yifan Chen,Hoyin Chu,Fengyuan Hu,Xueqing Zoe Zou,Benjamin Hollis,Margarete A. Fabre,Stewart MacArthur,Q. Wang,Leif S Ludwig,Kushal K. Dey,(unknown),Ryan S. Dhindsa,Caleb Lareau	2026	0
2	Linking regulatory variants to target genes by integrating single-cell multiome methods and genomic distance Nature Genetics ·Elizabeth Dorans,Karthik A. Jagadeesh,Kushal K. Dey,Alkes L. Price	2025	2
3	Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis Nature Genetics ·Sneha Mitra,Ro Malik,Wilfred Wong,A. Rahman,Alexander J. Hartemink,Yuri Pritykin,Kushal K. Dey,Christina S. Leslie	2024	16
4	Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types Nature Communications ·Samuel S. Kim,Buu Truong,Karthik A. Jagadeesh,Kushal K. Dey,Amber Shen,Soumya Raychaudhuri,Manolis Kellis,Alkes L. Price	2024	16
5	CRISPR screening uncovers a long-range enhancer for ONECUT1 in pancreatic differentiation and links a diabetes risk variant Cell Reports ·Samuel J. Kaplan,Wilfred Wong,Jielin Yan,Julián Pulecio,Hyunwoo Cho,Qianzi Li,Jiahui Zhao,Jayanti Leslie-Iyer,Jonathan Kazakov,Dylan Murphy,Renhe Luo,Kushal K. Dey,Effie Apostolou,Christina S. Leslie,Danwei Huangfu	2024	3
6	Polygenic architecture of rare coding variation across 394,783 exomes Nature ·Daniel J. Weiner,Ajay Nadig,Karthik A. Jagadeesh,Kushal K. Dey,Benjamin M. Neale,Elise Robinson,Konrad J. Karczewski,Luke J. O’Connor	2023	68
7	Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity Nature Genetics ·Steven Gazal,Omer Weissbrod,Farhad Hormozdiari,Kushal K. Dey,Joseph Nasser,Karthik A. Jagadeesh,Daniel J. Weiner,Huwenbo Shi,Charles P. Fulco,Luke J. O’Connor,Bogdan Paşaniuc,J Engreitz,Alkes L. Price	2022	73
8	Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data Nature Genetics ·Martin Jinye Zhang,Kangcheng Hou,Kushal K. Dey,Saori Sakaue,Karthik A. Jagadeesh,Kathryn Weinand,Aris Taychameekiatchai,Poorvi Rao,Angela Oliveira Pisco,James Zou,Bruce Wang,Michael J. Gandal,Soumya Raychaudhuri,Bogdan Paşaniuc,Alkes L. Price	2022	92
9	SAIGE-GENE+ improves the efficiency and accuracy of set-based rare variant association tests Nature Genetics ·Wei Zhou,Wenjian Bi,Zhangchen Zhao,Kushal K. Dey,Karthik A. Jagadeesh,Konrad J. Karczewski,Mark J. Daly,Benjamin M. Neale,Seunggeun Lee	2022	51
10	SNP-to-gene linking strategies reveal contributions of enhancer-related and candidate master-regulator genes to autoimmune disease Cell Genomics ·Kushal K. Dey,Steven Gazal,Bryce van de Geijn,Samuel S. Kim,Joseph Nasser,J Engreitz,Alkes L. Price	2022	14
11	Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics Nature Genetics ·Karthik A. Jagadeesh,Kushal K. Dey,Daniel T. Montoro,Rahul Mohan,Steven Gazal,J Engreitz,Ramnik J. Xavier,Alkes L. Price,Aviv Regev	2022	99
12	Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease Nature Communications ·Samuel S. Kim,Kushal K. Dey,Omer Weissbrod,Carla Márquez‐Luna,Steven Gazal,Alkes L. Price	2020	9
13	Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements Nature Genetics ·Tiffany Amariuta,Kazuyoshi Ishigaki,Hiroki Sugishita,Tazro Ohta,Masaru Koido,Kushal K. Dey,Koichi Matsuda,Yoshinori Murakami,Alkes L. Price,Eiryo Kawakami,Chikashi Terao,Soumya Raychaudhuri	2020	100
14	Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis Genome Research ·Chiaowen Joyce Hsiao,Po‐Yuan Tung,John Blischak,Jonathan E. Burnett,Kenneth Barr,Kushal K. Dey,Matthew Stephens,Yoav Gilad	2020	45
15	Regional influences on community structure across the tropical-temperate divide Nature Communications ·Alexander E. White,Kushal K. Dey,Dhananjai Mohan,Matthew Stephens,Trevor D. Price	2019	36
16	Inference and visualization of DNA damage patterns using a grade of membership model Bioinformatics ·Hussein Al-Asadi,Kushal K. Dey,John Novembre,Matthew Stephens	2018	4
17	A new sequence logo plot to highlight enrichment and depletion BMC Bioinformatics ·Kushal K. Dey,Dongyue Xie,Matthew Stephens	2018	29
18	Visualizing the structure of RNA-seq expression data using grade of membership models PLoS Genetics ·Kushal K. Dey,Chiaowen Joyce Hsiao,Matthew Stephens	2017	85
19	Microwave synthesis of ZnO@mSiO2 for detailed antifungal mode of action study: Understanding the insights into oxidative stress Journal of Colloid and Interface Science ·Shouvik Mitra,Prasun Patra,Saheli Pradhan,Nitai Debnath,Kushal K. Dey,Sampad Sarkar,Dhrubajyoti Chattopadhyay,Arunava Goswami	2014	27
20	Manganese Nanoparticles: Impact on Non-nodulated Plant as a Potent Enhancer in Nitrogen Metabolism and Toxicity Study both in Vivo and in Vitro Journal of Agricultural and Food Chemistry ·Saheli Pradhan,Prasun Patra,Shouvik Mitra,Kushal K. Dey,S. L. Jain,S K Sarkar,Shuvrodeb Roy,P. Palit,Arunava Goswami	2014	75

About Kushal K. Dey

Kushal K. Dey is a scholar working on Genetics, Molecular Biology and Ecological Modeling, having authored 30 papers that have together received 1.3k indexed citations. Recurring topics across this work include Genetic Associations and Epidemiology (9 papers), Single-cell and spatial transcriptomics (8 papers), Bioinformatics and Genomic Networks (5 papers), Nanoparticles: synthesis and applications (5 papers), Gene expression and cancer classification (4 papers), Genomics and Rare Diseases (3 papers), Molecular Biology Techniques and Applications (3 papers) and Genomics and Chromatin Dynamics (3 papers). The work is most often cited by research in Genetics (338 citations), Nuclear Energy and Engineering (4 citations) and Molecular Biology (568 citations). Kushal K. Dey has collaborated with scholars based in United States, India and United Kingdom. Frequent co-authors include Matthew Stephens, Arunava Goswami, Saheli Pradhan, Prasun Patra, Shouvik Mitra, Alkes L. Price, Karthik A. Jagadeesh, P. Palit, Chiaowen Joyce Hsiao and Sourov Chandra. Their work appears in journals such as Nature, Nature Communications and Nature Genetics.

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