Patrick V. Phaneuf

1.3k total citations
27 papers, 608 citations indexed

About

Patrick V. Phaneuf is a scholar working on Molecular Biology, Genetics and Pharmacology. According to data from OpenAlex, Patrick V. Phaneuf has authored 27 papers receiving a total of 608 indexed citations (citations by other indexed papers that have themselves been cited), including 26 papers in Molecular Biology, 11 papers in Genetics and 3 papers in Pharmacology. Recurrent topics in Patrick V. Phaneuf's work include Genomics and Phylogenetic Studies (12 papers), Microbial Metabolic Engineering and Bioproduction (10 papers) and Evolution and Genetic Dynamics (8 papers). Patrick V. Phaneuf is often cited by papers focused on Genomics and Phylogenetic Studies (12 papers), Microbial Metabolic Engineering and Bioproduction (10 papers) and Evolution and Genetic Dynamics (8 papers). Patrick V. Phaneuf collaborates with scholars based in United States, Denmark and Australia. Patrick V. Phaneuf's co-authors include Bernhard Ø. Palsson, Adam M. Feist, Anand V. Sastry, Ying Hefner, Saugat Poudel, Richard Szubin, Kevin Rychel, Connor A. Olson, Hemanshu Mundhada and Markus J. Herrgård and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Patrick V. Phaneuf

24 papers receiving 605 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Patrick V. Phaneuf United States 13 517 207 121 38 33 27 608
Sibei Xu United States 13 507 1.0× 212 1.0× 74 0.6× 39 1.0× 23 0.7× 15 601
Adam Westbrook Canada 10 452 0.9× 105 0.5× 117 1.0× 46 1.2× 21 0.6× 14 534
Jun Hyoung Lee South Korea 13 843 1.6× 255 1.2× 148 1.2× 53 1.4× 46 1.4× 15 913
José Utrilla Mexico 15 738 1.4× 285 1.4× 259 2.1× 67 1.8× 48 1.5× 29 868
Laichuang Han China 15 497 1.0× 145 0.7× 82 0.7× 73 1.9× 57 1.7× 50 645
Sara Castaño‐Cerezo Spain 12 562 1.1× 125 0.6× 132 1.1× 41 1.1× 145 4.4× 16 703
Fabian Meyer Switzerland 14 577 1.1× 95 0.5× 199 1.6× 55 1.4× 60 1.8× 23 718
Jae Gu Pan South Korea 15 501 1.0× 99 0.5× 157 1.3× 39 1.0× 27 0.8× 22 633
Tat‐Ming Lo Singapore 7 390 0.8× 108 0.5× 129 1.1× 50 1.3× 47 1.4× 8 494
Meike Baumgart Germany 17 743 1.4× 190 0.9× 245 2.0× 100 2.6× 94 2.8× 42 880

Countries citing papers authored by Patrick V. Phaneuf

Since Specialization
Citations

This map shows the geographic impact of Patrick V. Phaneuf's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Patrick V. Phaneuf with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Patrick V. Phaneuf more than expected).

Fields of papers citing papers by Patrick V. Phaneuf

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Patrick V. Phaneuf. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Patrick V. Phaneuf. The network helps show where Patrick V. Phaneuf may publish in the future.

