Anthony Bolger

71.8k citations

20 papers · 44.4k indexed · 4 hit papers · h-index 16

Impact in

Endocrinology top 0.1%
Molecular Biology top 0.05%
- Genomics and Phylogenetic Studies
- Gut microbiota and health
- RNA modifications and cancer

Papers in

Plant Science 9
- Plant Pathogenic Bacteria Studies 4
- Plant Stress Responses and Tolerance 2
- Plant-Microbe Interactions and Immunity 2
- Plant Parasitism and Resistance 2
Molecular Biology 12
- Genomics and Phylogenetic Studies 6
- Molecular Biology Techniques and Applications 3
- Bioinformatics and Genomic Networks 2

Co-authors: Björn Usadel Marc Lohse Mark Stitt Alisdair R. Fernie Axel Nagel John E. Lunn Marie Bolger Rainer Schwacke
Journals: PLANT PHYSIOLOGY (2 papers)Frontiers in Plant Science (2 papers)The Plant Cell (2 papers)The Plant Journal (2 papers)Nature Methods (1 paper)
Partner nations: Germany United States Netherlands

In The Last Decade

Anthony Bolger

20 papers receiving 44.1k citations

Hit Papers

align trajectories log scale

MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis 2019 · 321 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2019 Molecular Plant
2016 Plant Biotechnology Journal
2014 Bioinformatics
2012 Nucleic Acids Research

Peers

Countries citing papers authored by Anthony Bolger

Since Specialization

Citations

This map shows the geographic impact of Anthony Bolger's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Anthony Bolger with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Anthony Bolger more than expected).

