J. Andrew McCammon

94.1k citations

841 papers · 71.8k indexed · 20 hit papers · h-index 118

Molecular Biology top 0.01%
Materials Chemistry top 0.1%
Atomic and Molecular Physics, and Optics top 0.05%
Computational Theory and Mathematics top 0.01%
Spectroscopy top 0.02%

Co-authors: Martin Karplus Nathan Baker David Sept Michael Holst Simpson Joseph Jacob D. Durrant D.L. Ermak Michael K. Gilson
Topics: Protein Structure and Dynamics (369 papers)Spectroscopy and Quantum Chemical Studies (171 papers)Computational Drug Discovery Methods (126 papers)
Cited by: Molecular Biology Computational Theory and Mathematics Physical and Theoretical Chemistry
Journals: Nature Science Chemical Reviews
Partner nations: United States Poland Germany

In The Last Decade

J. Andrew McCammon

836 papers receiving 70.2k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Electrostatics of nanosystems: Application to microtubules and the ribosome

2001 6.1k citations J. Andrew McCammon et al. Proceedings of the National Academy of Sciences profile →
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations

2004 2.8k citations J. Andrew McCammon et al. Nucleic Acids Research profile →
Molecular dynamics simulations of biomolecules

2002 2.4k citations J. Andrew McCammon et al. profile →
Brownian dynamics with hydrodynamic interactions

1978 1.9k citations J. Andrew McCammon et al. The Journal of Chemical Physics profile →
Bio3d: an R package for the comparative analysis of protein structures

2006 1.5k citations J. Andrew McCammon et al. profile →
Dynamics of folded proteins

1977 1.3k citations J. Andrew McCammon et al. profile →
Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules

2004 1.2k citations J. Andrew McCammon et al. The Journal of Chemical Physics profile →
Dynamics of Proteins and Nucleic Acids

1988 989 citations J. Andrew McCammon et al. profile →
The statistical-thermodynamic basis for computation of binding affinities: a critical review

1997 973 citations J. Andrew McCammon et al. Biophysical Journal profile →
Molecular dynamics simulations and drug discovery

2011 924 citations Jacob D. Durrant, J. Andrew McCammon profile →
Dynamics of Proteins and Nucleic Acids

1987 914 citations J. Andrew McCammon et al. profile →
Molecular Dynamics: Survey of Methods for Simulating the Activity of Proteins

2006 908 citations J. Andrew McCammon et al. profile →
The structure of liquid water at an extended hydrophobic surface

1984 737 citations J. Andrew McCammon et al. The Journal of Chemical Physics profile →
Prediction of Ph-dependent Properties of Proteins

1994 715 citations J. Andrew McCammon et al. profile →
Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program

1995 711 citations J. Andrew McCammon et al. profile →
Gaussian Accelerated Molecular Dynamics: Unconstrained Enhanced Sampling and Free Energy Calculation

2015 584 citations Yinglong Miao, J. Andrew McCammon et al. Journal of Chemical Theory and Computation profile →
Electrostatics in biomolecular structure and dynamics

1990 556 citations J. Andrew McCammon et al. profile →
DYNAMICS OF PROTEINS: ELEMENTS AND FUNCTION

1983 550 citations J. Andrew McCammon et al. profile →
Ensemble Docking in Drug Discovery

2018 313 citations Rommie E. Amaro, J. Andrew McCammon et al. Biophysical Journal profile →
A glycan gate controls opening of the SARS-CoV-2 spike protein

2021 251 citations Terra Sztain, Surl-Hee Ahn et al. Nature Chemistry profile →

Peers

Countries citing papers authored by J. Andrew McCammon

Since Specialization

Citations

This map shows the geographic impact of J. Andrew McCammon's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by J. Andrew McCammon with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites J. Andrew McCammon more than expected).

Fields of papers citing papers by J. Andrew McCammon

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by J. Andrew McCammon. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by J. Andrew McCammon. The network helps show where J. Andrew McCammon may publish in the future.

