Yara Seif

1.5k total citations
26 papers, 924 citations indexed

About

Yara Seif is a scholar working on Molecular Biology, Infectious Diseases and Genetics. According to data from OpenAlex, Yara Seif has authored 26 papers receiving a total of 924 indexed citations (citations by other indexed papers that have themselves been cited), including 21 papers in Molecular Biology, 10 papers in Infectious Diseases and 9 papers in Genetics. Recurrent topics in Yara Seif's work include Microbial Metabolic Engineering and Bioproduction (10 papers), Bacterial Genetics and Biotechnology (9 papers) and Antimicrobial Resistance in Staphylococcus (8 papers). Yara Seif is often cited by papers focused on Microbial Metabolic Engineering and Bioproduction (10 papers), Bacterial Genetics and Biotechnology (9 papers) and Antimicrobial Resistance in Staphylococcus (8 papers). Yara Seif collaborates with scholars based in United States, Denmark and Canada. Yara Seif's co-authors include Bernhard Ø. Palsson, Jonathan M. Monk, Erol Kavvas, Amitesh Anand, Laurence Yang, Saugat Poudel, Anand V. Sastry, James T. Yurkovich, Xin Fang and Edward Catoiu and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Yara Seif

26 papers receiving 919 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Yara Seif United States 17 697 172 171 146 105 26 924
Erol Kavvas United States 13 458 0.7× 117 0.7× 80 0.5× 86 0.6× 54 0.5× 15 613
Maarten Vercruysse United States 8 500 0.7× 100 0.6× 208 1.2× 58 0.4× 86 0.8× 12 957
Anand V. Sastry United States 25 1.6k 2.3× 117 0.7× 521 3.0× 318 2.2× 136 1.3× 46 1.9k
Takaaki Horinouchi Japan 17 549 0.8× 41 0.2× 313 1.8× 168 1.2× 67 0.6× 30 938
Iain A. Murray United Kingdom 16 808 1.2× 112 0.7× 179 1.0× 41 0.3× 203 1.9× 30 1.2k
Elizabeth Culp Canada 13 601 0.9× 129 0.8× 108 0.6× 39 0.3× 63 0.6× 15 971
Nathan Mih United States 15 1.1k 1.5× 84 0.5× 178 1.0× 304 2.1× 70 0.7× 20 1.2k
Edward Catoiu United States 9 358 0.5× 65 0.4× 84 0.5× 90 0.6× 47 0.4× 12 459
Saugat Poudel United States 14 454 0.7× 112 0.7× 159 0.9× 44 0.3× 45 0.4× 27 594
Ae‐Ran Kwon South Korea 16 353 0.5× 82 0.5× 127 0.7× 37 0.3× 58 0.6× 42 681

Countries citing papers authored by Yara Seif

Since Specialization
Citations

This map shows the geographic impact of Yara Seif's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Yara Seif with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Yara Seif more than expected).

Fields of papers citing papers by Yara Seif

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Yara Seif. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Yara Seif. The network helps show where Yara Seif may publish in the future.

Co-authorship network of co-authors of Yara Seif

This figure shows the co-authorship network connecting the top 25 collaborators of Yara Seif. A scholar is included among the top collaborators of Yara Seif based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Yara Seif. Yara Seif is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Sastry, Anand V., Yuan Yuan, Saugat Poudel, et al.. (2024). iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia. PLoS Computational Biology. 20(10). e1012546–e1012546. 10 indexed citations
2.
Gao, Ye, et al.. (2023). TheEscherichia coliFur pan-regulon has few conserved but many unique regulatory targets. Nucleic Acids Research. 51(8). 3618–3630. 11 indexed citations
3.
Yuan, Yuan, Yara Seif, Kevin Rychel, et al.. (2022). Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures. mSystems. 7(6). e0046722–e0046722. 18 indexed citations
4.
Seif, Yara, Kasper Mikkelsen, Saugat Poudel, et al.. (2022). Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories. Proceedings of the National Academy of Sciences. 119(30). e2118262119–e2118262119. 16 indexed citations
5.
Machado, Henrique, Yara Seif, George Sakoulas, et al.. (2021). Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus. Communications Biology. 4(1). 793–793. 26 indexed citations
6.
Seif, Yara & Bernhard Ø. Palsson. (2021). Path to improving the life cycle and quality of genome-scale models of metabolism. Cell Systems. 12(9). 842–859. 15 indexed citations
7.
Rajput, Akanksha, Saugat Poudel, Hannah Tsunemoto, et al.. (2021). Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media. GigaScience. 10(1). 7 indexed citations
8.
Choudhary, Kumari Sonal, Anand V. Sastry, Ye Gao, et al.. (2020). Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships. mSystems. 5(6). 32 indexed citations
9.
Poudel, Saugat, Hannah Tsunemoto, Yara Seif, et al.. (2020). Revealing 29 sets of independently modulated genes in Staphylococcus aureus , their regulators, and role in key physiological response. Proceedings of the National Academy of Sciences. 117(29). 17228–17239. 57 indexed citations
10.
Seif, Yara, Jonathan M. Monk, Nathan Mih, et al.. (2019). A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types. PLoS Computational Biology. 15(1). e1006644–e1006644. 35 indexed citations
11.
Lachance, Jean‐Christophe, Colton J. Lloyd, Jonathan M. Monk, et al.. (2019). BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data. PLoS Computational Biology. 15(4). e1006971–e1006971. 72 indexed citations
12.
Poudel, Saugat, Hannah Tsunemoto, Michael J. Meehan, et al.. (2019). Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media. Scientific Data. 6(1). 43–43. 7 indexed citations
13.
Seif, Yara, Jonathan M. Monk, Henrique Machado, Erol Kavvas, & Bernhard Ø. Palsson. (2019). Systems Biology and Pangenome of Salmonella O-Antigens. mBio. 10(4). 25 indexed citations
14.
Rajput, Akanksha, Saugat Poudel, Hannah Tsunemoto, et al.. (2019). Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media. Scientific Data. 6(1). 322–322. 6 indexed citations
15.
Anand, Amitesh, Ke Chen, Edward Catoiu, et al.. (2019). OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States. Molecular Biology and Evolution. 37(3). 660–667. 47 indexed citations
16.
Seif, Yara, Erol Kavvas, Jean‐Christophe Lachance, et al.. (2018). Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits. Nature Communications. 9(1). 3771–3771. 95 indexed citations
17.
Fang, Xin, Jonathan M. Monk, Nathan Mih, et al.. (2018). Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa. BMC Systems Biology. 12(1). 66–66. 35 indexed citations
18.
Kavvas, Erol, Edward Catoiu, Nathan Mih, et al.. (2018). Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance. Nature Communications. 9(1). 4306–4306. 129 indexed citations
19.
Kavvas, Erol, Yara Seif, James T. Yurkovich, et al.. (2018). Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions. BMC Systems Biology. 12(1). 25–25. 45 indexed citations
20.
Norsigian, Charles J., Erol Kavvas, Yara Seif, Bernhard Ø. Palsson, & Jonathan M. Monk. (2018). iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE. Frontiers in Genetics. 9. 121–121. 30 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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