Eshel Faraggi

2.0k citations

41 papers · 1.5k · h-index 18

Impact in

Molecular Biology top 5%
- Protein Structure and Dynamics
- Machine Learning in Bioinformatics
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- vaccines and immunoinformatics approaches
Computational Theory and Mathematics top 5%
- Computational Drug Discovery Methods

Papers in

Molecular Biology 30
- Protein Structure and Dynamics 27
- RNA and protein synthesis mechanisms 13
- Machine Learning in Bioinformatics 9
Materials Chemistry 19
- Enzyme Structure and Function 18

Co-authors: Yaoqi Zhou (17 shared papers)Yuedong Yang (6 shared papers)Bin Xue (4 shared papers)Andrzej Kloczkowski (17 shared papers)Huiying Zhao (1 shared paper)Lukasz Kurgan (4 shared papers)Tuo Zhang (1 shared paper)Tuo Zhang (3 shared papers)
Journals: Proteins Structure Function and Bioinformatics (7 papers)Physical Review B (3 papers)Nucleic Acids Research (2 papers)Journal of Biomolecular Structure and Dynamics (2 papers)Biophysical Journal (2 papers)
Partner nations: United States China Australia

In The Last Decade

Eshel Faraggi

41 papers receiving 1.5k citations

Peers

Replace Domenico Cozzetto with:

Domenico Cozzetto United Kingdom

Pilar Cossio Germany

Aleksandra E. Badaczewska-Dawid Poland

Justas Dauparas United States

Yi Xiao China

Sören von Bülow Germany

Minkyung Baek United States

Adam K. Sieradzan Poland

Michael Engels Germany

Patrick Weinkam United States

Eshel Faraggi relative to Domenico Cozzetto United Kingdom Domenico Cozzetto's profile →

Citations per field

00.5×1.6×

Domenico Cozzetto · 1×

×0.7 1k/2k

MB

×0.8 150/184

CTM

×1.0 405/412

MC

×1.6 76/49

RNMI

×1.2 18/15

MICRO

Citations per year

'16

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Countries citing papers authored by Eshel Faraggi

Since Specialization

Citations

This map shows the geographic impact of Eshel Faraggi's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Eshel Faraggi with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Eshel Faraggi more than expected).

Fields of papers citing papers by Eshel Faraggi

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Eshel Faraggi. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Eshel Faraggi. The network helps show where Eshel Faraggi may publish in the future.

