Joseph N. Paulson

13.6k total citations · 5 hit papers
66 papers, 6.5k citations indexed

About

Joseph N. Paulson is a scholar working on Molecular Biology, Pathology and Forensic Medicine and Cancer Research. According to data from OpenAlex, Joseph N. Paulson has authored 66 papers receiving a total of 6.5k indexed citations (citations by other indexed papers that have themselves been cited), including 34 papers in Molecular Biology, 12 papers in Pathology and Forensic Medicine and 12 papers in Cancer Research. Recurrent topics in Joseph N. Paulson's work include Gut microbiota and health (15 papers), Gene expression and cancer classification (12 papers) and Lymphoma Diagnosis and Treatment (12 papers). Joseph N. Paulson is often cited by papers focused on Gut microbiota and health (15 papers), Gene expression and cancer classification (12 papers) and Lymphoma Diagnosis and Treatment (12 papers). Joseph N. Paulson collaborates with scholars based in United States, Switzerland and Canada. Joseph N. Paulson's co-authors include Héctor Corrada Bravo, Mihai Pop, O. Colin Stine, Roberto Kolter, Ben Niu, John Quackenbush, Marieke L. Kuijjer, Lauren J. McIver, Emma Schwager and Curtis Huttenhower and has published in prestigious journals such as Science, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

In The Last Decade

Joseph N. Paulson

66 papers receiving 6.4k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Differential abundance analysis for microbial marker-gene surveys

2013 1.6k citations Joseph N. Paulson, O. Colin Stine et al. Nature Methods profile →
Multivariable association discovery in population-scale meta-omics studies

2021 1.3k citations Joseph N. Paulson, Héctor Corrada Bravo et al. profile →
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

2019 744 citations Víctor J. Carrión, Juan E. Pérez‐Jaramillo et al. Science profile →
Simplified and representative bacterial community of maize roots

2017 482 citations Ben Niu, Joseph N. Paulson et al. Proceedings of the National Academy of Sciences profile →
Polatuzumab Vedotin in Relapsed or Refractory Diffuse Large B-Cell Lymphoma

2019 459 citations Joseph N. Paulson et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Joseph N. Paulson United States	24	3.1k	1.5k	924	635	501	66	6.5k
Jian Ye China	15	3.3k 1.1×	1.0k 0.7×	807 0.9×	263 0.4×	217 0.4×	37	6.6k
Jianxin Liu China	53	3.8k 1.2×	1.4k 0.9×	576 0.6×	260 0.4×	475 0.9×	483	11.0k
Jürgen Berger Germany	50	4.6k 1.5×	1.4k 0.9×	569 0.6×	852 1.3×	441 0.9×	117	11.6k
Christian Ramakers Netherlands	20	3.1k 1.0×	1.7k 1.1×	472 0.5×	326 0.5×	445 0.9×	56	6.6k
James Borneman United States	42	3.1k 1.0×	1.7k 1.1×	1.4k 1.5×	178 0.3×	338 0.7×	113	6.3k
Wenli Tang China	16	5.4k 1.7×	839 0.6×	327 0.4×	1.0k 1.6×	667 1.3×	38	9.7k
Lutz Krause Australia	44	3.2k 1.0×	493 0.3×	1.9k 2.0×	262 0.4×	510 1.0×	82	6.3k
Nielson T. Baxter United States	16	4.5k 1.4×	616 0.4×	1.7k 1.8×	518 0.8×	848 1.7×	21	7.9k
Jason E. Fish Canada	38	6.2k 2.0×	508 0.3×	1.5k 1.7×	373 0.6×	636 1.3×	76	10.1k

Countries citing papers authored by Joseph N. Paulson

Since Specialization

Citations

This map shows the geographic impact of Joseph N. Paulson's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Joseph N. Paulson with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Joseph N. Paulson more than expected).

Fields of papers citing papers by Joseph N. Paulson

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Joseph N. Paulson. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Joseph N. Paulson. The network helps show where Joseph N. Paulson may publish in the future.

