Fuyi Li

6.8k citations

126 papers · 4.9k indexed · 3 hit papers · h-index 36

Impact in

Microbiology top 1%
Molecular Biology top 2%
- Machine Learning in Bioinformatics
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- vaccines and immunoinformatics approaches
- RNA modifications and cancer
- Protein Structure and Dynamics

Papers in

Applied Mathematics 30
- Nonlinear Partial Differential Equations 21
- Nonlinear Differential Equations Analysis 17
Numerical Analysis 9
- Differential Equations and Numerical Methods 9

Co-authors: Jiangning Song Geoffrey I. Webb Tatsuya Akutsu André Leier Kuo‐Chen Chou Tatiana T. Marquez‐Lago Yuhua Li A. Ian Smith
Journals: Briefings in Bioinformatics (34 papers)Journal of Mathematical Analysis and Applications (13 papers)Bioinformatics (11 papers)IEEE Journal of Biomedical and Health Informatics (4 papers)Nonlinear Analysis (4 papers)
Partner nations: China Australia United States

In The Last Decade

Fuyi Li

118 papers receiving 4.8k citations

Hit Papers

align trajectories log scale

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data 2019 · 323 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2019 Briefings in Bioinformatics
2018 Bioinformatics
2012 Journal of Differential Equations

Peers

Countries citing papers authored by Fuyi Li

Since Specialization

Citations

This map shows the geographic impact of Fuyi Li's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Fuyi Li with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Fuyi Li more than expected).

