Carson Holt

9.8k total citations · 3 hit papers
15 papers, 3.7k citations indexed

About

Carson Holt is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, Carson Holt has authored 15 papers receiving a total of 3.7k indexed citations (citations by other indexed papers that have themselves been cited), including 13 papers in Molecular Biology, 6 papers in Genetics and 6 papers in Plant Science. Recurrent topics in Carson Holt's work include Genomics and Phylogenetic Studies (8 papers), Chromosomal and Genetic Variations (5 papers) and RNA and protein synthesis mechanisms (5 papers). Carson Holt is often cited by papers focused on Genomics and Phylogenetic Studies (8 papers), Chromosomal and Genetic Variations (5 papers) and RNA and protein synthesis mechanisms (5 papers). Carson Holt collaborates with scholars based in United States, Poland and Canada. Carson Holt's co-authors include Mark Yandell, Barry Moore, Genı́s Parra, Ian Korf, Alejandro Sánchez Alvarado, Brandi L. Cantarel, Sofia Robb, Eric Ross, Michael S. Campbell and Karen Eilbeck and has published in prestigious journals such as Nucleic Acids Research, Bioinformatics and PLANT PHYSIOLOGY.

In The Last Decade

Carson Holt

15 papers receiving 3.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

2011 1.4k citations Carson Holt, Mark Yandell BMC Bioinformatics profile →
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

2007 1.3k citations Brandi L. Cantarel, Ian Korf et al. Genome Research profile →
Genome Annotation and Curation Using MAKER and MAKER‐P

2014 451 citations Michael S. Campbell, Carson Holt et al. Current Protocols in Bioinformatics profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Carson Holt United States	11	2.2k	1.7k	898	472	459	15	3.7k
Katharina J. Hoff Germany	18	1.9k 0.9×	1.3k 0.8×	672 0.7×	532 1.1×	402 0.9×	39	3.3k
Mathieu Seppey Switzerland	9	2.2k 1.0×	1.4k 0.8×	884 1.0×	682 1.4×	571 1.2×	9	4.0k
Maria Nattestad United States	11	2.7k 1.3×	1.6k 0.9×	1.1k 1.2×	444 0.9×	280 0.6×	17	3.9k
Genı́s Parra Spain	23	3.4k 1.5×	2.0k 1.2×	1.1k 1.3×	636 1.3×	469 1.0×	34	5.3k
Mosè Manni Switzerland	18	2.5k 1.2×	1.6k 0.9×	1.0k 1.1×	780 1.7×	647 1.4×	25	4.8k
Fangluan Gao China	17	1.9k 0.9×	1.4k 0.8×	647 0.7×	550 1.2×	937 2.0×	53	3.6k
Zachary Lewis United States	25	2.3k 1.0×	1.9k 1.1×	1.8k 2.0×	500 1.1×	422 0.9×	53	4.7k
Keith Bradnam United States	10	1.6k 0.8×	1.2k 0.7×	518 0.6×	381 0.8×	245 0.5×	11	2.6k
Foo Cheung United States	25	2.3k 1.0×	2.9k 1.7×	579 0.6×	293 0.6×	289 0.6×	33	4.5k
Gui T. Wang China	15	1.6k 0.7×	774 0.5×	561 0.6×	801 1.7×	778 1.7×	29	2.9k

Countries citing papers authored by Carson Holt

Since Specialization

Citations

This map shows the geographic impact of Carson Holt's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Carson Holt with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Carson Holt more than expected).

Fields of papers citing papers by Carson Holt

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Carson Holt. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Carson Holt. The network helps show where Carson Holt may publish in the future.

Co-authorship network of co-authors of Carson Holt

This figure shows the co-authorship network connecting the top 25 collaborators of Carson Holt. A scholar is included among the top collaborators of Carson Holt based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Carson Holt. Carson Holt is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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15 of 15 papers shown

Wen, Ting, Andrew Farrell, Rong Mao, et al.. (2022). Rapid genome sequencing identifies a novel de novoSNAP25variant for neonatal congenital myasthenic syndrome. Molecular Case Studies. 8(7). a006242–a006242. 5 indexed citations

Maclary, Emily, Elena F. Boer, Rebecca Bruders, et al.. (2021). Two Genomic Loci Control Three Eye Colors in the Domestic Pigeon ( Columba livia ). Molecular Biology and Evolution. 38(12). 5376–5390. 11 indexed citations

Boer, Elena F., et al.. (2021). A ROR2 coding variant is associated with craniofacial variation in domestic pigeons. Current Biology. 31(22). 5069–5076.e5. 13 indexed citations

Holt, Carson, Michael S. Campbell, David A. Keays, et al.. (2018). Improved Genome Assembly and Annotation for the Rock Pigeon ( Columba livia ). G3 Genes Genomes Genetics. 8(5). 1391–1398. 46 indexed citations

Majoros, William H., Carson Holt, Michael S. Campbell, et al.. (2018). Predicting gene structure changes resulting from genetic variants via exon definition features. Bioinformatics. 34(21). 3616–3623. 5 indexed citations

Yu, Yao, Hao Hu, Ryan J. Bohlender, et al.. (2017). XPAT: a toolkit to conduct cross-platform association studies with heterogeneous sequencing datasets. Nucleic Acids Research. 46(6). e32–e32. 5 indexed citations

Majoros, William H., Michael S. Campbell, Carson Holt, et al.. (2016). High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE. Bioinformatics. 33(10). 1437–1446. 2 indexed citations

Childs, Kevin L., Michael S. Campbell, Joshua C. Stein, et al.. (2014). Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes . PLANT PHYSIOLOGY. 167(1). 25–39. 29 indexed citations

Campbell, Michael S., Carson Holt, Barry Moore, & Mark Yandell. (2014). Genome Annotation and Curation Using MAKER and MAKER‐P. Current Protocols in Bioinformatics. 48(1). 4.11.1–4.11.39. 451 indexed citations breakdown →

10.

Campbell, Michael S., Carson Holt, Joshua C. Stein, et al.. (2013). MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations . PLANT PHYSIOLOGY. 164(2). 513–524. 271 indexed citations

11.

Holt, Carson, Bojan Losic, Deepa Pai, et al.. (2013). WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing. Bioinformatics. 30(6). 768–774. 12 indexed citations

12.

Holt, Carson & Mark Yandell. (2011). MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics. 12(1). 491–491. 1393 indexed citations breakdown →

13.

Wegrzyn, Jill, Genı́s Parra, Carson Holt, et al.. (2010). The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. BMC Genomics. 11(1). 116 indexed citations

14.

Eilbeck, Karen, Barry Moore, Carson Holt, & Mark Yandell. (2009). Quantitative measures for the management and comparison of annotated genomes. BMC Bioinformatics. 10(1). 67–67. 96 indexed citations

15.

Cantarel, Brandi L., Ian Korf, Sofia Robb, et al.. (2007). MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Research. 18(1). 188–196. 1257 indexed citations breakdown →

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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