Co-authorship network of co-authors of Joseph N. Paulson

This figure shows the co-authorship network connecting the top 25 collaborators of Joseph N. Paulson. A scholar is included among the top collaborators of Joseph N. Paulson based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Joseph N. Paulson. Joseph N. Paulson is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Paulson, Joseph N., Herman P. Spaink, Dennis Claessen, et al.. (2024). bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteria. Nature Communications. 15(1). 12 indexed citations

Nabbi, Arash, Arnavaz Danesh, Osvaldo Espin‐Garcia, et al.. (2023). Multimodal immunogenomic biomarker analysis of tumors from pediatric patients enrolled to a phase 1-2 study of single-agent atezolizumab. Nature Cancer. 4(4). 502–515. 5 indexed citations

Oyserman, Ben O., Joseph N. Paulson, Mercedeh Movassagh, et al.. (2022). Disentangling the genetic basis of rhizosphere microbiome assembly in tomato. Nature Communications. 13(1). 93 indexed citations

Skoufos, Giorgos, Fatemeh Almodaresi, Mohsen Zakeri, et al.. (2022). AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite. Genome biology. 23(1). 39–39. 5 indexed citations

Kumar, M. S. Binoj, Eric Slud, Christine Hehnly, et al.. (2022). Differential richness inference for 16S rRNA marker gene surveys. Genome biology. 23(1). 166–166. 4 indexed citations

Hehnly, Christine, Aiqin Shi, Paddy Ssentongo, et al.. (2022). Type IV Pili Are a Critical Virulence Factor in Clinical Isolates of Paenibacillus thiaminolyticus. mBio. 13(6). e0268822–e0268822. 3 indexed citations

Paulson, Joseph N., Francis Okello, Frances M. Cowan, et al.. (2021). Intraventricular haemorrhage in a Ugandan cohort of low birth weight neonates: the IVHU study. BMC Pediatrics. 21(1). 12–12. 16 indexed citations

Carrión, Víctor J., Juan E. Pérez‐Jaramillo, Viviane Cordovez, et al.. (2019). Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. Science. 366(6465). 606–612. 744 indexed citations breakdown →

Olson, Nathan D., et al.. (2019). metagenomeFeatures : an R package for working with 16S rRNA reference databases and marker-gene survey feature data. Bioinformatics. 35(19). 3870–3872. 3 indexed citations

10.

Shapiro, Lori R., Joseph N. Paulson, Brian Arnold, et al.. (2018). An Introduced Crop Plant Is Driving Diversification of the Virulent Bacterial Pathogen Erwinia tracheiphila. mBio. 9(5). 22 indexed citations

11.

Hong, Bo‐Young, Joseph N. Paulson, O. Colin Stine, George M. Weinstock, & Jorge Cervantes. (2018). Meta-analysis of the lung microbiota in pulmonary tuberculosis. Tuberculosis. 109. 102–108. 49 indexed citations

12.

Niu, Ben, et al.. (2017). Simplified and representative bacterial community of maize roots. Proceedings of the National Academy of Sciences. 114(12). E2450–E2459. 482 indexed citations breakdown →

13.

Sonawane, Abhijeet R., John Platig, Maud Fagny, et al.. (2017). Understanding Tissue-Specific Gene Regulation. Cell Reports. 21(4). 1077–1088. 248 indexed citations

14.

Damgaard, Mads V., Marianne Agerholm, Joseph N. Paulson, et al.. (2017). Age-dependent alterations of glucose clearance and homeostasis are temporally separated and modulated by dietary fat. The Journal of Nutritional Biochemistry. 54. 66–76. 8 indexed citations

15.

Paulson, Joseph N., Cho-Yi Chen, Camila M. Lopes‐Ramos, et al.. (2017). Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. BMC Bioinformatics. 18(1). 437–437. 30 indexed citations

16.

Wagner, Justin, Joseph N. Paulson, Xiao Wang, Bobby Bhattacharjee, & Héctor Corrada Bravo. (2016). Privacy-preserving microbiome analysis using secure computation. Bioinformatics. 32(12). 1873–1879. 14 indexed citations

17.

Morris, Alison, Joseph N. Paulson, Laura Tipton, et al.. (2016). Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection. Microbiome. 4(1). 38–38. 35 indexed citations

18.

Carrillo, José A., Yanghua He, Juan Luo, et al.. (2015). Methylome Analysis in Chickens Immunized with Infectious Laryngotracheitis Vaccine. PLoS ONE. 10(6). e0100476–e0100476. 7 indexed citations

19.

Paulson, Joseph N., O. Colin Stine, Héctor Corrada Bravo, & Mihai Pop. (2013). Differential abundance analysis for microbial marker-gene surveys. Nature Methods. 10(12). 1200–1202. 1641 indexed citations breakdown →

20.

Paulson, Joseph N., Mihai Pop, & Héctor Corrada Bravo. (2011). Metastats: an improved statistical method for analysis of metagenomic data. Genome biology. 12(S1). 16 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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