John P. Hamilton

12.3k citations

84 papers · 5.7k indexed · 3 hit papers · h-index 40

Impact in

Plant Science top 0.2%
- Plant Disease Resistance and Genetics
- Plant Pathogens and Resistance
- Chromosomal and Genetic Variations
- Plant-Microbe Interactions and Immunity
- Plant Molecular Biology Research
Horticulture top 2%

Papers in

Horticulture 3
Plant Science 54
- Plant Pathogens and Resistance 22
- Plant Disease Resistance and Genetics 22
- Chromosomal and Genetic Variations 17
- Plant-Microbe Interactions and Immunity 12
- Plant Virus Research Studies 9
- Plant Pathogenic Bacteria Studies 9

Co-authors: C. Robin Buell Brieanne Vaillancourt Brian J. Haas Kevin L. Childs Matthew A. Campbell Haining Lin Joshua C. Wood Jennifer R. Wortman
Journals: The Plant Genome (10 papers)PLoS ONE (9 papers)G3 Genes Genomes Genetics (7 papers)The Plant Journal (7 papers)Nucleic Acids Research (4 papers)
Partner nations: United States United Kingdom Canada

In The Last Decade

John P. Hamilton

79 papers receiving 5.6k citations

Hit Papers

align trajectories log scale

Single-cell multi-omics in the medicinal plant Catharanthus roseus 2023 · 104 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2023 Nature Chemical Biology
2020 GigaScience
2006 Nucleic Acids Research

Peers

Countries citing papers authored by John P. Hamilton

Since Specialization

Citations

This map shows the geographic impact of John P. Hamilton's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John P. Hamilton with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John P. Hamilton more than expected).

Fields of papers citing papers by John P. Hamilton

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John P. Hamilton. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John P. Hamilton. The network helps show where John P. Hamilton may publish in the future.

