Mohsen Zakeri

573 total citations
12 papers, 180 citations indexed

About

Mohsen Zakeri is a scholar working on Molecular Biology, Artificial Intelligence and Genetics. According to data from OpenAlex, Mohsen Zakeri has authored 12 papers receiving a total of 180 indexed citations (citations by other indexed papers that have themselves been cited), including 10 papers in Molecular Biology, 3 papers in Artificial Intelligence and 3 papers in Genetics. Recurrent topics in Mohsen Zakeri's work include Genomics and Phylogenetic Studies (7 papers), Molecular Biology Techniques and Applications (3 papers) and Algorithms and Data Compression (3 papers). Mohsen Zakeri is often cited by papers focused on Genomics and Phylogenetic Studies (7 papers), Molecular Biology Techniques and Applications (3 papers) and Algorithms and Data Compression (3 papers). Mohsen Zakeri collaborates with scholars based in United States, Switzerland and Canada. Mohsen Zakeri's co-authors include Rob Patro, Avi Srivastava, Fatemeh Almodaresi, Hirak Sarkar, Charlotte Soneson, Laraib Malik, Michael I. Love, Carl Kingsford, Dongze He and Ben Langmead and has published in prestigious journals such as Nature Communications, Bioinformatics and Nature Methods.

In The Last Decade

Mohsen Zakeri

10 papers receiving 178 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Mohsen Zakeri United States	6	142	31	19	18	17	12	180
Ruoyu Chen China	10	289 2.0×	24 0.8×	16 0.8×	23 1.3×	24 1.4×	18	358
Simone Tiberi Switzerland	9	177 1.2×	51 1.6×	12 0.6×	9 0.5×	15 0.9×	17	231
Carmina Angelica Perez Romero France	4	228 1.6×	27 0.9×	27 1.4×	7 0.4×	12 0.7×	5	302
David P. Argue United States	4	181 1.3×	8 0.3×	32 1.7×	17 0.9×	34 2.0×	6	266
Derek E. Kelly United States	6	91 0.6×	27 0.9×	22 1.2×	13 0.7×	78 4.6×	7	202
Dayanne M. Castro United States	4	222 1.6×	14 0.5×	12 0.6×	6 0.3×	17 1.0×	4	250
Tianming Zhou United States	7	308 2.2×	34 1.1×	26 1.4×	16 0.9×	34 2.0×	7	343
Jingxue Xin China	9	189 1.3×	46 1.5×	10 0.5×	10 0.6×	51 3.0×	15	269
Kenta Sato Japan	4	102 0.7×	21 0.7×	15 0.8×	8 0.4×	9 0.5×	7	142
Rebecca Elyanow United States	6	128 0.9×	44 1.4×	12 0.6×	6 0.3×	46 2.7×	10	174

Countries citing papers authored by Mohsen Zakeri

Since Specialization

Citations

This map shows the geographic impact of Mohsen Zakeri's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Mohsen Zakeri with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Mohsen Zakeri more than expected).

Fields of papers citing papers by Mohsen Zakeri

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Mohsen Zakeri. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Mohsen Zakeri. The network helps show where Mohsen Zakeri may publish in the future.

Co-authorship network of co-authors of Mohsen Zakeri

This figure shows the co-authorship network connecting the top 25 collaborators of Mohsen Zakeri. A scholar is included among the top collaborators of Mohsen Zakeri based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Mohsen Zakeri. Mohsen Zakeri is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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12 of 12 papers shown

Patel, Lucas, Yoshihiko Tomofuji, Antonio González, et al.. (2025). Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data. Nature Communications. 16(1). 825–825. 5 indexed citations

Zakeri, Mohsen, et al.. (2025). KeBaB: k-mer Based Breaking for Finding Long MEMs. Lecture notes in computer science. 16073. 10–17.

Majidian, Sina, Stephen Hwang, Mohsen Zakeri, & Ben Langmead. (2025). EvANI benchmarking workflow for evolutionary distance estimation. Briefings in Bioinformatics. 26(3).

Zakeri, Mohsen, et al.. (2024). Movi: A fast and cache-efficient full-text pangenome index. iScience. 27(12). 111464–111464. 6 indexed citations

Kovaka, Sam, et al.. (2024). Sigmoni: classification of nanopore signal with a compressed pangenome index. Bioinformatics. 40(Supplement_1). i287–i296. 6 indexed citations

Choi, Kwangbom, Mohsen Zakeri, Matthew Vincent, et al.. (2023). SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty. Genome biology. 24(1). 165–165. 3 indexed citations

He, Dongze, Mohsen Zakeri, Hirak Sarkar, et al.. (2022). Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data. Nature Methods. 19(3). 316–322. 43 indexed citations

Skoufos, Giorgos, Fatemeh Almodaresi, Mohsen Zakeri, et al.. (2022). AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite. Genome biology. 23(1). 39–39. 5 indexed citations

Almodaresi, Fatemeh, Mohsen Zakeri, & Rob Patro. (2021). PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index. Bioinformatics. 37(22). 4048–4055. 15 indexed citations

10.

Srivastava, Avi, Laraib Malik, Hirak Sarkar, et al.. (2020). Alignment and mapping methodology influence transcript abundance estimation. Genome biology. 21(1). 239–239. 80 indexed citations

11.

Sarkar, Hirak, Mohsen Zakeri, Laraib Malik, & Rob Patro. (2018). Towards Selective-Alignment. 27–36. 3 indexed citations

12.

Zakeri, Mohsen, Avi Srivastava, Fatemeh Almodaresi, & Rob Patro. (2017). Improved data-driven likelihood factorizations for transcript abundance estimation. Bioinformatics. 33(14). i142–i151. 14 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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