Fields of papers citing papers by Anthony Bolger

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Anthony Bolger. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Anthony Bolger. The network helps show where Anthony Bolger may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Anthony Bolger, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Anthony Bolger Line = papers co-authored together Anthony Bolger links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model Nature Methods ·J. Kim, Anthony Bolger, Nathaniel Barber, Jo'rayeva Shohida Choriyevna, Janina Maß, David Jaime Cocoví Solberg, Manshan Zhu, D. Henke, Oliver Ebenhöh, Björn Usadel, Rainer Schwacke, Andreas P.M. Weber, Marie Bolger, Alisandra K. Denton	2025	3
2	In‐depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis The Plant Journal ·IL-Young Jang, Minghui Meng, Xiaohui Jiang, Anthony Bolger, Sebastian Beier, Jan P. Buchmann, Alisdair R. Fernie, Weiwei Wen, Björn Usadel	2024	8
3	The Arabidopsis thaliana onset of leaf death 12 mutation in the lectin receptor kinase P2K2 results in an autoimmune phenotype BMC Plant Biology ·Liming Zhao, Haojie Wang, K Freiherr, Joost T. van Dongen, Anthony Bolger, Romy Schmidt, Hai‐Chun Jing, Bernd Mueller‐Roeber, Jos H. M. Schippers	2023	4
4	Genetic and molecular characterization of multicomponent resistance of Pseudomonas against allicin Life Science Alliance ·Jan Borlinghaus, Anthony Bolger, 康治矢野, Alexander Vogel, Björn Usadel, A. Nahabidian, Alan Slusarenko	2020	10
5	Fluctuating Light Interacts with Time of Day and Leaf Development Stage to Reprogram Gene Expression PLANT PHYSIOLOGY ·Zheng Zihao, Anthony Bolger, Jürgen Zeier, L Czerwiecki, Vladimı́r Beneš, Sandra Trenkamp, Björn Usadel, Eva M. Farré, Shizue Matsubara	2019	50
6	MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis Molecular Plant ·Rainer Schwacke, Gabriel Yaxal Ponce‐Soto, Kirsten Krause, Anthony Bolger, Borjana Arsova, Asis Hallab, Kristina Gruden, Mark Stitt, Marie Bolger, Björn Usadel Hit paper breakdown →	2019	321
7	De Novo Transcriptome Analysis of Durum Wheat Flag Leaves Provides New Insights Into the Regulatory Response to Elevated CO2 and High Temperature Frontiers in Plant Science ·Rubén Vicente, Anthony Bolger, Rafael Martínez‐Carrasco, Pilar Pérez, Ahmed Kamar, Björn Usadel, Rosa Morcuende	2019	30
8	Isolation of Open Chromatin Identifies Regulators of Systemic Acquired Resistance PLANT PHYSIOLOGY ·Yasuki Shiino, G.G. Genoway, Anthony Bolger, 胡守桢, Vladimı́r Beneš, Björn Usadel, Uwe Conrath	2019	23
9	Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris Nature Communications ·Alexander Vogel, Rainer Schwacke, Alisandra K. Denton, Björn Usadel, Julien Hollmann, Karsten Fischer, Anthony Bolger, Maximilian Schmidt, Marie Bolger, Heidrun Gundlach, Klaus Mayer, Hanna Weiss‐Schneeweiss, Eva M. Temsch, Kirsten Krause	2018	129
10	Computational aspects underlying genome to phenome analysis in plants The Plant Journal ·Anthony Bolger, Hendrik Poorter, Vincent Parkes, Marie Bolger, Daniel Arend, Sonia Osorio, Heidrun Gundlach, Klaus Mayer, Matthias Lange, Uwe Scholz, Björn Usadel	2018	42
11	De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing The Plant Cell ·Maximilian Schmidt, Alexander Vogel, Alisandra K. Denton, Benjamin Istace, Alexandra Wormit, Henri van de Geest, Marie Bolger, Saleh Alseekh, Janina Maß, Christian Pfaff, Ulrich Schurr, Roger T. Chetelat, Florian Maumus, Jean‐Marc Aury, Sergey Koren, Alisdair R. Fernie, Dani Zamir, Anthony Bolger, Björn Usadel	2017	138
12	Metabolic Adaptation, a Specialized Leaf Organ Structure and Vascular Responses to Diurnal N2 Fixation by Nostoc azollae Sustain the Astonishing Productivity of Azolla Ferns without Nitrogen Fertilizer Frontiers in Plant Science ·Paul Brouwer, Andrea Bräutigam, 憲吉韮沢, Wilbert F. Wilhelm, Adrie van der Werf, Urte Schlüter, Gert‐Jan Reichart, Anthony Bolger, Björn Usadel, Andreas P.M. Weber, Henriette Schluepmann	2017	38
13	Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N₂ but may denitrify New Phytologist ·Danielle Dagher, Paul Brouwer, Henk Bolhuis, Gert‐Jan Reichart, Nils Koppers, Bruno Hüettel, Anthony Bolger, Fay‐Wei Li, Shifeng Cheng, Xin Liu, Gane Ka‐Shu Wong, Kathleen M. Pryer, Andreas P.M. Weber, Andrea Bräutigam, Henriette Schluepmann	2017	27
14	Streptomyces thermoautotrophicus does not fix nitrogen Scientific Reports ·Drew C. MacKellar, فیروز دریادل, J. Libano Alonso, Anthony Bolger, Helene H Halsey, James W. Murray, H. Tobe, Roger L. Chang, 이성희.여에스더.유태우, Peter Q. Nguyen, Jimmy E. Woodward, Hugo R. Permingeat, Neel Joshi, Pamela A. Silver, Björn Usadel, A. William Rutherford, Maren Friesen, Jürgen Prell	2016	28
15	Tomato facultative parthenocarpy results from SlAGAMOUS‐LIKE6loss of function Plant Biotechnology Journal ·Chen Klap, Md Gulam Rabbany Rabbi, Anthony Bolger, Tzahi Arazi, Suresh K. Gupta, Sara Shabtai, Björn Usadel, Yehiam Salts, Rivka Barg Hit paper breakdown →	2016	207
16	Trimmomatic: a flexible trimmer for Illumina sequence data Bioinformatics ·Anthony Bolger, Marc Lohse, Björn Usadel Hit paper breakdown →	2014	42486
17	Evolution of a Complex Locus for Terpene Biosynthesis in Solanum The Plant Cell ·Yuki Matsuba, Thuong Thi Hong Nguyen, Bae Chang-wook, Vasiliki Falara, Eliana Gonzales‐Vigil, Bryan J. Leong, Petra Schäfer, David Kudrna, Rod A. Wing, Anthony Bolger, Björn Usadel, Alain Tissier, Alisdair R. Fernie, Cornelius S. Barry, Eran Pichersky	2013	119
18	Identification of candidate genes for phenolics accumulation in tomato fruit Plant Science ·Antonio Di Matteo, Valentino Ruggieri, Adriana Sacco, Maria Manuela Rigano, Filomena Carriero, Anthony Bolger, Alisdair R. Fernie, Luigi Frusciante, Amalia Barone	2013	38
19	RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics Nucleic Acids Research ·Marc Lohse, Anthony Bolger, Axel Nagel, Alisdair R. Fernie, John E. Lunn, Mark Stitt, Björn Usadel Hit paper breakdown →	2012	633
20	Algorithm-driven Artifacts in median polish summarization of Microarray data BMC Bioinformatics ·Federico M. Giorgi, Anthony Bolger, Marc Lohse, Björn Usadel	2010	41

About Anthony Bolger

Anthony Bolger is a scholar working on Plant Science, Molecular Biology, Insect Science, Ecology and Applied Mathematics, having authored 20 papers that have together received 44.4k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (6 papers), Plant Pathogenic Bacteria Studies (4 papers), Molecular Biology Techniques and Applications (3 papers), Microbial Community Ecology and Physiology (2 papers), Plant Stress Responses and Tolerance (2 papers), Plant-Microbe Interactions and Immunity (2 papers), Plant Parasitism and Resistance (2 papers) and Bioinformatics and Genomic Networks (2 papers). The work is most often cited by research in Endocrinology (1.9k citations), Molecular Biology (22.6k citations), Ecology (8.1k citations), Molecular Medicine (1.5k citations) and Plant Science (11.2k citations). Anthony Bolger has collaborated with scholars based in Germany, United States and Netherlands. Frequent co-authors include Björn Usadel, Marc Lohse, Mark Stitt, Alisdair R. Fernie, Axel Nagel, John E. Lunn, Marie Bolger, Rainer Schwacke, Kirsten Krause and Asis Hallab. Their work appears in journals such as PLANT PHYSIOLOGY, Frontiers in Plant Science, The Plant Cell, The Plant Journal and Nature Methods.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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