Colton J. Lloyd

2.5k total citations
22 papers, 1.5k citations indexed

About

Colton J. Lloyd is a scholar working on Molecular Biology, Biomedical Engineering and Genetics. According to data from OpenAlex, Colton J. Lloyd has authored 22 papers receiving a total of 1.5k indexed citations (citations by other indexed papers that have themselves been cited), including 22 papers in Molecular Biology, 11 papers in Biomedical Engineering and 4 papers in Genetics. Recurrent topics in Colton J. Lloyd's work include Microbial Metabolic Engineering and Bioproduction (21 papers), Biofuel production and bioconversion (11 papers) and Gene Regulatory Network Analysis (6 papers). Colton J. Lloyd is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (21 papers), Biofuel production and bioconversion (11 papers) and Gene Regulatory Network Analysis (6 papers). Colton J. Lloyd collaborates with scholars based in United States, Denmark and Canada. Colton J. Lloyd's co-authors include Bernhard Ø. Palsson, Adam M. Feist, Zachary A. King, Xin Fang, Laurence Yang, Nathan Mih, Jonathan M. Monk, Anand V. Sastry, Ali Ebrahim and Elizabeth Brunk and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nature Communications and Nature Biotechnology.

In The Last Decade

Colton J. Lloyd

22 papers receiving 1.5k citations

Peers

Countries citing papers authored by Colton J. Lloyd

Since Specialization

Citations

This map shows the geographic impact of Colton J. Lloyd's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Colton J. Lloyd with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Colton J. Lloyd more than expected).

Fields of papers citing papers by Colton J. Lloyd

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Colton J. Lloyd. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Colton J. Lloyd. The network helps show where Colton J. Lloyd may publish in the future.

Co-authorship network of co-authors of Colton J. Lloyd

This figure shows the co-authorship network connecting the top 25 collaborators of Colton J. Lloyd. A scholar is included among the top collaborators of Colton J. Lloyd based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Colton J. Lloyd. Colton J. Lloyd is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Metabolic growth-coupling strategies for in vivo enzyme selection systems 2025 ·Metabolic Engineering Communications ·(unknown), Pascal A. Pieters, Colton J. Lloyd, Adam M. Feist, Emre Özdemir, Bernhard Ø. Palsson, Daniel C. Zielinski	2
2	Diagnosis and mitigation of the systemic impact of genome reduction in Escherichia coli DGF-298 2024 ·mBio ·(unknown), Jean‐Christophe Lachance, (unknown), Dominick Matteau, Colton J. Lloyd, Frédéric Grenier, Cameron Lamoureux, (unknown), Adam M. Feist, Pierre‐Étienne Jacques, Bernhard Ø. Palsson, Sébastien Rodrigue	1
3	Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets 2022 ·Synthetic and Systems Biotechnology ·Omkar S. Mohite, Colton J. Lloyd, Jonathan M. Monk, Tilmann Weber, Bernhard Ø. Palsson	16
4	Predicting stress response and improved protein overproduction in Bacillus subtilis 2022 ·npj Systems Biology and Applications ·Juan D. Tibocha‐Bonilla, Cristal Zúñiga, (unknown), Colton J. Lloyd, Kevin Rychel, (unknown), Karsten Zengler	10
5	Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth 2021 ·PLoS Computational Biology ·Colton J. Lloyd, Jonathan M. Monk, Laurence Yang, Ali Ebrahim, Bernhard Ø. Palsson	7
6	Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers 2020 ·Proceedings of the National Academy of Sciences ·David Heckmann, Anaamika Campeau, Colton J. Lloyd, Patrick V. Phaneuf, Ying Hefner, Marvic Carrillo-Terrazas, Adam M. Feist, David J. Gonzalez, Bernhard Ø. Palsson	59
7	Reconstructing organisms in silico: genome-scale models and their emerging applications 2020 ·Nature Reviews Microbiology ·Xin Fang, Colton J. Lloyd, Bernhard Ø. Palsson	177
8	Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen 2019 ·PLoS Computational Biology ·Joanne K. Liu, Colton J. Lloyd, Mahmoud M. Al‐Bassam, Ali Ebrahim, Ji-Nu Kim, Connor A. Olson, Alexander A. Aksenov, Pieter C. Dorrestein, Karsten Zengler	49
9	BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data 2019 ·PLoS Computational Biology ·Jean‐Christophe Lachance, Colton J. Lloyd, Jonathan M. Monk, Laurence Yang, Anand V. Sastry, Yara Seif, Bernhard Ø. Palsson, Sébastien Rodrigue, Adam M. Feist, Zachary A. King, Pierre‐Étienne Jacques	72
10	Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli 2019 ·PLoS Computational Biology ·Bin Du, Laurence Yang, Colton J. Lloyd, Xin Fang, Bernhard Ø. Palsson	41
11	The genetic basis for adaptation of model-designed syntrophic co-cultures 2019 ·PLoS Computational Biology ·Colton J. Lloyd, Zachary A. King, Troy E. Sandberg, Ying Hefner, Connor A. Olson, Patrick V. Phaneuf, Edward J. O’Brien, Jon G. Sanders, Rodolfo A. Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M. Feist	21
12	DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression 2019 ·BMC Systems Biology ·Laurence Yang, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard Ø. Palsson	44
13	COBRAme: A computational framework for genome-scale models of metabolism and gene expression 2018 ·PLoS Computational Biology ·Colton J. Lloyd, Ali Ebrahim, Laurence Yang, Zachary A. King, Edward Catoiu, Edward J. O’Brien, Joanne K. Liu, Bernhard Ø. Palsson	107
14	Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models 2018 ·Nature Communications ·David Heckmann, Colton J. Lloyd, Nathan Mih, Yuanchi Ha, Daniel C. Zielinski, Zachary B. Haiman, Abdelmoneim Amer Desouki, Martin J. Lercher, Bernhard Ø. Palsson	155
15	Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities 2017 ·Proceedings of the National Academy of Sciences ·Xin Fang, Anand V. Sastry, Nathan Mih, Donghyuk Kim, Justin Tan, James T. Yurkovich, Colton J. Lloyd, Ye Gao, Laurence Yang, Bernhard Ø. Palsson	74
16	iML1515, a knowledgebase that computes Escherichia coli traits 2017 ·Nature Biotechnology ·Jonathan M. Monk, Colton J. Lloyd, Elizabeth Brunk, Nathan Mih, Anand V. Sastry, Zachary A. King, Rikiya Takeuchi, (unknown), Zhen Zhang, Hirotada Mori, Adam M. Feist, Bernhard Ø. Palsson	365
17	Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies 2017 ·Applied and Environmental Microbiology ·Troy E. Sandberg, Colton J. Lloyd, Bernhard Ø. Palsson, Adam M. Feist	74
18	solveME: fast and reliable solution of nonlinear ME models 2016 ·BMC Bioinformatics ·Laurence Yang, Ding Ma, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard Ø. Palsson	35
19	Principles of proteome allocation are revealed using proteomic data and genome-scale models 2016 ·Scientific Reports ·Laurence Yang, (unknown), Colton J. Lloyd, Ali Ebrahim, Michael A. Saunders, Bernhard Ø. Palsson	26
20	Next-generation genome-scale models for metabolic engineering 2015 ·Current Opinion in Biotechnology ·Zachary A. King, Colton J. Lloyd, Adam M. Feist, Bernhard Ø. Palsson	120

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