Co-authors

The 25 scholars most cited alongside John P. Hamilton, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with John P. Hamilton Line = papers co-authored together John P. Hamilton links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Jan and mini‐Jan, a model system for potato functional genomics Plant Biotechnology Journal ·Haoyang Xin, Luke W. Strickland, John P. Hamilton, Jacob K. Trusky, Chao Fang, Nathaniel Butler, David S. Douches, C. Robin Buell, Jiming Jiang	2025	1
2	An allelic resolution gene atlas for tetraploid potato provides insights into tuberization and stress resilience The Plant Journal ·Julia Brose, Dionne Martin, Yi‐Wen Wang, Joshua C. Wood, Brieanne Vaillancourt, John P. Hamilton, C. Robin Buell	2025	0
3	A Reference-Quality NLRome for the Hexaploid Sweetpotato and Diploid Wild Relatives Molecular Plant-Microbe Interactions ·Camilo H. Parada-Rojas, Kevin L. Childs, Monica Fernandez De Soto, Adrián Antonio Riascos Salcedo, Kenneth V. Pecota, G. Craig Yencho, C. V. Almeyda, John P. Hamilton, Mercy Kitavi, C. Robin Buell, Gavin C. Conant, David A. Baltzegar, L. M. Quesada-Ocampo	2025	0
4	Phased chromosome-level assembly provides insight into the genome architecture of hexaploid sweetpotato Nature Plants ·Shan Wu, Honghe Sun, Xuebo Zhao, John P. Hamilton, Marcelo Mollinari, Gabriel de Siqueira Gesteira, Mercy Kitavi, Mengxiao Yan, Hongxia Wang, Jun Yang, G. Craig Yencho, C. Robin Buell, Zhangjun Fei	2025	0
5	The physiological and molecular responses of potato tuberization to projected future elevated temperatures PLANT PHYSIOLOGY ·Abigail M. Guillemette, Guillian Hernández Casanova, John P. Hamilton, Eva Pokorná, Petre I. Dobrev, Václav Motyka, Aaron M. Rashotte, Courtney P. Leisner	2024	3
6	Chromosome‐scale Salvia hispanica L. (Chia) genome assembly reveals rampant Salvia interspecies introgression The Plant Genome ·Julia Brose, John P. Hamilton, Nicholas Schlecht, Dongyan Zhao, Paulina M. Mejía‐Ponce, Arely Cruz‐Pérez, Brieanne Vaillancourt, Joshua C. Wood, Patrick P. Edger, Salvador Montes‐Hernández, Guillermo Orozco de Rosas, Björn Hamberger, Angélica Cibrián‐Jaramillo, C. Robin Buell	2024	1
7	A chromosome-level genome assembly of the Peruvian Algarrobo (Neltuma pallida) provides insights on its adaptation to its unique ecological niche G3 Genes Genomes Genetics ·R Torre, John P. Hamilton, Manuel Saucedo-Bazalar, Esteban Caycho, Brieanne Vaillancourt, Joshua C. Wood, Manuel Ramírez, C. Robin Buell, Gisella Orjeda	2024	1
8	Chromosome-scale genome assembly of the ‘Munstead’ cultivar of Lavandula angustifolia BMC Genomic Data ·John P. Hamilton, Brieanne Vaillancourt, Joshua C. Wood, Haiyan Wang, Jiming Jiang, Pamela S. Soltis, C. Robin Buell	2023	7
9	Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory Nature Communications ·Abigail E. Bryson, Emily R. Lanier, Kin H. Lau, John P. Hamilton, Brieanne Vaillancourt, Davis Mathieu, Alan Yocca, Garret P. Miller, Patrick P. Edger, C. Robin Buell, Björn Hamberger	2023	27
10	Identification of genes associated with abiotic stress tolerance in sweetpotato using weighted gene co‐expression network analysis Plant Direct ·Mercy Kitavi, Dorcus C. Gemenet, Joshua C. Wood, John P. Hamilton, Shan Wu, Zhangjun Fei, Awais Khan, C. Robin Buell	2023	3
11	Genome Report: Genome sequence of 1S1, a transformable and highly regenerable diploid potato for use as a model for gene editing and genetic engineering G3 Genes Genomes Genetics ·Thilani B. Jayakody, John P. Hamilton, Jacob Jensen, Samantha Sikora, Joshua C. Wood, David S. Douches, C. Robin Buell	2023	6
12	Combining GWAS and TWAS to identify candidate causal genes for tocochromanol levels in maize grain Genetics ·Di Wu, Xiaowei Li, R. Tanaka, Joshua C. Wood, Laura E. Tibbs‐Cortes, Maria Magallanes‐Lundback, Nolan Bornowski, John P. Hamilton, Brieanne Vaillancourt, Christine Diepenbrock, Xianran Li, Nicholas Deason, Gregory R. Schoenbaum, Jianming Yu, C. Robin Buell, Dean DellaPenna, Michael A. Gore	2022	24
13	Leveraging prior biological knowledge improves prediction of tocochromanols in maize grain The Plant Genome ·R. Tanaka, Di Wu, Xiaowei Li, Laura E. Tibbs‐Cortes, Joshua C. Wood, Maria Magallanes‐Lundback, Nolan Bornowski, John P. Hamilton, Brieanne Vaillancourt, Xianran Li, Nicholas Deason, Gregory R. Schoenbaum, C. Robin Buell, Dean DellaPenna, Jianming Yu, Michael A. Gore	2022	2
14	Transcriptome‐wide association and prediction for carotenoids and tocochromanols in fresh sweet corn kernels The Plant Genome ·Jenna Hershberger, R. Tanaka, Joshua C. Wood, Nicholas Kaczmar, Di Wu, John P. Hamilton, Dean DellaPenna, C. Robin Buell, Michael A. Gore	2022	13
15	Genome-wide association study suggests an independent genetic basis of zinc and cadmium concentrations in fresh sweet corn kernels G3 Genes Genomes Genetics ·Matheus Baseggio, Matthew Murray, Di Wu, Gregory Ziegler, Nicholas Kaczmar, James Chamness, John P. Hamilton, C. Robin Buell, Olena K. Vatamaniuk, Edward S. Buckler, Margaret E. Smith, Ivan Baxter, William F. Tracy, Michael A. Gore	2021	12
16	Genome sequence of M6, a diploid inbred clone of the high‐glycoalkaloid‐producing tuber‐bearing potato species Solanum chacoense, reveals residual heterozygosity The Plant Journal ·Courtney P. Leisner, John P. Hamilton, Emily Crisovan, Norma C. Manrique‐Carpintero, Alexandre P. Marand, Linsey Newton, Gina M. Pham, Jiming Jiang, David S. Douches, Shelley Jansky, C. Robin Buell	2018	95
17	Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain The Plant Cell ·Christine Diepenbrock, Catherine B. Kandianis, Alexander E. Lipka, Maria Magallanes‐Lundback, Brieanne Vaillancourt, Elsa Góngora‐Castillo, Jason G. Wallace, Jason Cepela, Alex Mesberg, Peter J. Bradbury, Daniel C. Ilut, Maria Mateos-Hernandez, John P. Hamilton, Brenda F. Owens, Tyler Tiede, Edward S. Buckler, Torbert Rocheford, C. Robin Buell, Michael A. Gore, Dean DellaPenna	2017	83
18	Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing PLoS ONE ·James A. Stapleton, Jeongwoon Kim, John P. Hamilton, Ming Wu, Luiz Irber, Rohan Maddamsetti, Bryan Briney, Linsey Newton, Dennis R. Burton, C. Titus Brown, Christina Chan, C. Robin Buell, Timothy A. Whitehead	2016	22
19	A Stereoselective Hydroxylation Step of Alkaloid Biosynthesis by a Unique Cytochrome P450 in Catharanthus roseus Journal of Biological Chemistry ·LesleyAnn Giddings, David K. Liscombe, John P. Hamilton, Kevin L. Childs, Dean DellaPenna, C. Robin Buell, Sarah E. O’Connor	2011	104
20	Expressed Sequence Tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis Plant Molecular Biology ·John Cairney, Zheng Li, Allison Cowels, Joseph Hsiao, Victoria Zismann, Jia Liu, Shu Ouyang, Françoise Thibaud‐Nissen, John P. Hamilton, Kevin L. Childs, Gerald S. Pullman, Yiting Zhang, Thomas J. Oh, C. Robin Buell	2006	62

