Frederik Otzen Bagger

7.7k total citations · 2 hit papers
52 papers, 2.1k citations indexed

About

Frederik Otzen Bagger is a scholar working on Molecular Biology, Hematology and Cancer Research. According to data from OpenAlex, Frederik Otzen Bagger has authored 52 papers receiving a total of 2.1k indexed citations (citations by other indexed papers that have themselves been cited), including 38 papers in Molecular Biology, 23 papers in Hematology and 19 papers in Cancer Research. Recurrent topics in Frederik Otzen Bagger's work include Acute Myeloid Leukemia Research (19 papers), Cancer Genomics and Diagnostics (14 papers) and Single-cell and spatial transcriptomics (10 papers). Frederik Otzen Bagger is often cited by papers focused on Acute Myeloid Leukemia Research (19 papers), Cancer Genomics and Diagnostics (14 papers) and Single-cell and spatial transcriptomics (10 papers). Frederik Otzen Bagger collaborates with scholars based in Denmark, United States and Switzerland. Frederik Otzen Bagger's co-authors include Nicolas Rapin, Bo Porse, Ole Winther, Savvas Kinalis, Sarah A. Teichmann, Tomislav Ilicic, Davis J. McCarthy, Aleksandra A. Kolodziejczyk, John C. Marioni and Jong Kim and has published in prestigious journals such as Nucleic Acids Research, Nature Communications and Journal of Clinical Oncology.

In The Last Decade

Frederik Otzen Bagger

48 papers receiving 2.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Classification of low quality cells from single-cell RNA-seq data

2016 421 citations Tomislav Ilicic, Jong Kim et al. Genome biology profile →
Whole genome sequencing in clinical practice

2024 56 citations Frederik Otzen Bagger, Line Borgwardt et al. BMC Medical Genomics profile →

Peers

Countries citing papers authored by Frederik Otzen Bagger

Since Specialization

Citations

This map shows the geographic impact of Frederik Otzen Bagger's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Frederik Otzen Bagger with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Frederik Otzen Bagger more than expected).

Fields of papers citing papers by Frederik Otzen Bagger

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Frederik Otzen Bagger. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Frederik Otzen Bagger. The network helps show where Frederik Otzen Bagger may publish in the future.