Co-authorship network of co-authors of Patrick V. Phaneuf

This figure shows the co-authorship network connecting the top 25 collaborators of Patrick V. Phaneuf. A scholar is included among the top collaborators of Patrick V. Phaneuf based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Patrick V. Phaneuf. Patrick V. Phaneuf is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Mohite, Omkar S., Tue Sparholt Jørgensen, Thomas Booth, et al.. (2025). Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential. Genome biology. 26(1). 9–9. 4 indexed citations
2.
Phaneuf, Patrick V., Jayanth Krishnan, Siddharth Chauhan, et al.. (2025). Rare metabolic gene essentiality is a determinant of microniche adaptation in Eschherichia coli. PLoS Pathogens. 21(12). e1013775–e1013775.
3.
Mohite, Omkar S., et al.. (2024). BGCFlow: systematic pangenome workflow for the analysis of biosynthetic gene clusters across large genomic datasets. Nucleic Acids Research. 52(10). 5478–5495. 13 indexed citations
4.
Josephs‐Spaulding, Jonathan, Akanksha Rajput, Ying Hefner, et al.. (2024). Reconstructing the transcriptional regulatory network of probiotic L. reuteri is enabled by transcriptomics and machine learning. mSystems. 9(3). e0125723–e0125723. 11 indexed citations
5.
Chauhan, Siddharth, et al.. (2024). Decomposition of the pangenome matrix reveals a structure in gene distribution in the Escherichia coli species. mSphere. 10(1). e0053224–e0053224. 2 indexed citations
6.
Pieters, Pascal A., Omkar S. Mohite, Alberto Santos, et al.. (2024). PanKB: An interactive microbial pangenome knowledgebase for research, biotechnological innovation, and knowledge mining. Nucleic Acids Research. 53(D1). D806–D818. 2 indexed citations
7.
Phaneuf, Patrick V., et al.. (2024). Meta-analysis Driven Strain Design for Mitigating Oxidative Stresses Important in Biomanufacturing. ACS Synthetic Biology. 13(7). 2045–2059.
8.
Phaneuf, Patrick V., et al.. (2024). Pangenome reconstruction of Lactobacillaceae metabolism predicts species-specific metabolic traits. mSystems. 9(7). e0015624–e0015624. 8 indexed citations
9.
Rychel, Kevin, Justin Tan, Cameron Lamoureux, et al.. (2023). Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance. Cell Reports. 42(9). 113105–113105. 13 indexed citations
10.
Anand, Amitesh, Connor A. Olson, Patrick V. Phaneuf, et al.. (2022). Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity. Nature Communications. 13(1). 3682–3682. 16 indexed citations
11.
Phaneuf, Patrick V., Daniel C. Zielinski, James T. Yurkovich, et al.. (2021). Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data. ACS Synthetic Biology. 10(12). 3379–3395. 9 indexed citations
12.
Heckmann, David, Anaamika Campeau, Colton J. Lloyd, et al.. (2020). Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers. Proceedings of the National Academy of Sciences. 117(37). 23182–23190. 59 indexed citations
13.
Rychel, Kevin, et al.. (2020). iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning. Nucleic Acids Research. 49(D1). D112–D120. 80 indexed citations
14.
Phaneuf, Patrick V., James T. Yurkovich, David Heckmann, et al.. (2020). Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity. BMC Genomics. 21(1). 514–514. 24 indexed citations
15.
Sandberg, Troy E., Richard Szubin, Patrick V. Phaneuf, & Bernhard Ø. Palsson. (2020). Synthetic cross-phyla gene replacement and evolutionary assimilation of major enzymes. Nature Ecology & Evolution. 4(10). 1402–1409. 14 indexed citations
16.
Anand, Amitesh, Connor A. Olson, Laurence Yang, et al.. (2019). Pseudogene repair driven by selection pressure applied in experimental evolution. Nature Microbiology. 4(3). 386–389. 19 indexed citations
17.
Lloyd, Colton J., Zachary A. King, Troy E. Sandberg, et al.. (2019). The genetic basis for adaptation of model-designed syntrophic co-cultures. PLoS Computational Biology. 15(3). e1006213–e1006213. 21 indexed citations
18.
Du, Bin, Connor A. Olson, Anand V. Sastry, et al.. (2019). Adaptive laboratory evolution of Escherichia coli under acid stress. Microbiology. 166(2). 141–148. 27 indexed citations
19.
Guzmán, Gabriela I., Connor A. Olson, Ying Hefner, et al.. (2018). Reframing gene essentiality in terms of adaptive flexibility. BMC Systems Biology. 12(1). 143–143. 9 indexed citations
20.
Mundhada, Hemanshu, Jose Miguel Seoane, Konstantin Schneider, et al.. (2016). Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution. Metabolic Engineering. 39. 141–150. 108 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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