About John P. Hamilton

John P. Hamilton is a scholar working on Horticulture, Plant Science, Pharmacology, Molecular Biology and Biochemistry, having authored 84 papers that have together received 5.7k indexed citations. Recurring topics across this work include Plant Pathogens and Resistance (22 papers), Plant Disease Resistance and Genetics (22 papers), Genomics and Phylogenetic Studies (19 papers), Chromosomal and Genetic Variations (17 papers), Plant-Microbe Interactions and Immunity (12 papers), Plant biochemistry and biosynthesis (10 papers), Plant Virus Research Studies (9 papers) and Plant Pathogenic Bacteria Studies (9 papers). The work is most often cited by research in Plant Science (4.1k citations), Horticulture (51 citations), Molecular Biology (3.0k citations), Food Science (527 citations) and Genetics (812 citations). John P. Hamilton has collaborated with scholars based in United States, United Kingdom and Canada. Frequent co-authors include C. Robin Buell, Brieanne Vaillancourt, Brian J. Haas, Kevin L. Childs, Matthew A. Campbell, Haining Lin, Joshua C. Wood, Jennifer R. Wortman, David S. Douches and Françoise Thibaud‐Nissen. Their work appears in journals such as The Plant Genome, PLoS ONE, G3 Genes Genomes Genetics, The Plant Journal and Nucleic Acids Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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