Co-authorship network of co-authors of J. Andrew McCammon

This figure shows the co-authorship network connecting the top 25 collaborators of J. Andrew McCammon. A scholar is included among the top collaborators of J. Andrew McCammon based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with J. Andrew McCammon. J. Andrew McCammon is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	Structure and dynamics in drug discovery 2024 ·Haixin Wei,J. Andrew McCammon	10
2	Dilated cardiomyopathy mutation in beta-cardiac myosin enhances actin activation of the power stroke and phosphate release 2024 ·PNAS Nexus ·(unknown),(unknown),Wen Ma,(unknown),Rohini Desetty,J. Andrew McCammon,Christopher M. Yengo	3
3	Targeting Tuberculosis: Novel Scaffolds for Inhibiting Cytochrome bd Oxidase 2024 ·Journal of Chemical Information and Modeling ·(unknown),Surl-Hee Ahn,Haixin Wei,(unknown),Gregory M. Cook,Kurt L. Krause,J. Andrew McCammon	4
4	Stomatal CO ₂ /bicarbonate sensor consists of two interacting protein kinases, Raf-like HT1 and non-kinase-activity requiring MPK12/MPK4 2022 ·Science Advances ·Yohei Takahashi,(unknown),Po‐Kai Hsu,(unknown),(unknown),(unknown),Yuh‐Shuh Wang,Dmitry Yarmolinsky,Maija Sierla,Triin Vahisalu,Cezary Waszczak,J. Andrew McCammon,Jaakko Kangasjärvi,Lı Zhang,Hannes Kollist,(unknown),Julian I. Schroeder	39
5	Lipoprotein-associated phospholipase A ₂ : A paradigm for allosteric regulation by membranes 2022 ·Proceedings of the National Academy of Sciences ·Varnavas D. Mouchlis,Daiki Hayashi,(unknown),Jian Cao,J. Andrew McCammon,Edward A. Dennis	20
6	Data for molecular dynamics simulations of Escherichia coli cytochrome bd oxidase with the Amber force field 2021 ·SHILAP Revista de lepidopterología ·Surl-Hee Ahn,(unknown),Vinícius Wilian D. Cruzeiro,J. Andrew McCammon,Andreas W. Götz	4
7	Gaussian-Accelerated Molecular Dynamics with the Weighted Ensemble Method: A Hybrid Method Improves Thermodynamic and Kinetic Sampling 2021 ·Journal of Chemical Theory and Computation ·Surl-Hee Ahn,Anupam Anand Ojha,Rommie E. Amaro,J. Andrew McCammon	22
8	A glycan gate controls opening of the SARS-CoV-2 spike proteinbreakdown → 2021 ·Nature Chemistry ·Terra Sztain,Surl-Hee Ahn,Anthony T. Bogetti,Lorenzo Casalino,Jory A. Goldsmith,E. Seitz,Ryan S. McCool,Fiona L. Kearns,F.J. Acosta-Reyes,Suvrajit Maji,Ghoncheh Mashayekhi,J. Andrew McCammon,A. Ourmazd,Joachim Frank,Jason S. McLellan,Lillian T. Chong,Rommie E. Amaro	251
9	Characterizing protein kinase A (PKA) subunits as macromolecular regulators of PKA RIα liquid–liquid phase separation 2021 ·The Journal of Chemical Physics ·Surl-Hee Ahn,Sanbo Qin,Jason Z. Zhang,J. Andrew McCammon,Jin Zhang,Huan‐Xiang Zhou	7
10	Activation of atypical protein kinase C by sphingosine 1-phosphate revealed by an aPKC-specific activity reporter 2019 ·Science Signaling ·Taketoshi Kajimoto,(unknown),Irene S. Tobias,Taro Okada,(unknown),(unknown),J. Andrew McCammon,Shun‐ichi Nakamura,Alexandra C. Newton	44
11	Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics 2019 ·ACS Central Science ·Clarisse G. Ricci,Janice S. Chen,Yinglong Miao,Martin Jínek,Jennifer A. Doudna,J. Andrew McCammon,Giulia Palermo	96
12	Mechanism of the G-protein mimetic nanobody binding to a muscarinic G-protein-coupled receptor 2018 ·Proceedings of the National Academy of Sciences ·Yinglong Miao,J. Andrew McCammon	96
13	Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9 2017 ·Journal of the American Chemical Society ·Giulia Palermo,Clarisse G. Ricci,Amendra Fernando,Rajshekhar Basak,Martin Jínek,Ivan Rivalta,Víctor S. Batista,J. Andrew McCammon	102
14	Activation and dynamic network of the M2 muscarinic receptor 2013 ·Proceedings of the National Academy of Sciences ·Yinglong Miao,Sara E. Nichols,Paul M. Gasper,Vincent T. Metzger,J. Andrew McCammon	187
15	Computational Identification of Uncharacterized Cruzain Binding Sites 2010 ·PLoS neglected tropical diseases ·Jacob D. Durrant,Henrik Keränen,Benjamin A. Wilson,J. Andrew McCammon	39
16	Discovery of drug-like inhibitors of an essential RNA-editing ligase in Trypanosoma brucei 2008 ·Proceedings of the National Academy of Sciences ·Rommie E. Amaro,Achim Schnaufer,Heidrun Interthal,Wim G. J. Hol,Kenneth Stuart,J. Andrew McCammon	107
17	Entropic contributions and the influence of the hydrophobic environment in promiscuous protein–protein association 2008 ·Proceedings of the National Academy of Sciences ·Chia‐en A. Chang,William A. McLaughlin,Riccardo Baron,Wei Wang,J. Andrew McCammon	66
18	Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications 2006 ·Nucleic Acids Research ·Ivaylo Ivanov,B.R. Chapados,J. Andrew McCammon,John A. Tainer	72
19	The Association of Tetrameric Acetylcholinesterase with ColQ Tail: A Block Normal Mode Analysis 2005 ·PLoS Computational Biology ·Deqiang Zhang,J. Andrew McCammon	17
20	Molecular dynamics computations and solid state nuclear magnetic resonance of the gramicidin cation channel 1991 ·Biophysical Journal ·S.-W. Chiu,Linda K. Nicholson,(unknown),Shankar Subramaniam,(unknown),J. Andrew McCammon,Timothy A. Cross,Eric Jakobsson	22

About J. Andrew McCammon

J. Andrew McCammon is a scholar working on Molecular Biology, Computational Theory and Mathematics and Atomic and Molecular Physics, and Optics, having authored 841 papers that have together received 71.8k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (369 papers), Spectroscopy and Quantum Chemical Studies (171 papers) and Computational Drug Discovery Methods (126 papers). The work is most often cited by research in Molecular Biology (50.8k citations), Computational Theory and Mathematics (9.7k citations) and Physical and Theoretical Chemistry (4.2k citations). J. Andrew McCammon has collaborated with scholars based in United States, Poland and Germany. Frequent co-authors include Martin Karplus, Nathan Baker, David Sept, Michael Holst, Simpson Joseph, Jacob D. Durrant, D.L. Ermak, Michael K. Gilson, Yinglong Miao and Stephen C. Harvey. Their work appears in journals such as Nature, Science and Chemical Reviews.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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