Co-authors

The 25 scholars most cited alongside Eshel Faraggi, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Eshel Faraggi Line = papers co-authored together Eshel Faraggi links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 41 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates Bioinformatics ·Yuedong Yang, Eshel Faraggi, Huiying Zhao, Yaoqi Zhou	2011	256
2	SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles Journal of Computational Chemistry ·Eshel Faraggi, Tuo Zhang, Yuedong Yang, Lukasz Kurgan, Yaoqi Zhou	2011	194
3	SPINE-D: Accurate Prediction of Short and Long Disordered Regions by a Single Neural-Network Based Method Journal of Biomolecular Structure and Dynamics ·Tuo Zhang, Eshel Faraggi, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Yaoqi Zhou	2012	133
4	Improving the prediction accuracy of residue solvent accessibility and real‐value backbone torsion angles of proteins by guided‐learning through a two‐layer neural network Proteins Structure Function and Bioinformatics ·Eshel Faraggi, Bin Xue, Yaoqi Zhou	2008	111
5	Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction Structure ·Eshel Faraggi, Yuedong Yang, Shesheng Zhang, Yaoqi Zhou	2009	98
6	BEST: Improved Prediction of B-Cell Epitopes from Antigen Sequences PLoS ONE ·Jianzhao Gao, Eshel Faraggi, Yaoqi Zhou, Jishou Ruan, Lukasz Kurgan	2012	79
7	Real‐value prediction of backbone torsion angles Proteins Structure Function and Bioinformatics ·Bin Xue, Ofer Dor, Eshel Faraggi, Yaoqi Zhou	2008	55
8	Accurate single-sequence prediction of solvent accessible surface area using local and global features Proteins Structure Function and Bioinformatics ·Eshel Faraggi, Yaoqi Zhou, Andrzej Kloczkowski	2014	54
9	Intrinsically Semi-disordered State and Its Role in Induced Folding and Protein Aggregation Cell Biochemistry and Biophysics ·Tuo Zhang, Eshel Faraggi, Zhixiu Li, Yaoqi Zhou	2013	53
10	DescribePROT: database of amino acid-level protein structure and function predictions Nucleic Acids Research ·Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradović, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz Kurgan	2020	52
11	The GOR Method of Protein Secondary Structure Prediction and Its Application as a Protein Aggregation Prediction Tool Methods in molecular biology ·Maksim Kouza, Eshel Faraggi, Andrzej Koliński, Andrzej Kloczkowski	2016	47
12	Trends in template/fragment-free protein structure prediction Theoretical Chemistry Accounts ·Yaoqi Zhou, Yong Duan, Yuedong Yang, Eshel Faraggi, Hongxing Lei	2010	45
13	Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles Proteins Structure Function and Bioinformatics ·Zhixiu Li, Yuedong Yang, Eshel Faraggi, Jian Zhan, Yaoqi Zhou	2014	42
14	Predicting residue–residue contact maps by a two‐layer, integrated neural‐network method Proteins Structure Function and Bioinformatics ·Bin Xue, Eshel Faraggi, Yaoqi Zhou	2008	36
15	Magnetic energy loss in permalloy thin films and microstructures Physical Review B ·Corneliu Nistor, Eshel Faraggi, J. L. Erskine	2005	34
16	Fluctuations of backbone torsion angles obtained from NMR‐determined structures and their prediction Proteins Structure Function and Bioinformatics ·Tuo Zhang, Eshel Faraggi, Yaoqi Zhou	2010	27
17	Prediction of Protein Secondary Structure Methods in molecular biology ·Yaoqi Zhou, Andrzej Kloczkowski, Eshel Faraggi, Yuedong Yang	2016	27
18	Biophysical effects of pulsed lasers in the retina and other tissues containing strongly absorbing particles: shockwave and explosive bubble generation Journal of Biomedical Optics ·Eshel Faraggi, Bernard S. Gerstman, Jinming Sun	2005	18
19	A global machine learning based scoring function for protein structure prediction Proteins Structure Function and Bioinformatics ·Eshel Faraggi, Andrzej Kloczkowski	2013	17
20	A Global Machine Learning Based Scoring Function for Protein Structure Prediction Biophysical Journal ·Eshel Faraggi, Andrzej Kloczkowski	2014	14

About Eshel Faraggi

Eshel Faraggi is a scholar working on Molecular Biology, Materials Chemistry, Condensed Matter Physics, Atomic and Molecular Physics, and Optics and Cellular and Molecular Neuroscience, having authored 41 papers that have together received 1.5k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (27 papers), Enzyme Structure and Function (18 papers), RNA and protein synthesis mechanisms (13 papers), Machine Learning in Bioinformatics (9 papers), Theoretical and Computational Physics (5 papers), Computational Drug Discovery Methods (4 papers), Ocular and Laser Science Research (4 papers) and Magnetic properties of thin films (4 papers). The work is most often cited by research in Molecular Biology (1.3k citations), Computational Theory and Mathematics (150 citations), Materials Chemistry (405 citations), Radiology, Nuclear Medicine and Imaging (76 citations) and Microbiology (18 citations). Eshel Faraggi has collaborated with scholars based in United States, China and Australia. Frequent co-authors include Yaoqi Zhou, Yuedong Yang, Bin Xue, Andrzej Kloczkowski, Huiying Zhao, Lukasz Kurgan, Tuo Zhang, Tuo Zhang, A. Keith Dunker and Shesheng Zhang. Their work appears in journals such as Proteins Structure Function and Bioinformatics, Physical Review B, Nucleic Acids Research, Journal of Biomolecular Structure and Dynamics and Biophysical Journal.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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