Jonathan Crabtree

18.4k total citations · 2 hit papers
38 papers, 4.0k citations indexed

About

Jonathan Crabtree is a scholar working on Molecular Biology, Infectious Diseases and Plant Science. According to data from OpenAlex, Jonathan Crabtree has authored 38 papers receiving a total of 4.0k indexed citations (citations by other indexed papers that have themselves been cited), including 22 papers in Molecular Biology, 7 papers in Infectious Diseases and 7 papers in Plant Science. Recurrent topics in Jonathan Crabtree's work include Genomics and Phylogenetic Studies (15 papers), Gut microbiota and health (7 papers) and Human Motion and Animation (3 papers). Jonathan Crabtree is often cited by papers focused on Genomics and Phylogenetic Studies (15 papers), Gut microbiota and health (7 papers) and Human Motion and Animation (3 papers). Jonathan Crabtree collaborates with scholars based in United States, United Kingdom and Germany. Jonathan Crabtree's co-authors include Owen White, Joshua Orvis, Jacques Ravel, Jennifer R. Wortman, Anup Mahurkar, Rob Knight, Curtis Huttenhower, Arthur Brady, David A. Rasko and Michelle Giglio and has published in prestigious journals such as Nature, Nucleic Acids Research and Nature Communications.

In The Last Decade

Jonathan Crabtree

37 papers receiving 3.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Strains, functions and dynamics in the expanded Human Microbiome Project

2017 804 citations Jason Lloyd‐Price, Anup Mahurkar et al. Nature profile →
The Pangenome Structure ofEscherichia coli: Comparative Genomic Analysis ofE. coliCommensal and Pathogenic Isolates

2008 598 citations David A. Rasko, W. Florian Fricke et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Jonathan Crabtree United States	24	2.4k	948	638	434	422	38	4.0k
Sun Kim United States	27	1.4k 0.6×	1.0k 1.1×	634 1.0×	697 1.6×	254 0.6×	81	3.2k
Alejandro Reyes Colombia	30	2.7k 1.1×	598 0.6×	1.2k 1.8×	510 1.2×	311 0.7×	94	5.9k
Brian Ondov United States	15	2.9k 1.2×	787 0.8×	666 1.0×	490 1.1×	665 1.6×	22	5.3k
Jean‐Yves Coppée France	45	3.5k 1.4×	761 0.8×	1.4k 2.1×	798 1.8×	745 1.8×	119	6.8k
Breck A. Duerkop United States	28	2.0k 0.8×	359 0.4×	758 1.2×	428 1.0×	306 0.7×	46	3.3k
Steven H. Hinrichs United States	37	1.9k 0.8×	670 0.7×	1.2k 1.9×	942 2.2×	201 0.5×	139	6.8k
Fuquan Hu China	31	2.2k 0.9×	804 0.8×	602 0.9×	342 0.8×	390 0.9×	80	4.2k
Danielle A. Garsin United States	29	2.6k 1.1×	255 0.3×	1.1k 1.8×	416 1.0×	374 0.9×	61	4.9k
Marie‐Agnès Dillies France	28	1.9k 0.8×	437 0.5×	535 0.8×	342 0.8×	341 0.8×	48	3.6k
Vinod Nair United States	34	1.5k 0.6×	362 0.4×	849 1.3×	981 2.3×	289 0.7×	86	3.5k

Countries citing papers authored by Jonathan Crabtree

Since Specialization

Citations

This map shows the geographic impact of Jonathan Crabtree's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan Crabtree with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan Crabtree more than expected).

Fields of papers citing papers by Jonathan Crabtree

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan Crabtree. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan Crabtree. The network helps show where Jonathan Crabtree may publish in the future.

Co-authorship network of co-authors of Jonathan Crabtree

This figure shows the co-authorship network connecting the top 25 collaborators of Jonathan Crabtree. A scholar is included among the top collaborators of Jonathan Crabtree based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jonathan Crabtree. Jonathan Crabtree is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Munro, James B., Sushma Nagaraj, Jonathan Crabtree, et al.. (2023). The Hypervariable Tpr Multigene Family of Theileria Parasites, Defined by a Conserved, Membrane-Associated, C-Terminal Domain, Includes Several Copies with Defined Orthology Between Species. Journal of Molecular Evolution. 91(6). 897–911.