Fields of papers citing papers by Fuyi Li

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Fuyi Li. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Fuyi Li. The network helps show where Fuyi Li may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Fuyi Li, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Fuyi Li Line = papers co-authored together Fuyi Li links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	Kinase–inhibitor binding affinity prediction with pretrained graph encoder and language model Briefings in Bioinformatics ·杨莲君, 倪延年, Fuyi Li	2025	0
2	LncTracker: A Unified Multi-Channel Framework for Multi-Label lncRNA Localization IEEE Journal of Biomedical and Health Informatics ·Hao Yi, Xudong Guo, 倪延年, Carlos P. Rodriguez-Juan, Fuyi Li	2025	0
3	Accurate PROTAC-targeted degradation prediction with DegradeMaster Bioinformatics ·Ushna Seher, Michael J. Roy, Luke Isbel, Fuyi Li	2025	4
4	Effect of TetR Family Transcriptional Regulator PccD on Phytosterol Metabolism of Mycolicibacterium Microorganisms ·徹相場, Feng Ling-xuan, Fuyi Li, Yuying Liu, Мадина Тошпулатова, J. Zbyszewski, Yang Zhang	2024	1
5	MERITS: a web-based integrated Mycobacterial PE/PPE protein database Bioinformatics Advances ·Jackie Tanner, A.M. Chagneau, Xudong Guo, Heyun Sun, Yue Bi, Miranda E. Pitt, Chen Li, Jiangning Song, Lachlan Coin, Fuyi Li	2024	1
6	Characterizing Secretion System Effector Proteins With Structure-Aware Graph Neural Networks and Pre-Trained Language Models IEEE Journal of Biomedical and Health Informatics ·倪延年, A.M. Chagneau, Heyun Sun, Shirui Pan, Fuyi Li	2024	3
7	High Degree of Polymerization of Chitin Oligosaccharides Produced from Shrimp Shell Waste by Enrichment Microbiota Using Two-Stage Temperature-Controlled Technique of Inducing Enzyme Production and Metagenomic Analysis of Microbiota Succession Marine Drugs ·Feng Ling-xuan, 徹相場, Fuyi Li, Jinze Liu, Tengfei Zhang, J. Zbyszewski, Yang Zhang	2024	2
8	Graph contrastive learning as a versatile foundation for advanced scRNA-seq data analysis Briefings in Bioinformatics ·Zhenhao Zhang, 林金旭, Andrea Liseth Báez Becerra, Kun Wang, Yu Huang, Jiang Bian, Ruolin Yang, Fuyi Li	2024	4
9	PLANNER: A Multi-Scale Deep Language Model for the Origins of Replication Site Prediction IEEE Journal of Biomedical and Health Informatics ·A.M. Chagneau, Jackie Tanner, Sara A. Kullberg, Shirui Pan, Lachlan Coin, Jiangning Song, Fuyi Li	2024	8
10	ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species Briefings in Bioinformatics ·Ruyi Chen, Fuyi Li, Xudong Guo, Yue Bi, Chen Li, Shirui Pan, Lachlan Coin, Jiangning Song	2023	18
11	Contrastive Graph Similarity Networks ACM Transactions on the Web ·AL Farquharson, Yizhen Zheng, Di Jin, Fuyi Li, Yongliang Qiao, Shirui Pan	2023	7
12	Digerati – A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins Computers in Biology and Medicine ·Fuyi Li, M Cabrejo, Yue Bi, Sara A. Kullberg, Miranda E. Pitt, Shirui Pan, Shuqin Li, Robin B. Gasser, Lachlan Coin, Jiangning Song	2023	11
13	VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants Briefings in Bioinformatics ·Fang Ge, Chen Li, Shahid Iqbal, Muhammad Arif, Fuyi Li, Maha A. Thafar, Yuqing Yin, Apilak Worachartcheewan, Xiaofeng Xu, Jiangning Song, Dong‐Jun Yu	2022	18
14	iFeatureOmega:an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets Nucleic Acids Research ·Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Chris Bain, Robin B. Gasser, Junzhou Li, Zuoren Yang, Xin Gao, Lukasz Kurgan, Jiangning Song	2022	57
15	HEAL: an automated deep learning framework for cancer histopathology image analysis Bioinformatics ·Yanan Wang, Nicolas Coudray, Yun Zhao, Fuyi Li, Changyuan Hu, Yaozhong Zhang, Seiya Imoto, Aristotelis Tsirigos, Geoffrey I. Webb, Roger J. Daly, Jiangning Song	2021	23
16	Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction Briefings in Bioinformatics ·功小林, Cangzhi Jia, Fuyi Li, Chen Li, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou, Lachlan Coin, Jiangning Song	2021	20
17	Procleave: Predicting Protease-Specific Substrate Cleavage Sites by Combining Sequence and Structural Information Genomics Proteomics & Bioinformatics ·Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, A. Ian Smith, Tatiana T. Marquez‐Lago, Jian Li, Jiangning Song	2020	74
18	PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact Briefings in Bioinformatics ·Fuyi Li, Mooji, Tatiana T. Marquez‐Lago, André Leier, Jerico Revote, Cangzhi Jia, Yan Zhu, A. Ian Smith, Geoffrey I. Webb, Quanzhong Liu, Leyi Wei, Jian Li, Jiangning Song	2019	33
19	Characterization of the Src-regulated kinome identifies SGK1 as a key mediator of Src-induced transformation Nature Communications ·Xiuquan Ma, Luxi Zhang, Jiangning Song, Elizabeth V. Nguyen, Rachel S. Lee, Pratiksha Bhuta, Fuyi Li, Cheng Huang, Ralf B. Schittenhelm, Howard Chan, J. M. Mtika, Jianmin Wu, Kristin Brown, Christina A. Mitchell, Kaylene J. Simpson, Roger J. Daly	2019	27
20	Comparative analysis and prediction of quorum-sensing peptides using feature representation learning and machine learning algorithms Briefings in Bioinformatics ·Leyi Wei, Jie Hu, Fuyi Li, Jiangning Song, Ran Su, Quan Zou	2018	108

About Fuyi Li

Fuyi Li is a scholar working on Applied Mathematics, Numerical Analysis, Mathematical Physics, Molecular Biology and Microbiology, having authored 126 papers that have together received 4.9k indexed citations. Recurring topics across this work include Machine Learning in Bioinformatics (51 papers), RNA and protein synthesis mechanisms (34 papers), Genomics and Phylogenetic Studies (29 papers), Nonlinear Partial Differential Equations (21 papers), Nonlinear Differential Equations Analysis (17 papers), vaccines and immunoinformatics approaches (13 papers), Advanced Mathematical Physics Problems (9 papers) and Differential Equations and Numerical Methods (9 papers). The work is most often cited by research in Microbiology (396 citations), Molecular Biology (3.8k citations), Applied Mathematics (553 citations), Computational Theory and Mathematics (713 citations) and Cancer Research (342 citations). Fuyi Li has collaborated with scholars based in China, Australia and United States. Frequent co-authors include Jiangning Song, Geoffrey I. Webb, Tatsuya Akutsu, André Leier, Kuo‐Chen Chou, Tatiana T. Marquez‐Lago, Yuhua Li, A. Ian Smith, Yanan Wang and Roger J. Daly. Their work appears in journals such as Briefings in Bioinformatics, Journal of Mathematical Analysis and Applications, Bioinformatics, IEEE Journal of Biomedical and Health Informatics and Nonlinear Analysis.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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