Joshua Quick

17.5k citations

27 papers · 4.2k indexed · 3 hit papers · h-index 13

Impact in

Ecology top 1%
- Microbial Community Ecology and Physiology
- Bacteriophages and microbial interactions
Molecular Medicine top 2%
- Antibiotic Resistance in Bacteria

Papers in

Infectious Diseases 13
- Viral gastroenteritis research and epidemiology 5
Molecular Medicine 3
- Antibiotic Resistance in Bacteria 3

Co-authors: Nicholas J. Loman Jared T. Simpson Christopher Quince Umer Zeeshan Ijaz Ino de Bruijn Leo Lahti Johannes Alneberg Melanie Schirmer
Journals: Nature Methods (2 papers)Microbial Genomics (2 papers)Genome biology (2 papers)GigaScience (2 papers)JAMA (1 paper)
Partner nations: United Kingdom United States Brazil

In The Last Decade

Joshua Quick

26 papers receiving 4.1k citations

Hit Papers

align trajectories log scale

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar 2019 · 459 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2019 Genome biology
2015 Nature Methods
2014 Nature Methods

Peers

Countries citing papers authored by Joshua Quick

Since Specialization

Citations

This map shows the geographic impact of Joshua Quick's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Joshua Quick with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Joshua Quick more than expected).