Chuang, Nelson T., Eugene J. Gardner, Jonathan Crabtree, et al.. (2021). Mutagenesis of human genomes by endogenous mobile elements on a population scale. Genome Research. 31(12). 2225–2235. 15 indexed citations

Tretina, Kyle, Joshua Orvis, Jonathan Crabtree, et al.. (2020). Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity. PLoS neglected tropical diseases. 14(10). e0008781–e0008781. 6 indexed citations

Ma, Bing, Michael France, Jonathan Crabtree, et al.. (2020). A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina. Nature Communications. 11(1). 940–940. 103 indexed citations

Robinson, Kelly, Jonathan Crabtree, John S. Mattick, Kathleen E. Anderson, & Julie C. Dunning Hotopp. (2017). Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data. Microbiome. 5(1). 9–9. 64 indexed citations

Lloyd‐Price, Jason, Anup Mahurkar, Ali Rahnavard, et al.. (2017). Strains, functions and dynamics in the expanded Human Microbiome Project. Nature. 550(7674). 61–66. 804 indexed citations breakdown →

Sinha, Rashmi, Galeb Abu-Ali, Emily Vogtmann, et al.. (2017). Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium. Nature Biotechnology. 35(11). 1077–1086. 314 indexed citations

Agrawal, Sonia, Cesar Arze, Ricky S. Adkins, et al.. (2017). CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline. BMC Genomics. 18(1). 332–332. 13 indexed citations

Chibucos, Marcus C., Sameh S. M. Soliman, Teclegiorgis Gebremariam, et al.. (2016). An integrated genomic and transcriptomic survey of mucormycosis-causing fungi. Nature Communications. 7(1). 12218–12218. 92 indexed citations

10.

Nitsche, Benjamin M., Jonathan Crabtree, Gustavo Cerqueira, et al.. (2011). New resources for functional analysis of omics data for the genus Aspergillus. BMC Genomics. 12(1). 486–486. 24 indexed citations

11.

Chan, Agnes P., Jonathan Crabtree, Qi Zhao, et al.. (2010). Draft genome sequence of the oilseed species Ricinus communis. Nature Biotechnology. 28(9). 951–956. 366 indexed citations

12.

Arnaud, Martha B., Marcus C. Chibucos, Maria C. Costanzo, et al.. (2009). The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. Nucleic Acids Research. 38(suppl_1). D420–D427. 99 indexed citations

13.

Fedorova, Natalie D., Jonathan Crabtree, Yan Yu, et al.. (2008). Sub-Telomere Directed Gene Expression during Initiation of Invasive Aspergillosis. PLoS Pathogens. 4(9). e1000154–e1000154. 202 indexed citations

14.

Yuan, Lin, Pauline C. Ng, Timothy B. Stockwell, et al.. (2008). The HuRef Browser: a web resource for individual human genomics. Nucleic Acids Research. 37(suppl_1). D1018–D1024. 10 indexed citations

15.

Mahurkar, Anup, et al.. (2008). IDEA: Interactive Display for Evolutionary Analyses. BMC Bioinformatics. 9(1). 524–524. 19 indexed citations

16.

Town, Christopher D., Foo Cheung, Rama Maiti, et al.. (2006). Comparative Genomics of Brassica oleracea and Arabidopsis thaliana Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy. The Plant Cell. 18(6). 1348–1359. 319 indexed citations

17.

Wortman, Jennifer R., Jonathan Crabtree, Vinita Joardar, et al.. (2006). Whole genome comparison of theA. fumigatusfamily. Medical Mycology. 44(s1). 3–7. 37 indexed citations

18.

Crabtree, Jonathan, et al.. (1999). bioWidgets: data interaction components for genomics.. Bioinformatics. 15(10). 837–846. 8 indexed citations

19.

Bailey, L. Charles, et al.. (1998). GAIA: Framework Annotation of Genomic Sequence. Genome Research. 8(3). 234–250. 36 indexed citations

20.

Granieri, John P., Jonathan Crabtree, & Norman I. Badler. (1995). Production and playback of human figure motion for visual simulation. ACM Transactions on Modeling and Computer Simulation. 5(3). 222–241. 13 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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