Co-authorship network of co-authors of Frederik Otzen Bagger

This figure shows the co-authorship network connecting the top 25 collaborators of Frederik Otzen Bagger. A scholar is included among the top collaborators of Frederik Otzen Bagger based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Frederik Otzen Bagger. Frederik Otzen Bagger is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Copenhagen Prospective Personalized Oncology (CoPPO)—impact of comprehensive genomic profiling in more than 2000 patients in a phase I setting 2025 ·Annals of Oncology ·(unknown), Martin Højgaard, (unknown), Iben Spanggaard, Ulrik Lassen, Lary A. Robinson, (unknown), Frederik Otzen Bagger, (unknown), (unknown), Jane P. Hasselby, Eric Santoni‐Rugiu, Finn Cilius Nielsen, Christina W. Yde, (unknown)	2
2	uPAR (PLAUR) Marks Two Intra-Tumoral Subtypes of Glioblastoma: Insights from Single-Cell RNA Sequencing 2024 ·International Journal of Molecular Sciences ·Yue He, (unknown), Maria Rossing, Frederik Otzen Bagger, Andreas Kjær	2
3	Combining Homologous Recombination-Deficient Testing and Functional RAD51 Analysis Enhances the Prediction of Poly(ADP-Ribose) Polymerase Inhibitor Sensitivity 2024 ·JCO Precision Oncology ·(unknown), (unknown), (unknown), Luca Mariani, Gitte‐Bettina Nyvang, (unknown), Frederik Otzen Bagger, Mansoor Raza Mirza, Maria Rossing	6
4	Whole genome sequencing in clinical practice breakdown → 2024 ·BMC Medical Genomics ·Frederik Otzen Bagger, Line Borgwardt, (unknown), (unknown), Birgitte Bertelsen, Miyako Kodama, Finn Cilius Nielsen	56
5	A Protocol for Low-Input RNA-Sequencing of Patients with Febrile Neutropenia Captures Relevant Immunological Information 2023 ·International Journal of Molecular Sciences ·(unknown), (unknown), (unknown), (unknown), Oľga Østrup, (unknown), Nadja Hawwa Vissing, Ulrikka Nygaard, Frederik Otzen Bagger	0
6	The NFIA-ETO2 fusion blocks erythroid maturation and induces pure erythroid leukemia in cooperation with mutant TP53 2023 ·Blood ·(unknown), (unknown), Frederik Otzen Bagger, Jonathan Séguin, (unknown), Matheus Filgueira Bezerra, (unknown), Sabine Juge, (unknown), Robert Ivánek, Alexandar Tzankov, Ute M. Moll, (unknown), Ramona Schulz‐Heddergott, (unknown), Thomas Mercher, Juerg Schwaller	4
7	The histone demethylase KDM5C functions as a tumor suppressor in AML by repression of bivalently marked immature genes 2023 ·Leukemia ·(unknown), Mikkel Bruhn Schuster, Sachin Pundhir, (unknown), Adrija Kalviša, Marta Tapia, (unknown), Ying Ge, Bauke de Boer, Alexander Balhuizen, Frederik Otzen Bagger, Pavel V. Shliaha, Patrycja Sroczyńska, Julian Walfridsson, Kirsten Grønbæk, Kim Theilgaard‐Mönch, Ole N. Jensen, Kristian Helin, Bo Porse	15
8	Benchmarking full-length transcript single cell mRNA sequencing protocols 2022 ·BMC Genomics ·(unknown), (unknown), (unknown), (unknown), Finn Cilius Nielsen, Frederik Otzen Bagger	8
9	Unveiling mRNP composition by fluorescence correlation and cross-correlation spectroscopy using cell lysates 2021 ·Nucleic Acids Research ·(unknown), Jan Christiansen, Frederik Otzen Bagger, Christian Hellriegel, Finn Cilius Nielsen	6
10	Transcriptional characterization of human megakaryocyte polyploidization and lineage commitment 2021 ·Journal of Thrombosis and Haemostasis ·Fizzah Choudry, Frederik Otzen Bagger, Iain C. Macaulay, Samantha Farrow, Frances Burden, Carly Kempster, Harriet McKinney, Lars Rønn Olsen, Ni Huang, Kate Downes, Thierry Voet, Rakesh Uppal, John F. Martin, Anthony Mathur, Willem H. Ouwehand, Elisa Laurenti, Sarah A. Teichmann, Mattia Frontini	13
11	Nuclear interacting SET domain protein 1 inactivation impairs GATA1-regulated erythroid differentiation and causes erythroleukemia 2020 ·Nature Communications ·Katharina Leonards, (unknown), (unknown), Frederik Otzen Bagger, Cécile Thirant, Sabine Juge, Thomas Bock, (unknown), Matheus Filgueira Bezerra, Alexandar Tzankov, Robert Ivánek, Régine Losson, Antoine H.F.M. Peters, Thomas Mercher, Juerg Schwaller	18
12	A Gain-of-Function p53-Mutant Oncogene Promotes Cell Fate Plasticity and Myeloid Leukemia through the Pluripotency Factor FOXH1 2019 ·Cancer Discovery ·Evangelia Loizou, Ana Banito, Geulah Livshits, Yu-Jui Ho, Richard P. Koche, Francisco J. Sánchez‐Rivera, Allison Mayle, Chi-Chao Chen, Savvas Kinalis, Frederik Otzen Bagger, Edward R. Kastenhuber, Benjamin H. Durham, Scott W. Lowe	59
13	Single mRNP Analysis Reveals that Small Cytoplasmic mRNP Granules Represent mRNA Singletons 2019 ·Cell Reports ·(unknown), Jan Christiansen, Frederik Otzen Bagger, Ole Winther, Christian Hellriegel, Finn Cilius Nielsen	21
14	Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data 2019 ·BMC Bioinformatics ·Savvas Kinalis, Finn Cilius Nielsen, Ole Winther, Frederik Otzen Bagger	20
15	Classification of low quality cells from single-cell RNA-seq data breakdown → 2016 ·Genome biology ·Tomislav Ilicic, Jong Kim, Aleksandra A. Kolodziejczyk, Frederik Otzen Bagger, Davis J. McCarthy, John C. Marioni, Sarah A. Teichmann	421
16	Analysis of telomerase target gene expression effects from murine models in patient cohorts by homology translation and random survival forest modeling 2016 ·Genomics Data ·Frederik Otzen Bagger, Claudia Bruedigam, Steven Lane	1
17	ERG promotes the maintenance of hematopoietic stem cells by restricting their differentiation 2015 ·Genes & Development ·(unknown), Matilda Rehn, Marie Sigurd Hasemann, Nicolas Rapin, Frederik Otzen Bagger, (unknown), Anton Willer, Anne-Katrine Frank, (unknown), Johan Jendholm, Lina Thorén, Julie Lee, Justyna Rak, Kim Theilgaard‐Mönch, Bo Porse	55
18	Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq 2015 ·BMC Genomics ·Janus S. Jakobsen, Frederik Otzen Bagger, Marie Sigurd Hasemann, Mikkel Bruhn Schuster, Anne-Katrine Frank, Johannes Waage, Kristoffer Vitting‐Seerup, Bo Porse	25
19	Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis 2015 ·Genes & Development ·K. Rasmussen, Guangshuai Jia, Jens Vilstrup Johansen, Marianne Terndrup Pedersen, Nicolas Rapin, Frederik Otzen Bagger, Bo Porse, Olivier Bernard, Jesper Frank Christensen, Kristian Helin	194
20	HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis 2012 ·Nucleic Acids Research ·Frederik Otzen Bagger, Nicolas Rapin, Kim Theilgaard‐Mönch, Bogumił Kaczkowski, Lina Thorén, Johan Jendholm, Ole Winther, Bo Porse	61

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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