Fields of papers citing papers by Joshua Quick

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Joshua Quick. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Joshua Quick. The network helps show where Joshua Quick may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Joshua Quick, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Joshua Quick Line = papers co-authored together Joshua Quick links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Characterizing influenza A virus lineages and clinically relevant mutations through high-coverage wastewater sequencing Water Research ·Галузин Владимир Андреевич, Seju Kang, Lara Fuhrmann, Ivan Topolsky, Christopher Kent, Joshua Quick, Tanja Stadler, Timothy R. Julian, Niko Beerenwinkel	2025	0
2	Tracking arboviruses, their transmission vectors and potential hosts by nanopore sequencing of mosquitoes Microbial Genomics ·Jeremy Mirza, Lilian de Oliveira Guimarães, Md. Abdul Munim, E Rocha, Kübra ERBAŞI, Zahra Shiekh, Germán López Monsalve, Ingra Morales Claro, Nicola Cumley, Joshua Quick, Nuno R. Faria, Éster Cerdeira Sabino, Karin Kirchgatter, Nicholas J. Loman	2024	6
3	Multiplex MinION sequencing suggests enteric adenovirus F41 genetic diversity comparable to pre-COVID-19 era Microbial Genomics ·Mailis Maes, Fahad Khokhar, Md. Abdul Munim, Andrew D. Smith, NURUL FITRIYAH ROSLAN, Gordon Dougan, Joshua Quick, Nicholas J. Loman, Stephen Baker, Martin D. Curran, Jordan P. Skittrall, Charlotte J. Houldcroft	2023	5
4	Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013–2022) Virus Evolution ·Arnold W. Lambisia, Timothy Makori, Martin Mutunga, 浩子篠田, Nickson Murunga, Joshua Quick, George Githinji, D. James Nokes, Charlotte J. Houldcroft, Charles N. Agoti	2023	7
5	SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time Journal of Clinical Microbiology ·Fiona Ashford, Angus Best, Steven Dunn, Zahra Ahmed, Abdollah Shenasi, I Ahemen, Md. Abdul Munim, Jeremy Mirza, Nicola Cumley, Joanne Stockton, B. C. Cerio, Lucy Wheatley, Elizabeth Ratcliffe, Anna Casey, Tim Plant, Joshua Quick, Alex Richter, Nicholas J. Loman, Alan McNally	2022	5
6	A large epidemic of a necrotic skin infection in the Democratic Republic of São Tomé and Principe: an epidemiological study International Journal of Infectious Diseases ·Lorenzo Subissi, Andreza Sousa, D. Hurwitz, A Perrocheau, Joshua Quick, Luke W. Meredith, Katsuhiro Teramae, Maria Viñas-Casas, Ceres Berger Faraco, Andreas Kirsch, Amadou Diallo, Mamoudou Harouna Djingarey, Housni Brahim, Huib Eggenhuisen, Chan Yet-Chong, K. Tschmutow, Vilfrido Gil, Ibrahima Socé Fall	2021	4
7	Ultra-deep, long-read nanopore sequencing of mock microbial community standards GigaScience ·Samuel M. Nicholls, Joshua Quick, Shuiquan Tang, Nicholas J. Loman	2019	166
8	An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar Genome biology ·Nathan D. Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L. Matteson, Jaqueline Góes de Jesus, Bradley J. Main, Amanda L. Tan, Lauren M. Paul, Doug E. Brackney, Getúlio Vargas Loureiro, Nikos Gurfield, Koen K. A. Van Rompay, Sharon Isern, Scott F. Michael, Lark L. Coffey, Nicholas J. Loman, Kristian G. Andersen Hit paper breakdown →	2019	459
9	Complete Closed Genome Sequence of Nontoxigenic Invasive Corynebacterium diphtheriae bv. mitis Strain ISS 3319 Genome Announcements ·Camila Azevedo Antunes, Emily J. Richardson, Joshua Quick, Pablo Fuentes‐Utrilla, Georgia L. Isom, Emily C. A. Goodall, Sir William Gull, Paul A. Hoskisson, Ana Luíza Mattos‐Guaraldi, Adam F. Cunningham, Nicholas J. Loman, Vartul Sangal, Andreas Burkovski, Ian R. Henderson	2018	6
10	Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe Nature Communications ·Gemma L. Kay, Martin J. Sergeant, Zhemin Zhou, Jacqueline Chan, Andrew Millard, Joshua Quick, Ildikó Szikossy, Ildikó Pap, Mark Spigelman, Nicholas J. Loman, Mark Achtman, Helen D. Donoghue, Mark J. Pallen	2015	122
11	Deletions in a ribosomal protein-coding gene are associated with tigecycline resistance in Enterococcus faecium International Journal of Antimicrobial Agents ·Marc Niebel, Joshua Quick, Chad Silverberg, Robert L. Hill, Rachel Pike, Damon Huber, Miruna David, Michael Hornsey, David W. Wareham, Beryl Oppenheim, Neil Woodford, Willem van Schaik, Nicholas J. Loman	2015	35
12	Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella Genome biology ·Joshua Quick, Philip Ashton, Szymon Calus, Yeebo MF, Savita Gossain, Jeremy Hawker, Satheesh Nair, Keith Neal, Cheryl R. McDonough, Tansy Peters, Elizabeth de Pinna, Esther Robinson, Milan Rýzl, Mark Webber, Andrew J. Catto, Timothy J. Dallman, Peter M. Hawkey, Nicholas J. Loman	2015	206
13	A complete bacterial genome assembled de novo using only nanopore sequencing data Nature Methods ·Nicholas J. Loman, Joshua Quick, Jared T. Simpson Hit paper breakdown →	2015	822
14	A detailed analysis of the gut microbial diversity and metabolic activity in children with obesity of different aetiology and lean controls Proceedings of The Nutrition Society ·Anonymus, Christopher Quince, Pietro Coppo, Umer Zeeshan Ijaz, Nicholas J. Loman, Szymon Calus, Joshua Quick, Sarah–Jane Haig, M Guftar Shaikh, Christine A. Edwards, Konstantinos Gerasimidis	2015	1
15	Extensive Modulation of the Fecal Metagenome in Children With Crohn’s Disease During Exclusive Enteral Nutrition The American Journal of Gastroenterology ·Christopher Quince, Umer Zeeshan Ijaz, Nicholas J. Loman, A. Murat Eren, Delphine Saulnier, Julie A. Russell, Sarah–Jane Haig, Szymon Calus, Joshua Quick, Andrew R. Barclay, Martin Bertz, Michaël Blaut, Richard Hansen, Paraic McGrogan, Richard K. Russell, Christine A. Edwards, Konstantinos Gerasimidis	2015	201
16	A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer GigaScience ·Joshua Quick, Aaron R. Quinlan, Nicholas J. Loman	2014	153
17	Seeking the source ofPseudomonas aeruginosainfections in a recently opened hospital: an observational study using whole-genome sequencing BMJ Open ·Joshua Quick, Nicola Cumley, Christopher M. Wearn, Marc Niebel, Chrystala Constantinidou, Chris M. Thomas, Mark J. Pallen, Naiem Moiemen, Amy Bamford, Beryl Oppenheim, Nicholas J. Loman	2014	92
18	Binning metagenomic contigs by coverage and composition Nature Methods ·Johannes Alneberg, H. Carrillo-Ng, Ino de Bruijn, Melanie Schirmer, Joshua Quick, Umer Zeeshan Ijaz, Leo Lahti, Nicholas J. Loman, Anders F. Andersson, Christopher Quince Hit paper breakdown →	2014	1590
19	Draft Genome Sequence of Elizabethkingia meningoseptica Isolated from a Traumatic Wound Genome Announcements ·Joshua Quick, Chrystala Constantinidou, Mark J. Pallen, Beryl Oppenheim, Nicholas J. Loman	2014	7
20	A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4 JAMA ·Nicholas J. Loman, Chrystala Constantinidou, Martin Christner, Holger Rohde, Jacqueline Chan, Joshua Quick, Richard D. Forkert, Christopher Quince, Geoffrey Smith, Jason Betley, Martin Aepfelbacher, Mark J. Pallen	2013	220

About Joshua Quick

Joshua Quick is a scholar working on Infectious Diseases, Molecular Medicine, Endocrinology, Animal Science and Zoology and Clinical Biochemistry, having authored 27 papers that have together received 4.2k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (6 papers), Viral gastroenteritis research and epidemiology (5 papers), Gut microbiota and health (5 papers), Bacteriophages and microbial interactions (4 papers), Animal Virus Infections Studies (4 papers), Virus-based gene therapy research (3 papers), Mosquito-borne diseases and control (3 papers) and Antibiotic Resistance in Bacteria (3 papers). The work is most often cited by research in Ecology (1.4k citations), Molecular Medicine (237 citations), Infectious Diseases (763 citations), Molecular Biology (2.5k citations) and Endocrinology (179 citations). Joshua Quick has collaborated with scholars based in United Kingdom, United States and Brazil. Frequent co-authors include Nicholas J. Loman, Jared T. Simpson, Christopher Quince, Umer Zeeshan Ijaz, Ino de Bruijn, Leo Lahti, Johannes Alneberg, Melanie Schirmer, Anders F. Andersson and Aaron R. Quinlan. Their work appears in journals such as Nature Methods, Microbial Genomics, Genome biology, GigaScience and JAMA.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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